Array 1 30360-28848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTT010000025.1 Alicyclobacillus mali strain FSL-W10-0018 NODE_25_length_30421_cov_37.151375, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 30359 37 100.0 35 ..................................... TGACAAATGTATCCTGGATAATCAGCGCCTGCGCC 30287 37 100.0 37 ..................................... AAGGTCATGTCTGTCGAGCCTGCATACGCTCCCACAC 30213 37 100.0 38 ..................................... CGGCCCACGCCTGGGCCGCAGCCTCGGCTATCTCACGC 30138 37 100.0 36 ..................................... TAAAGAAATCTCGTCTAATCACGCCTGACGGAAAAC 30065 37 100.0 41 ..................................... CTCGAAAGCGAGCGAGTCGAACTGGACAGCGTTGAAGTTTT 29987 37 100.0 38 ..................................... ACGCGCCCGTCACGGCTTGCGCATACTGCGTCGCTGTC 29912 37 100.0 38 ..................................... CCCTCCAACCCCGTTGCTGTCTACCGCGCCGTCAGCGT 29837 37 100.0 42 ..................................... TCCGCCCCAAGGGTGCCATGTGATCTCGACGGTGCATCGCCC 29758 37 100.0 36 ..................................... GTCCCGCATGGCGCCCATCTCCTCTCGCCCTATACT 29685 37 100.0 35 ..................................... GTTATCTGCGTCTCGCGTATGTATCCCGCGTCGGC 29613 37 100.0 35 ..................................... GAGGAAGGCGGCGGACAAGTTCAAGCGGCAACTGC 29541 37 100.0 36 ..................................... GCCATAAATAGACGAGCCATAGCCATCATATTATAA 29468 37 100.0 34 ..................................... CGACAGCCGCACACGACGACCGCATCGACGCGCT 29397 37 100.0 35 ..................................... GTAGCCCTTGCGATATAGTCGGCCCTGCGGGGGCT 29325 37 100.0 35 ..................................... GCGAATGGAGGTGAAATTTGTCGTGGCGCGTCGAT 29253 37 100.0 36 ..................................... ACTCACTGGCCGCACGCCCCACAGGAAGAATGGCTC 29180 37 100.0 38 ..................................... CAAAAGCCTCATTAAGCGTATGTACTCGGCATTAGAGA 29105 37 100.0 37 ..................................... GAAGGTGGAGTTGCCTTCTCCACCTTGAACAGCATGT 29031 37 100.0 38 ..................................... CCGGCGGTGCAAGTTGCGACCCCGCCGACGGACGCGCA 28956 37 100.0 35 ..................................... GGTGCAGACGATTGGAGGTTAATCGGCGATGATTG 28884 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 21 37 100.0 37 GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Left flank : GCCGCCGACGATCTCGGCGGATCAACGAGCGCGCTGCGCTGATACGTCACGGTGCCTTTGA # Right flank : TCTACGCCCCTGAGCCCGCTCCTGGCGCGGCCTTCCGGGCGAAAATCGCGAACCTACGCAACGCGCGTCCTTCACGCGCCTTCCAACTGCCATCATCATACCCTGTCTATGCTCAAAAATCCAGCCCCCATGCGGAATTCTCGCATTTCGCGAACCCCCCGGGTTTTCGCCATCGATTCAGGTTCGCGCTCCTCACCCCGCCGCTTCTCAGTGTGGTGATTCATGGCACCACACGCCCCGCTTCGCCCCGGACCGCGTCTGCAAACGGGGCCGTCCGAATTCCCCTGCTCCTTATGTTCTCACCTGCTACCCTGCAACCACGCAACAAAAAACGGGGCCACACCGGGCCCCAAAGTGAGTGCCATGCCGAGTTGGAACCATCCTCGCAGAGCGCCGAGATCGCGGGGCTCATCAGCCCGCCGGGCTGAGCCGTCACGCCTCCACAAACTGTTCCTCCTCCGTGGAACCGGTGAGCGCCGTCGTGGACGAAAGTCCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 995-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTT010000007.1 Alicyclobacillus mali strain FSL-W10-0018 NODE_7_length_131963_cov_32.980639, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 994 37 89.2 36 T.G.G.T.............................. GTTCTCGGTGTTGACGGTACGAGACATCCTGCGATT 921 37 100.0 34 ..................................... GTATCATGTGGAGGTGGTATTCATCAAACGCGCT 850 37 100.0 37 ..................................... TGTACATCATCACGCAGACGAACCACAAGCGATTATG 776 37 100.0 37 ..................................... GCGCGAGCTCGACGTCGAGGAGGGCCCGTGGCTTGGG 702 37 100.0 40 ..................................... CTCGGCACGTGGTCTCAACCGCGGGTGCTGTCCAACTATG 625 37 100.0 40 ..................................... CTCGGCACGTGGTCTCAACCGCGGGTGCTGTCCAACTATG 548 37 100.0 38 ..................................... CTCGTGAATTACCAGACGAATTTGAGCTCGTCTGGTTC 473 37 100.0 43 ..................................... ACCGCTGCGCCCAAAGCCGATACCACGTGGGATAATCGCCCTC 393 37 100.0 38 ..................................... GACGACCCGGCGATCGAGATGGCCATCGAATGGCTCAT 318 37 100.0 36 ..................................... GATAATCCACGTGAGCAAAATCACCATGATATTCCA 245 37 100.0 36 ..................................... CTATCGAGCACGTTCAAGGCTTATGAGGGCTACGCG 172 37 100.0 36 ..................................... GAGCGCGCTGCGCTGATACGTCACGGTGCCTTTGAC 99 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 99.2 38 GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Left flank : GCAGCCTTTGGTCCACCTATGCCATCAGCTCCATTGCTGGAGCGGCGTTCAGTGGCTGGATCTCCAAGAGACGCAGGACCGGCGTCGTCATGGCGATGATGATCATCGGATGGGGCGCGACGTTCGCGCCGGTGTTCTGGATCCACGCCTTCACGCTCATCTACGTGTTCCTCGCCTGCGCCGGACTCCTGTTTGGCGGGTATCCACCATTGGCGCGGACCGTCGTCCAGCGCTCTGTGCCGACACAGGTCATGGGACGCATCATGGGCCTACGGGGCTCACTGATTGCACTTGGCCCGCCGCTCGGCTCGTGGCTCGGTGGCATGTTGGACAGATGGTGCAGTCCTTCGGACGCCATCGCCCTGATCGGCATGGCCGTTGTGGCACTCGGATGCTGGCTTGGCTCACGGGATGACTTTCGGAGGATAGAAGCTTAAAAGCGGAATGCATCGCCACGATTAAAGATGTTCGAAGAGGGCGGGTGATTACCGCCCTCTTTG # Right flank : CGAGCGCGCTGCGCTGATACGTCACGGTGCCTTTGACGCTTCAATGGGGCCGCCGACGATCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 30439-31504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTT010000007.1 Alicyclobacillus mali strain FSL-W10-0018 NODE_7_length_131963_cov_32.980639, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 30439 37 89.2 36 ...A...G.............G...T........... GGAAGACCTCGAGCACCCACTCTTCGCCCGCAAGCC C,C [30448,30452] 30514 37 100.0 36 ..................................... ATAAATAAGAAGATGGGAGCGTGGTATTATGGAATT 30587 37 100.0 35 ..................................... ATCGCGCCACGAACAGCCCGTCGTCATCCTCATCG 30659 37 100.0 35 ..................................... GGACGACGAGTTATTATTGATAGTTCTTATCAGAA 30731 37 100.0 36 ..................................... CAATTGCGGATCTAAGGAGGTATGGACATGTCGGAC 30804 37 100.0 36 ..................................... ACCTTAGCTAATTCTGATGTTAATTCTTCGTTAAGT 30877 37 100.0 35 ..................................... CCAATCAGTCTGTCTTTATTACTCTTATAGTCTAA 30949 37 100.0 39 ..................................... GGAGCCGGATGGCGCGGTCGTCATCACCCTCACCCGATG 31025 37 100.0 40 ..................................... GTTCGCGCGCGAGGCGTATGTCGATCCGGCAACCGGCAAA 31102 37 100.0 36 ..................................... CGGGCACGATTGTCGCCGCGTTCGCGAGCCCGGCAC 31175 37 100.0 36 ..................................... TTCTGTTCAACCTGGAGAAACGCGCGGAGCGGAAGA 31248 37 100.0 37 ..................................... ATTTTCCGAAGTGTCTCCCACGTCTCTGGCGTGTCAC 31322 37 100.0 38 ..................................... TCCTGCGTGAAGCTACCGTACATATCATGCACCGCCCT 31397 37 100.0 34 ..................................... AGTTTCCTGCCTGATATTGCGGGCCGACCGGCAA 31468 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.3 36 GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Left flank : GTAATGTTCGCGCATGGCCGCAAGTCTCATCATCTTGTCATCAATGTGGCGAATCACGTCCTCAAGCAAGCGCACGGATTCCGAAAGCATTTGGACGTTGTGTTCGGGCTCCCGACCTTCTGAGATGCGCGCCCGATAAGCCTTCAACTGGTCTTCTGTGAAGAGAATGGACCGAATCTCTTGCAGCGAGTAGCCCAGGGCTTCCTTGAGGCGAAGAATGTGTTCGATGCGTTCAATCGTGTCTTCGTCATACACCCGATGTCCACCCGGCGTTCGCGGAACCTCAGGAATGAGACCCTTCTCTTCGTAATAGTGGAGCGTGCGCGGCGTGACACCCAAGCGTTCCGCCACGGCTTCCACGGTCCACAGTTTGCCGCGATCCATCTTCCACCTCCTCAGCTTCTGCCGCACCCCAGTGTACGCCAATCAGAAACTAACGTCAACGTGAGGTTTAGGGCGCGAATACTCACATCATCTGAATTGAATCGGGTAGAAGGGAC # Right flank : CTCCACGCTTCACAGCCCACTCTTGGCGCGGTTTTCCGGGCGAAAATCGCGAACCTATGCGTCGCGCGTCTTGCACACGCCTTCCAACTGCCCTCATCATACCCTCTCACCGGTCAAAAATCCAGTCCCCATGCGGAATTTTCTTATTTCGCGAACCCCCTGGGTTTTCGCCATCGATTCAGGTTCGCGCTTCTTGAATCGTTGCAGGCAGACGCATGTACCATGCATCCCTACGCAGATGCACTCGTTCGATGAAGGTGCCCTTTTTAACTGCCCCTGTACCGAAGAACTCGAGTTATCGTGTGCCACACGTGCACCAAAAACACGTTCTCAAGCTCCCCATCGCGCGCTATAATATCTCTTCTACTCCCAATCTCAACATGGTGAGATGTAAGGGGGTGGCCAATGAGTGGTTGCTCTCGCTGCATACGTTCTCGTAGCGGTCTTTGCGGCGTTGTCTGGGTTGAACGATGGAGGCAATTTGCTCGCGGTGCTCGCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 192810-190482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTT010000003.1 Alicyclobacillus mali strain FSL-W10-0018 NODE_3_length_201388_cov_33.765198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 192809 37 100.0 38 ..................................... GGAACTCCAGTCGACCGGACGGAAAGACCGATTCGGAC 192734 37 100.0 37 ..................................... GCGCTCGCGGTGGACGGCAGTGAGGATACGATTCCCA 192660 37 100.0 37 ..................................... TGTAGTGCGGGCGGAAACACAGACCTTCGTTTCGCAC 192586 37 100.0 35 ..................................... CTCATCGTCCATATCGCATGCAAGCAGGCGATGAA 192514 37 100.0 37 ..................................... ATGGTCTCGCGGAGTATCCGCACCGCCGCCACACACA 192440 37 100.0 39 ..................................... CTATTCACTACCCATTAGATTTATTTTCTATCTCCTATA 192364 37 100.0 37 ..................................... AAGAGAGGCAAGATGGAATCGAATCTGCTCGGCAATA 192290 37 100.0 35 ..................................... CAATCCTCTTCCCGAAGCGCCTCCATGAGCTCGCA 192218 37 100.0 36 ..................................... TATTAAATCCCATCTCCTTTCATCTTCGTCATCTTC 192145 37 100.0 38 ..................................... GATGACGACCTCGACCAACTGGCGTGAGATGTGGGACA 192070 37 100.0 36 ..................................... AGGATGTTATTCCACCTACACCACTTAGATTTAGTC 191997 37 100.0 35 ..................................... TTATTTCCTCGCATCTTTTCCGGAGGTGCGCCGGT 191925 37 100.0 36 ..................................... GCTAACTTCTCCAGCTCCTCCAGTGTGAAAGACTTC 191852 37 100.0 35 ..................................... GAGTGGCTGCTGAAGATTGACGAAGGCGGTGTGGA 191780 37 100.0 38 ..................................... CGGCGGTGCTGAAACACATCCCCATCATCGACATCACG 191705 37 100.0 36 ..................................... GGATTACTGTGGTTGGTGTCGGGCCTCCGCAGTCTG 191632 37 100.0 39 ..................................... GTGCGACGCAGGTCTGGGTCGAGCCATTCGCCCTCTGAC 191556 37 100.0 37 ..................................... GAGCGGGGAGCAGCCCGCCACGAGCTTCACGCATGAC 191482 37 100.0 35 ..................................... GGGTGCTGGAGTACGTGCTTCGGCACCCGGACCAG 191410 37 100.0 39 ..................................... TGCCGCTTCGATAGGTTCCGTAGATTCCTCGGAGGCTCG 191334 37 100.0 36 ..................................... ATTACGCGCAGGTTCGCAAGGAAGATAAGCGACGCG 191261 37 100.0 36 ..................................... TCGTCACCCGGCGACCAGCAATCGGTGCGTATCACC 191188 37 97.3 38 ................T.................... CAGTAAACGTGACCCGCGGTATCTTGCTACCTTCGCAT 191113 37 97.3 41 ................T.................... CCGGCGGCGCGCGTCGGCGTACAGGTGGGTAGCGTCTCGAC 191035 37 97.3 36 ................T.................... CTTATATATGGGAAATAGAGGGATAACCTGCCTATC 190962 37 97.3 38 ................T.................... CATCAACCAGGAGAAGAACGCGAGCAAGTATAGCGAAG 190887 37 97.3 38 ................T.................... GTACTCGGTCTCGTCCTCGATCACAAAGTCGAGTTTGC 190812 37 97.3 36 ................T.................... CTACATCCAGGATGATCCTGAATGTAGTGGATTGCT 190739 37 94.6 37 ................T...A................ AGACAACTCAACATTCGTTAGGTGTCTTCCGAATTCT 190665 37 97.3 38 ................T.................... ATCCTGCACACATATGTCCTCGGTTGCACCGAGGACAA 190590 37 100.0 34 ..................................... ATTATGGGACAGACGGAAAAAACGCCATTGGGCA 190519 37 94.6 0 ...........................T.....T... | C [190487] ========== ====== ====== ====== ===================================== ========================================= ================== 32 37 99.1 37 CTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Left flank : CTCATGTTGGTAACTACATCCATTGACCAACTCGCTCATGGTAAGCCAGGTGGAATGCGTTCGTGTCGGCAGCATCAACCTAGCGCGCATTCCTCGGCTGTTACCCAGAATGTCGTGAAGGCTGAGAACTGAGAACTGTCGCGATGGACTGACTGGTAAGCGTCACGCGACTTAAGCAGATGCTATATGGCTCGCCATATGGCATCGGGGAGCAGGGTGCGAATCCTGCCCCATCTAGTAGAACCACCCGTCGTCTCGCGTCGCCGCATGCTGCACAGAGAACGCGGGCAGCCTATCTTCACGGAGCAAATTCGCGAACCTGAATCGGTGGCAAAAAGCCCGGGGTTTCGCGTTTTACTCGAAAAGCGCGCCAAATCTGGACTTTTTCGATGTGAGGAGGTATGATAGGTGCACAGGATTGTGGTTCAAGGGCGACCTCGTGTGGAGGTTCGCGTTTTTGACCCGGGAGCCCGCGTCAGGACCGGGCTCAAAGGAGTGCC # Right flank : CTGCTCTCCTCTACATGTCTACCGCTGTCTCGCACCATGGAAAAAGCCGCTCCGCATCGGAACGGCCTTCCTGTGCAAACCCATCTCACCGATAGACGTCTCCCCCGCCGGTCCGGAACGCCTCGGCCTTCTCGCGCATGCCTTCGGCGATCGCCTCCTCGGGCTCGAGCCCCCGCTCTTGTGCGTACGCGCGTATGTCCTGCGTGATCCGCATGCTGCAGAACTTCGGCCCGCACATGGAGCAGAAGTGCGCGGTCTTCGCGGGCTCCGCCGGCAGCGTCTCGTCGTGAAAGCTCTCGGCCCGGACAGGATCGAGCGCCAGGTGGAATTGGTCACGCCAGCGAAACTCAAATCGCGCCTTGGAAAGCGCATCGTCCCACTGCTGCGCTCGTGGATGGCCCTTCGCCACGTCTGCTGCGTGCGCGGCAATCTTGTACGCGATCACGCCCTCCTTCACATCGTCCCGGTTGGGCAGCCCAAGGTGTTCCTTCGGTGTCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 76962-79561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMTT010000009.1 Alicyclobacillus mali strain FSL-W10-0018 NODE_9_length_112673_cov_37.568497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 76962 37 91.9 37 ...GA.C.............................. GAGACGCACAATTAGTGGTGCGCATGACGGACGCTAT 77036 37 100.0 36 ..................................... TATGACGTGGATGCTACGGGGCATCCGATGGATCTC 77109 37 100.0 37 ..................................... GCCATCGTATCCCGGCGGAAGAGAAACCGTGAAGTCA 77183 37 100.0 38 ..................................... AGCACTTGCATTACCAACCCCATCGTAAGCAACCACAG 77258 37 100.0 35 ..................................... GAAACGCGAACGGCAACGACAACTACGCGCGAAAC 77330 37 100.0 38 ..................................... GGCCATCGTAGCGTTCGCCTGGAAGTCCAGGTCCCACA 77405 37 100.0 36 ..................................... GATTTAATTTCGCTCCTGAGCCACTTTGAGTGCAAG 77478 37 100.0 33 ..................................... GATCGGCAACAACACGGCAGAAATCACCATCCT 77548 37 100.0 38 ..................................... ATCTGAATTCTATATACAGGATAGGTATAACAGTCTAA 77623 37 100.0 35 ..................................... AGCTTAAAGCGGGAAGATGTCTTCCGCCAAGAGAA 77695 37 100.0 35 ..................................... GAAATGGCCGGGGTCAATACGGGAGGTCGGTATAC 77767 37 100.0 37 ..................................... TCAGGCAATTCGGGGAGGGGACCCTGGTGAACTTTGT 77841 37 100.0 36 ..................................... ATTGAGGACTATCTTAGACATTATGCAGACGATCCT 77914 37 100.0 40 ..................................... GACCCATGCCTCAAGTTTCTCAAGAGCCAACACAGATAAC 77991 37 100.0 34 ..................................... AGGGTACTTCGTACTCGGTGTCTGTCGTGCCTGT 78062 37 100.0 36 ..................................... CTATCGCCTATCGAGACCGATGTAGTGTCTAATCAG 78135 37 100.0 36 ..................................... GGAGGTAGGCGACACGTGACACATCAAGCGCATTCC 78208 37 100.0 38 ..................................... AAGCAAGAAGGAAGGTGAGGCACTGTGTTAGACATCAT 78283 37 100.0 37 ..................................... GCCATCGTATCCCGGCGGAAGAGAAACCGTGAAGTCA 78357 37 100.0 38 ..................................... AGCACTTGCATTACCAACCCCATCGTAAGCAACCACAG 78432 37 100.0 35 ..................................... GAAACGCGAACGGCAACGACAACTACGCGCGAAAC 78504 37 100.0 34 ..................................... GGCTGCGCAAGCGTCTTATTCAGCCAGATGCTAC 78575 37 100.0 35 ..................................... TATCATGCACCGCCTTCGAGCGCCGAAATCACATT 78647 37 100.0 38 ..................................... GGCACCCCAGCGCCGAACGGGCTTGAGGACCTGTGGGC 78722 37 100.0 35 ..................................... TCAGTGCCTCGACCCGTAAAGCTTGGGCGTTTGGA 78794 37 100.0 37 ..................................... CCTGTACTGTCAGCGTCTCAATGAGCATGTTCTGGTA 78868 37 100.0 37 ..................................... TTGGTCGGATGCCCTGTTCCGTCCTCAAAGTCCTTCA 78942 37 100.0 36 ..................................... GAATACGGTCACAGCGGAAATCGTGGCCCGTTCATA 79015 37 100.0 36 ..................................... TCAGACACCGAAACCGTATACGTTGTACCTGGCTTC 79088 37 100.0 36 ..................................... GGAGTATCCGCGGCAGTGTGTCTTTATCGGCACGAC 79161 37 100.0 36 ..................................... GGGCCTTTTTGTTTTGTCTTCGCCGACATTGATCGA 79234 37 100.0 35 ..................................... GACTTGTCCACCGGACAATACCATGTGGGCCTCGA 79306 37 100.0 36 ..................................... TTCACAGGCTGCGTCGCAAGCTGCACATGGGGCGCG 79379 37 100.0 36 ..................................... ATATGGGCGGCAATCCTGGAACTACACGAGGCGCAG 79452 37 100.0 36 ..................................... ATTGATACTGAGTTGTGGATGATGCACCTGCTAAGT 79525 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 36 37 99.8 36 GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Left flank : ACGCCAAGTATAAGCTTGGGACGCAGCTCGGGGCCAATCGGCTAGCAGCCGTCGGCATCTCCGTACTCACCGCAGCACCGGCATACGGTGGAAACCGGCTCGCAATCATTGGCGGGCATTATGATAGCCAAGGATTCTCTCTTGCATGGCCTATATGGAGAGAACCAGCAACTTTGTGTTCCATTCGATGGATGCTCGCGCATCCCGACTTACGGACCGGGGGCCTGCGCCCGCTCGGGGTGGAGCAGGTGATGGTGTCGCGGCGCATTCAGTTGGACAAATACTTCAGCTTCACGAGGGCCCAACCGGTGAGTGCTATGGGCAGTTGAGCGGACGGACCCGCTAGGCTTCAAGTCGAGACGAACCCAAAGGCCACCTTCAGACACCGCCATCAGGCGCATCTGCAGGTGGCCTTTGTGTGCCCAACAACACCTTCAGGACCAGCCAAAAGTCTTCGAAGATCCATGAAATGGGGGAGGAGCGCTGGGAGCGCCCCGACT # Right flank : CGCCATCCCCCCGGAGCCCGCTCCTGGCGCGGTTTCCCGGGCTAAAATCGCGAACCTGCGCGGCGCGTGGCGTTTACACGGCATCCAACCACCTTCATCATACCCTCTCAGCGTCAAAAAATCCAGTCCTGACGCGGAATTTTCGTCTTGCGCGAACCTCCCGGGCTTTCGCCATCGATCCAGGTTCGCGCACCGCTCTCCAGTGCCCCGTACGAACACCCGAATGCCTCAACGCCTTGTTTGTGCAGAATCGATGCAGGATTCGTTGAATTCAGGTCGAAATGCTACTTCCATCGCTTGAGCACCGCGGATGTGCGTGCCGTCTCCCGAGGGGCCCTCACCGCATCGTGGCCGAGCAGTGGAGCTGCCCGAGTGCACTATGCTACCTCGGATGCACAGGCGAACCGCTCTCATGCGTCGCTCGTTGCACGCGAATTTCGTCCATGCAGATTTCCTCGCAGCGCGTTCCGCGGTTCACGCGCCGGTGCTTAACATCGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCCGACGATCTCGGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.00,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //