Array 1 8380-8135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000151.1 Leptospira kirschneri strain 56611 Contig151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 8379 30 100.0 42 .............................. TACGCTCGACTGGACCTTTTGCCTTTGGTCGTCCTGTTTCTT 8307 30 100.0 42 .............................. AAATTTTCCGGGAAGCGGAGCGCCATACGTAAAGAGTTTCTT 8235 30 100.0 41 .............................. TTTTTAGGATGGACGCACTCAACGAAACAATCTCGTTTCTT 8164 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 4 30 100.0 42 CCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : | # Right flank : TTTGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTATGTGACATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGACCTTTCTTTCTCTATCGAAGAGAAAGTAAGTTGAAACTACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTAAAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGCTAGAATTTGACGTTACGCGAAATGGATCGACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACTAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 22729-23981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000198.1 Leptospira kirschneri strain 56611 Contig198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 22729 37 100.0 35 ..................................... CAAGTCGTTGGCAATGATAAGCTCGGCAACATCGG 22801 37 100.0 36 ..................................... TTTCGAACTCAATCACCCAAACCCAAGGGTTTATAC 22874 37 100.0 34 ..................................... AATACTATAATTATCCCAATGTCCTATATACCAT 22945 37 100.0 35 ..................................... AATATGCAAAATATGGAAAAGTGAAAGTAGGCGTT 23017 37 100.0 35 ..................................... ACAAACATACTGTTCGTCTGCATCAACAATCTCTA 23089 37 100.0 34 ..................................... TTGGATTGGTGGATTGATCGGGACACCGGACTAC 23160 37 100.0 35 ..................................... TTAATGTCTGTAAGTTATACCCCCCTAACACTGAA 23232 37 100.0 34 ..................................... ACGATGACAACGGAAACGGTTGTCACCATTACGC 23303 37 100.0 33 ..................................... TTTTTTGGGCCTTCTATTTGCGCTCGTTTTTGT 23373 37 100.0 35 ..................................... TTTCGTAAGGAGACCTATAGACTCACTCGTATATC 23445 37 100.0 33 ..................................... ATTTTCGCTTTTTGTCGTTTGTATAAGTTCTTT 23515 37 100.0 35 ..................................... AACACCTAAACGTTTTTTATCTCCTCTTTTGTTTG 23587 37 100.0 35 ..................................... AATTCTCGAAACGGATTTGAAAATCCCTTTTGCAT 23659 37 100.0 36 ..................................... GGAATTTACTTTCGTTCTTAGCCGGTTTTGCGGATC 23732 37 100.0 33 ..................................... TACGACCTTAAGGGCAATCGATTCTTCTTTCGT 23802 37 100.0 35 ..................................... GATCAAATTGGGATATGATTGAGCAAGACCGCAAT 23874 37 100.0 34 ..................................... CCGTCATTCCAGCGGAAACAAATTCGGATCGGAC 23945 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 100.0 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : GAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGCT # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTTCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGCCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTTAACATTCTAAATTTCAAATGAAAGTATGAAATTTTCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTTTAAAAAACGAACCTTTATAAAATTACAAATTTTAGCTACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTTTTTTTCCTCCGTTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 66-457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000246.1 Leptospira kirschneri strain 56611 Contig246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 66 37 97.3 36 ................A.................... CTTATAAAGTCTTGGGTCTTCCGCGTAACTACCTCT 139 37 100.0 33 ..................................... ATACAAACACCTCGCCGGAATGCCTGGGAGTTG 209 37 97.3 34 ................A.................... AGGACCCAGCAGAGACGCACGTCACCTCTCTCTC 280 37 100.0 34 ..................................... ATTTTGATCTCGGCGAGTTCCGATCCTGTGAGTT 351 37 100.0 33 ..................................... TAAGTCAAAAGGTAAAACTACAAAGCGTCGTCG 421 36 83.8 0 ................A..........T.-.CA...A | G [446] ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 96.4 34 ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Left flank : TTTCTCTTATTGAAGAGGAAGTGGATTGAAACAAAAAATTAGCATTTAATAAAAAAATTGCTTTAA # Right flank : AAACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 64-1746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000206.1 Leptospira kirschneri strain 56611 Contig206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 64 37 100.0 34 ..................................... CTGTTTGATCCATGTTATGCTCCCAAGTCGCCGA 135 37 100.0 33 ..................................... TGTTTCTAACGCTCGCGGTGCTCATGTTTTTTG 205 37 100.0 33 ..................................... ATTTGGTTCCTAATTGCAGGCGGCAGCTTTTTT 275 37 100.0 34 ..................................... AACAAATATGGATCTTTTAAATCAATGCCATTTT 346 37 100.0 35 ..................................... TATAGATAAATTTGGAGAAAAGAAATTCTTAGAGT 418 37 97.3 35 ...................T................. TGCTCTCATAGAGTGGCAAGCAGGAAAGACTGCAT 490 37 100.0 34 ..................................... TCGCTTATAAGGATGGATGCCGCTTTGTTTTACC 561 37 97.3 33 ...................T................. CTGGATTGTTTACTGATTCCTGACGATACACTC 631 37 97.3 33 ...................T................. AAGATCGTCTCAACTTGATCATAATGATCCTCC 701 37 100.0 35 ..................................... TATTTACGGTTGGGACTCGTGGGAACAAAACCCTT 773 37 100.0 35 ..................................... CAAGGATTCGTTCCGGGATATGTGCGTGGCTGTGA 845 37 100.0 34 ..................................... TGCAACTGATTCTATCAGTTGCGGGTGTTATGCT 916 37 97.3 34 ...................T................. TGCTTTGGGATTTGGACGAAGATCAAGGGCTTGG 987 37 97.3 40 ..................C.................. GTAATATTTAAATGGAGCGTTGTTAATTGTGATTATCCAG 1064 37 100.0 34 ..................................... CAAACGTATTAAAGATCTTAGTCTGCATCTCATT 1135 37 100.0 34 ..................................... CCTATAACATTGCTGATTGCGGACCAGATTAAAC 1206 37 100.0 35 ..................................... AAGTCGATTGAATACGTCATACACTCTTGGTTTGG 1278 37 97.3 33 ...................T................. ATATATTGGCTGTAAAATATTCTGATCGGTCTG 1348 37 100.0 34 ..................................... CGGAAGGAAAAATACAATTTGCAATTTGGAAAGA 1419 37 100.0 33 ..................................... CTTGACATTGCAAAGAAGGCGAATCTTGAATCC 1489 37 100.0 34 ..................................... CAAACGTATTAAAGATCTTAGTCTGCATCTCATT 1560 37 97.3 34 ...................T................. TTTTTCTGGAGGTCCTTTGTTTTCCTGTCCTTTA 1631 37 97.3 36 ...................T................. CGGAATATTGGGAATAGTCTTGTCCGTAGTCAGAAG 1704 37 94.6 0 ..........................A........G. | AA,ACAA [1730,1735] ========== ====== ====== ====== ===================================== ======================================== ================== 24 37 98.9 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : CTTCTTTAAAAGGAGAGTGGATTGAAACCTTTAAGAATGATTACGAGATCCACGTTTCGATTTG # Right flank : CCAATCTAGAATAAAGTTGGGATTTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCCGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTGTCGTATTCAAGTGTGGAACTACTGGTAAATCCACTATTTGTGAGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTTTCTATCCTCTGGACGTTAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGTACGGTCCTGCAAAGCAGGATTCGCCTAACCTTTCTTACGCAGAATTCGCATTATTTAGTGTAGATTATCGGATTGGATACTTTATTATGCAGCTCAGATCAGCGCGTTAAAATTCCCTTCTAACTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 7904-7657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000266.1 Leptospira kirschneri strain 56611 Contig266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 7903 30 96.7 43 .............................C GCGTCTACAACGCGATACTGTCTTACCAGGGCGGCTCTGAACT 7830 30 100.0 41 .............................. GGTTTCCATGATCGAGGAAATCACTTTGGAAGTCCTGAACT 7759 30 100.0 43 .............................. TTCGATGGTAATTTAAAAAATCAGTAAAACTCATATCTGAACT 7686 30 80.0 0 ......................CATAAC.. | ========== ====== ====== ====== ============================== =========================================== ================== 4 30 94.2 43 TAACTTTGATGCCGTAAGGCGTTGAGCACA # Left flank : | # Right flank : ACCCACAAGTTGAATAGGATTTTAGAATCAAAATTGAACTAAAGCAAAACGCTTTCCTGAATGCCGATCCTTAGAGAGGCATTCGCTGAGTTTTACAGAGGTTTTGTCGTAATTCCCACAGATTTAATATTGAGATCCAAATACTTGTGGGGTTGGTTATGATAGGAAGCGAGATAGCCTTAGATAGCGGAGCATATCGAACGACTCATAGGGAGTGAGATTGAGTTAAACCGAAGGCACTTTTGCGTAGTAAAACCGAGCGCCAATAGTAGTGAGACGTTGATTTACCAACTTGACTTTTTGGTAAAGTAGAATGGGTTTCGAGACTTTCTGTAAATATTACGACAATGTGCCGGTTAACTTGTTTTCGGTATCATCCGATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCATGAAAAGATTTTGTTTTCAAACAAACCCCCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGCGCCGGATTCGCCC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACTTTGATGCCGTAAGGCGTTGAGCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1679-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000262.1 Leptospira kirschneri strain 56611 Contig262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1678 29 100.0 32 ............................. ATAAACAAAGAGGTTGATTTCTTTATGGATAA 1617 29 100.0 32 ............................. CCATCACTTGAACGTTACCTTTTCTCCAAAAA 1556 29 100.0 32 ............................. CTTGGGATCAAGATGTTGCAATAATAAAATCA 1495 29 100.0 32 ............................. TATTAATCATAATGGCGGCGGTATGCGTAACT 1434 29 100.0 32 ............................. TTTGTTTATAAGTTCTTTAACCATCATATTTT 1373 29 100.0 32 ............................. CGAGAGAGGAAGCTTCAAAGGCCGGCCTCGAC 1312 29 100.0 32 ............................. AGGGATGGAAGAAAAAGGTTAAGTCTTAACAT 1251 29 100.0 32 ............................. GAGGCTGGTATTCAAAGAATCGATCCGAAGGA 1190 29 100.0 32 ............................. TAGAGATCGGATACGGAGTAAAGATCGGAAGC 1129 29 100.0 32 ............................. GGTATTTGCATTACAAGACCATGTGCCTGATA 1068 29 100.0 32 ............................. ATCCGGTTTATATTGATGACCAGTACGTTCTA 1007 29 100.0 32 ............................. TTGTGACGGTGGTTTTGAAATTGATCCTGTCC 946 29 100.0 32 ............................. AAAAAAATTCAATTAACATTAGAGACATTTCC 885 29 100.0 32 ............................. TAAAGTTCGTGGATTTTCTCGGATGTTATTTA 824 29 100.0 32 ............................. GACGAAGGGCCGATGAAAAATCAGCTTTGGAA 763 29 100.0 32 ............................. AAAGGGAGGCGGCACGTTTAAGCGGGGAACTT 702 29 100.0 33 ............................. GCAGCCGGTTTACAGCCTTACCTGGTTCTTTAC 640 29 100.0 32 ............................. CTGCAACGTTTGTTCGGTGTCGTAAAGATCGT 579 29 100.0 32 ............................. ATACATTCAAATGTCCTTTTGGAAAAATAGGC 518 29 100.0 32 ............................. GCAAAGGTTACCCATCTTCGTTTGGGCCACTT 457 29 100.0 32 ............................. AAATCTTGTTTAAAGTCTTACGGGAACGTTTG 396 29 100.0 32 ............................. CGTATAGCCTGTTCATGGATGGAAAAACAAAT 335 29 96.6 32 .C........................... TTCCGGTCCTCCGACGTATATTGTCCATCCGG 274 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : GCAAAAGCGGAAACTTCCGTGGAGTCTAAAGCCAGATTCTTACTTCGTGACAAATTAAAAGAAACAAGACTGATCAAACGAATCATACCGGATATTATGGAGATACTATATGGTGATCGTGATTTTAGAGAACTCTTCACCGAGCCAGAGGGGAGAGATGTCGCGATTAACTCTTGAGTTAAAAGCAGGCGTCTATGCGGGCAATATCAATCGACGTGTTCGAGAAAAACTTTGGGAAAAAATTATTACGGATTGGAAATCAAATGCTTTGATGATTTATACTACAAACAACGAACAAGGGTATGCCGCATTGTCAAACGGAGATACAACGAGGGAAATCGTGGAAATCGAAGGCATGATCTTGACCCAATTTACGAGAACGGAATCGCCTCAGAAAAAAGGAAAAAAGAAAGTAAAATCGGATCCATTTCCTATTTCAGACGGCGACTGACCAAATTTATCTTGTCAAATGTATCAGAACTACTTAACTAATCTTTAGC # Right flank : AGGTCAATTCCGCCTAACGTCTGACCATCAGGGCATAAAAAAGCCAAGCTGCTTGAGCTTGGCCTATCTTAAATTGATATACCTTAACAAAATATAAACTGCGATGAGAGAAATGTAATGTTTTTTTCCTATTTGAAATCTTCTTTTAGATTTCTTCCTGGCGTTGTTGCCATTAGCAAGGCCTTGAGTGTCCTCAAGACTTTCGTAATAGGGTAGCCTCACGACCGATTAGTATCACTCGACTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11704-13033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000279.1 Leptospira kirschneri strain 56611 Contig279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 11704 36 100.0 39 .................................... ACAGAAGGGGTTTATCAAAAATGATTCTTCAAACATTAA 11779 36 97.2 37 .....T.............................. AATGGTTTGGAGGAGTATTCACTTTTCAATGTGGAGA 11852 36 100.0 36 .................................... ATGACACACTTAAATTTCCAACAGGTGGTTCTCATC 11924 36 100.0 34 .................................... ATACAACTTGAATAGGTCCTCTATTAAGTTGACT 11994 36 100.0 35 .................................... TAGAACCACTCACAGGATCATGAAATCTCTTAGAA 12065 36 100.0 35 .................................... TGAATCCATCGTTTCCATTGGAGTCAATTCCTCTG 12136 36 100.0 36 .................................... ATCGGTTTTTTCCTGGAAGACCCCAATAATTTTGTC 12208 36 100.0 36 .................................... GTTGAGAGATTGATTGATCTAGACGAGAGGGAGCGT 12280 36 100.0 35 .................................... TCGCGTTGTTCTTTTGAGTCCCACTGTTTTAGCGC 12351 36 100.0 36 .................................... GTTTCCTTTCTTGGGTTGTTGCCGATAAACCAGCTG 12423 36 100.0 40 .................................... TTTTGAAAGCGGAATGACCATCGGTATATAGTGTTTCCTG 12499 36 100.0 37 .................................... AAACCACAACCCAACGTAACACTAGACCAATTTCTTT 12572 36 100.0 34 .................................... GATTAGGAAGAATTCCGGCTGGAACTGGTGGAAA 12642 36 100.0 34 .................................... ATCACTCATGCAGATATAACAAAACAAGAGGCAA 12712 36 100.0 34 .................................... TTGGATTGTGGAATCTCCTCAACCGATAATTCAA 12782 36 100.0 36 .................................... TTGCATAGTCGTCAGAGGGAAAAAATTAAAAAATGG 12854 36 100.0 36 .................................... TTTGATTCCGAGCTGCGTAAGATCTGCGATGACTTC 12926 36 100.0 36 .................................... GCTAGTATTGCGTATTGTTTGAGTATTATAAAATCG 12998 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 19 36 99.9 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGCGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACTCTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGGAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCAAATCCTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATATTTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : TCCTTTTTGTATAAGGATTTCGACCGCATATTGCCCTCTGAACTTAACTTTGATGCCGTAAGGCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 530-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000313.1 Leptospira kirschneri strain 56611 Contig313, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 529 37 100.0 33 ..................................... ATTATCGTTAGTCGTATCCTTCCAAACCCAAAT 459 37 100.0 34 ..................................... CCGTTATTATTCGGAATCGGAAACTCTTAGAATT 388 37 100.0 36 ..................................... GAATACGTTGATTCAACCGGTCCAAAACTCCAAAAC 315 37 100.0 33 ..................................... CTCCTCTCCTTTTTTTACAAAATCGTCTGCCAC 245 37 100.0 36 ..................................... ATGATGTGAGGAGGTTACAGAGTGAAAACAAGTCAC 172 37 100.0 34 ..................................... AAGATAAAGTTGCTCTCGGTTTACTTCGGCTAAC 101 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 34 ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTGGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATAGTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAAGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCTTTTGCGGTCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : CATTTCTTTGCGGAGATCCAGAGACAGATAAGTTAAATTTCTTTCTCTTATTGAAGAGGAAGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 100-785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000300.1 Leptospira kirschneri strain 56611 Contig300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 100 37 100.0 34 ..................................... AGGAACACCTATTTGCGCTCGATCAAATTGATAG 171 37 100.0 36 ..................................... TATAACCGCGCCTAGTGGTATTGTGTCTACTGTTAC 244 37 100.0 36 ..................................... TCTGTACTTCCAGCCCCCGAATTGATTACTCCTGAG 317 37 100.0 36 ..................................... ACGACTTACTGGGTTTTTCGAAGGAAACCCTTGCAG 390 37 100.0 35 ..................................... TCTGTTGCCACTTCCGGCGGCCGCTGACGGTTGAT 462 37 100.0 35 ..................................... ATTGTCTCGCTTGCTGCTTTTTGGTGCGCCCAGGG 534 37 97.3 35 ...................A................. AAAGTGAAGCGGGCAAAGCGAAGGCATCCTGGCAC 606 37 100.0 36 ..................................... ACCACCAAACGAACCCGGATTTCGCAAGGAAGTTAA 679 37 100.0 33 ..................................... TACAATGTTCGCAAATCATTTCAGTTGATTTAA 749 37 75.7 0 ...................A......AAAGAAC..G. | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 97.3 35 GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Left flank : GTTTCCAAAGCCCATCCGGTATCTCTGAATAATATTTGTCCATTTCACAAATAAATAATTACGATTCAAAAGTACAACCAGTTTTGAGACCGGCTCTAAG # Right flank : CCAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGAGTTCCTACAATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATTGATCTGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTACGTTAGTTTAAAATCAATTTTAAGGTAGATCCCCACTTTGCAACATGAACAAAAAAGTAACTACTCAGACACATGAAAATAATACGATTCTAATATTTATTTCAAAACTTAAAATGTGGGAACTACCACAAATTATAAGAGCTTTTACACTTTCACAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTCATTTTATAAAAACCTAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 65-955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000331.1 Leptospira kirschneri strain 56611 Contig331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 65 37 100.0 35 ..................................... CTCGTGGATAACTATTCGAAATGTTATTTGATGAA 137 37 100.0 35 ..................................... AAATCCGTTCCCGGAGGAGGTCTGAATTTAGACAT 209 37 100.0 34 ..................................... ATAATTCCTCCGAGCTGACAATTTCTGTTGGCTC 280 37 100.0 36 ..................................... CCTTCCTATTGATCTTTCCGCAGATTTGTTTAGCCA 353 37 100.0 35 ..................................... TTGTCGAGGAGATGAATCTTCCAACGTCGGAAGAA 425 37 100.0 33 ..................................... TTGAAAACGAGAAACGTCCTCGAAGTAACTTAC 495 37 100.0 35 ..................................... GCGTCCAAGGTTACCGAACTCCAAAGCCTTTTGGA 567 37 100.0 33 ..................................... GATTCACAAGTGGTCCTCGACCTGAATAAAACA 637 37 100.0 34 ..................................... TCCAATCTTGATAGCACTGGTAAGCGCGTTTTTA 708 37 100.0 33 ..................................... CGCGTGGTGCAGGTGTTCATGGGTCGAGAGCGA 778 37 100.0 34 ..................................... ATTGGTTTTTTGGTCTTCGAGTCTATCTCTCTAC 849 37 100.0 33 ..................................... TAAAACAACTCCCCCGAAGAGTTTCGAACCTTC 919 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 100.0 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TCTTATTAAAGAGGAAGTGGATTGAAACTGAATTATTTCATATGGATAGTTTATTGTCATAACCA # Right flank : TGAATTATTTCATATGGATAGTTTATTGTCATAACCATTTCTTTCTCTTATTAAAGAGGAAGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 466-66 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000349.1 Leptospira kirschneri strain 56611 Contig349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 465 37 100.0 33 ..................................... CAATTCCCACTTGAATCCGGTGTTCGTTAGAAA 395 37 100.0 38 ..................................... TATTTTCACTTCTATGTTCCGTAAAAATTGCTTCACGT 320 37 100.0 36 ..................................... TTTCGAGATTGAGCACGAGTAAAATGAACACAGCGT 247 37 100.0 34 ..................................... ACGCAAAGGACTATAGAAGTATCTCTAACGCAAA 176 37 100.0 37 ..................................... CTCGACTTTTAGTTCACCGAATTTATTCCGAAGCCAA 102 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 36 ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Left flank : TCTCTTATTGAAGAGGAAGTGGATTGAAACAAGGCGGTCAACATCCATCACAACTACTGTACTT # Right flank : CATTGAAGAATCGATCGCAAGTCCGAGATCAAACTGATTTCTTTCTCTTATTGAAGAGGAAGTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 481-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000420.1 Leptospira kirschneri strain 56611 Contig420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 480 37 97.3 36 ................A.................... ATATCTTAACCCTTCCCATCGTCAAAAAAAAGTAAA 407 37 97.3 36 ................A.................... GATTAGATTACGGAAGTGAGGAGAATAGGACATGAA 334 37 100.0 35 ..................................... TATGATGTAGGTTCTGTGCCTCAATTTGTTGTTTA 262 37 100.0 35 ..................................... ATTCAAATTATTGAATTCGATTCGTTTCTCGTTTG 190 37 100.0 35 ..................................... TTTCGTTACGTGCATCAATCGCACCAACAATCGAA 118 36 97.3 35 ................-.................... AAGACGATCGTGCAAATCACCATCGGACTCACCGG 47 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.8 36 ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Left flank : CTCTTATTAAAGAGGAAGTGGATTGAAACTGATCGAAGCAATGAATCCGGAGCCGCATGAAGG # Right flank : CAAAAAATTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 66-600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000424.1 Leptospira kirschneri strain 56611 Contig424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 66 37 97.3 34 ................G.................... TATGCTTTCCGGATCTACATCCCTTCGATTAACA 137 37 100.0 34 ..................................... ATTTCAATATTTCCTGTAAAGGTCACGGAGTAGG 208 37 100.0 35 ..................................... ACTGGGACTTGTCGAAAGAAGATCGAACTACATTA 280 37 97.3 34 ................G.................... CCTTCGTTACACCTTTAAACGACTTACTCAAGTT 351 37 100.0 34 ..................................... GCGGAAGCGTGTCCAGGAAAATGATTCCTAACCT 422 37 97.3 35 ................G.................... TTTACCAAAATCAAACAATACTGGGATTTATATTC 494 37 100.0 33 ..................................... TTTTCCGAGCTTATCAATAAACGAGAGGATTCC 564 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 8 37 99.0 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TTCTCTTATTGAAGAGGAAGTGGATTGAAACATGTGCAACCTGATCTTGTTTTCGGAGCTCTAAGA # Right flank : AAAGCTTGCGTTCATAACTCGGTTGTATGCCTCTATATTTCTTTCTCTTATTAAAGAGGAAGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 65-597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000429.1 Leptospira kirschneri strain 56611 Contig429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 65 37 100.0 33 ..................................... CCCTTGTAATCAATCTTTGCAAATAGATGGGCT 135 37 100.0 33 ..................................... GGTTTGGTTTGCTCCAGTGGCAGAATACGCCTG 205 37 100.0 35 ..................................... TTTGCAGTCCCTTGTCACGTTAAACGTAAGCGAGG 277 37 100.0 34 ..................................... AATTTCAGTATCTCCGTCCGTTAGAGCGATCGTA 348 37 100.0 33 ..................................... TTTTGATGACGGGGAAGATATAGATGTATATTA 418 37 100.0 34 ..................................... TACTGTAACGTTATCCAAATGATTGTAGGTTTCC 489 37 100.0 35 ..................................... CATGCTGGAATTCAAAGTATCTCCTTTGAAGTATT 561 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 8 37 100.0 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TCTTATTAAAGAGGAAGTGGATTGAAACTGAATTATTTCATATGGATAGTTTATTGTCATAACCA # Right flank : ATTTTCCTTCGTATATGCGGACCCGAGAGCAAGATTTCTTTCTCTTATTAAAGAGGAAGTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 29054-28160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000072.1 Leptospira kirschneri strain 56611 Contig072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 29053 37 100.0 35 ..................................... ATCTCGGTTTGTCCGGAAAAAACTTCTTCACAAAC 28981 37 100.0 35 ..................................... ACGGTGGCCTACAATACATTTCCAAAAACCATCTT 28909 37 100.0 33 ..................................... CTCCAGACATTCGTTCATGTCGCAAAAACGCAA 28839 37 100.0 33 ..................................... GTTTGATTGCCGATCGGACCGGAAAATACGCTG 28769 37 100.0 34 ..................................... CTTTCTCTTCATGCGGTAAATTCATGGATAGTAT 28698 37 100.0 35 ..................................... GTTGTTATTTATCTCAGTAGTAGCGGAACCACCTG 28626 37 100.0 34 ..................................... TTGTTTCCCACAAGATCGCGGAAGTAAATTCGAA 28555 37 100.0 36 ..................................... GATCTCCTTGCTGCAAATAAGCGTGTTCGTGAATTA 28482 37 97.3 35 .............C....................... ACTTCGATCAAGAAATTTGGTTATGAATCTCTTTT 28410 37 97.3 33 .............C....................... ATATTCGAATATTCCGAAAACTTTAAGTCCGAG 28340 37 97.3 36 .............C....................... TTTTGTTCCTGCGAGCCAAAGATCAAATCTTCCACT 28267 37 97.3 33 .............C....................... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 28197 36 78.4 0 ..........A..G...G..G....C....A.-...G | TT [28169] ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 97.5 34 GTTTCTTCCTCTTTTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCCGCTGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTATAGAACCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTTTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 530-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHH01000066.1 Leptospira kirschneri strain 56611 Contig066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 529 37 100.0 33 ..................................... TAAAACATTCCAGATCGGCAATATGGATTTTGA 459 37 100.0 36 ..................................... AATTTGATCGGTGAAACTAAACTGATACACTTTTTT 386 37 100.0 33 ..................................... TTTGTGTTGTTCCGTAAGTGGTAACTGTGGTTT 316 37 100.0 34 ..................................... ACGAGGACAAAGGTTTTCTGTGGAATGGGGCCTT 245 37 100.0 36 ..................................... ATATAGCATGACCTTCCGTATTCGTTTTGATTTTGC 172 37 100.0 34 ..................................... TTTTGCGAATAGTGCCACGCTTCCGAGAGTACGT 101 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 34 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : ATTCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAAGCCCTACAAATTTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAGTGAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCGTCTCAACAAGAATGAAAGAACCCTTGAATTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAGTCGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCAGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : CTTTTCGTTCGGGTCCAACCCTTTTGCCTTCCATTGTTTCTTCCTTTGTTTAAGAAGGAAGTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //