Array 1 49276-49607 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQP01000045.1 Planobispora rosea strain JCM 3166 sequence045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49276 29 100.0 32 ............................. CAGCGGGACAGCTCGGCGGTGGCGGTGTGCAG 49337 29 100.0 32 ............................. ATGAGCCACTCCAGCGTCAGGTCGGGGGCGGG 49398 29 100.0 31 ............................. AGCACCACGACGACGCCCCCCAGGCGCCCGA 49458 29 100.0 32 ............................. TTCGACGGGCCGCTGCGGGTTCTACTGTTCGG 49519 29 100.0 32 ............................. ACCCTCAAGCACGGCTGGGGCGTGGCCAAGAC 49580 28 86.2 0 ...........A..T..-.......A... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : GTACGAACCGTCAGTAGCCGTCACCGACAACCGCCGCTGACGTGCGGAAACGGCCCCGTCCGGCACCGCCGGTCATGGGCCGTCACGGGGCGAGGCACGCTCATAATCCCTTGGTCGCGGGTTCGAGTCCCGCCCGCCCTACCCCTGCCAGCCTCTACAAGAGTGCCCCTGACCTGCGTGTTTGCACCCTGAAGATCTCTCGCCGTATCCGGCGGTGTACGGCTGTCGCCGGGCCATTGCGGCTTGCTCTTCCCAATGCCTTCCCGCAGGATCATGCCTTTTGAGTGCCTTGGGAATCCGGCGTCGGGCGGCCTCGTCCTAACCTACGATGCACTTGGCGTAGATCCGTAGGAGGACGTTCATGCTGCGGCCGGCCCACTGGACAACTCTGGGGCGTGGAGGCCTCAGAGTTGTGTCAGGCCGACACACAGGCGTGTTGGAAGTCGTAGACCTTCCCTCGGAAACTTCAAGTGTGATTGTGAAATAGCAGGTCGGGAAGT # Right flank : GAATCGAATCAGGACAGCGTAACCCTGAGACGCTTTCGCTGTGTTCGGCTGTCGTCGATCTCCTGCGGTTTTCCCCAATGTCTCTCACAGGATTACGTCTCCTTGAGCGCTTCGGAGATCCGGCGCCGGGCGGTCTCATCCTGGCCCACGATGCATTTGGCGTAGATCCGTAGAAGGACGTCCACGCTGTGCCCCGCCCACTGGGCGACCTGGGGCGCGGGAACCCCGGCGTTGAGCCAGGTCGACACGCAGGCGTGCCGGAGGTCGTAGATCCGCCTGGCCAGAGGCAAGGCGACCTCCTGGGGGGTGAGGGCCTGCTCGCGCGCCGCTGCCCACGCCCGCCGATAGGTGATGGCGGGCAGATCCCCACCCTTGACCCCGTAGAACAGTCGACCGTCGGGGTCATCGCCGAACTCGGCGAGGTGCGCACGGAGAATCCTGGTCAGCTCCGGTGGGCACGGTACGGAACGCGCCTGCCCGTCGGCACGGTGCTTGAGGGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63624-63295 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQP01000045.1 Planobispora rosea strain JCM 3166 sequence045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63623 28 79.3 32 AC....A..C.-.A............... CACGATGAGGCGGGGTCGTAGTACGCCCACGG C [63620] 63562 29 100.0 32 ............................. ATCGGGTCTGCGGGCCGGACGCGATACGCCAC 63501 29 100.0 32 ............................. CGCAGGACGGGGCTGGCTTCGCCGAGCTTGCT 63440 29 100.0 32 ............................. ACGAACCGGTCGAGGCTGGCGCGGATGTCACC 63379 29 96.6 29 .......................A..... CGGGGAGCGGGGAGGCGGTCCGTCATGCT 63321 27 82.8 0 ...AC...............A..-.-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.1 32 GTGGTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TCCGATGCCCTCGGAAAGGCCGATGATCTTCCCGAAACTTCGGCATGTATTCGGCACGATCAACCGCCAGAGGCCGACGACGATCGTTGACGGCCGGACAGCAGAAGAGCGCCTCAGGCCACAGAAGTGCAGGTCAGAGGCGCTCTCGTAGAGGTCATCTGGGGTAGGGCGGGCGGGACTCGAACCCGCGACCAAGGGATTATGAGACACCAGGCCAATGAGGCACACCAGCGGTCTCTACCTGGCCAAACGCCTTCTCCCACCCCCGTCCCCCTGGTTTGCGGGAAGACATTGGGAATGATCATGACCGGTGAAGGCTCCAAGCGTGATCAACGAGGACTTGGTACAGACCCGCCTCCACCGGGCTCAAACTTCCACCCCTGACCTCTTCAATGCCCCGCGGGCATGGCAGTGGGCTACCCGTAAGTCAAGTTCACGAACGGCTCACCCCCACGGACGTGGGGAGGACCATCGACGCGTTCGAGGTCGCGTACGGGATC # Right flank : ATAACGGTGCGTCCGCCACGGGTGTCGTCTGGATCCTTCCTGTGCCCGTTGTCGCGGAATTCTGAGACTGACTCCATGGGTGCGCCACTCTAAGAACAGCCGAAAGGATCTAGCTATTAGTCCTCATGAACTCGCATCAATGGTGTGCCGGTCAGGGTTTAGCAGGTTTATGCCATCGTGCTGGCGGATGGCGGGAACCCTCGCGAACTTCATTGCATCCAGGACCCGAACAGCGAATGCTTCCGATGCCAGAGCTCGCACTTCATCAGCGGTGACCCATCGGAAGGCACGGGACTCATCGGTTTCGGCCAGACTGCCAGTAACTACGCGGCAACGAAAAACGAGAGCGACGATGCCGCGAGGCATGTTCTTGTAGACGCCGGTCAGCGCGACAGGATCGACTTCAAGGCCGGTCTCTTCTCGGACCTCGCGGATCAGGCCGGACTCGATGTCCTCGTGTCGTTCGAGGATGCCGCCGGGGGCTTCCCAGTGGCCGTTGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27470-26834 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQP01000050.1 Planobispora rosea strain JCM 3166 sequence050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 27469 29 73.3 31 .G.A..AT.C.-.G...............T CGGCCGTACCGGCGGGGTCCCAGCGGCCGAT 27409 30 100.0 31 .............................. ACCGCGAGGCCAAGGCCGGGATGGAGCAGCG 27348 30 96.7 30 ............................G. TCAAGGCCGCGCTCGACGTGATGGAGACCG 27288 30 100.0 31 .............................. ACTGGGACCTGTCAATCAGCTCCGTCGGCAA 27227 30 96.7 31 .............................C TCGTCGTCAACATCGGCGCCGGGTACGGTCA 27166 30 96.7 31 ...................T.......... GGTGCCCGCTGATCTCGGAAGGGTGGCAGTG 27105 30 100.0 31 .............................. GCCCTCCCGCCCCTCGTCCCGGGATGAGGTG 27044 30 96.7 31 ............................G. AAACCGAGGTCCTCAGCCTGGTACACGGCTG 26983 30 96.7 31 .......................A...... CGCCCAAGCACTGATCAAGAAGCACGGGTCG 26922 30 83.3 30 .................A.......GT.AC TCACAGCCTAATCATCCACATGCAGGCTGA 26862 29 70.0 0 .A.....T........TAA.....-.G.GT | ========== ====== ====== ====== ============================== =============================== ================== 11 30 91.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGGCCGTCGTCTTGATCAGAAGCTGCCACTCCTCAGCTGTCTCCACCTTTCCGTCCCACCAGTAAACGGAACGAATCGGCCCTACGATCTGCACACACGCGGCAAATCGCGCCTCTGTGATGCTTCGCGCCAGGCTTTCCCCAGATTCCGGGCTGTCAACAGTTGTTAGGGCCTGTATGTACTCCATCTCTTCCCCTCTCATCGTCCCCGTGTGCACAAGGGGCACTCTCCCACAATAGAAAGTCAACTGACACTTGGAATCATCCCCGCGTGCGCGGGGAACACCAGGTCTCCGATCAGCTCAGCGGGGCGACGAGGGGATCATCCCCGCGTGCGCGGGGAGCACCCCCACTTCGCCCGCAGCTTCTCCGCCGCCGCGGGATCATCCCCGCGTGCGCGGGGAGCACGCCGCCGCAGGCGACCCCATCGGCTGCTATGAGGGATCATCCCCGCGTGCGCGGGGAGCACTAGCGGCCGGCGCGGACGTCGGCTTCCTGGTC # Right flank : GGTTGCGTCATCCACCCCTTTCCTAAGCGACTCCGCTGCACACCGTCCTGAGTCCGATCCCCGATTCGAAGCGGATTCCGACTTGAACATACGCCGACGAGATCGGCTCGGAAGACCTCCGTGAGTACTTCGTATGCTGTTACTGCATGGATGTAGTTCTCGGCAGGCACACGGTTGTGATTCAGTAGCGTGATCTCGGCCGAGATGTGGACTGCGGACGCCTTCGAACCCTTCCAGTCGTGCGGCGTCGAGGCGGCCGGGAGTGGTTGAATACTTGTTGCTCATAGGATCCTCTCAACTCCGGGAGGCCACGGGAGCCAATTGTGGGAGCCACCGCCTTGCGGCTCCCCCAGACTTCCCGTGTCCTCCCCGGAGTGTTCTGTAAGGTGAGAGGCACCCGATCGACTCAGATCGACATGGTCAGACTTGCCTGTTTACCTTCGCATCGAAGGGGTCAGGGGTTCGAATCCCCTCATCTCCACCAGGACGAGAAGGTCCGG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27502-27772 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQP01000050.1 Planobispora rosea strain JCM 3166 sequence050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27502 29 100.0 32 ............................. TCATAGCAGCCGATGGGGTCGCCTGCGGCGGC 27563 29 100.0 32 ............................. GCGGCGGCGGAGAAGCTGCGGGCGAAGTGGGG 27624 29 100.0 32 ............................. CTCGTCGCCCCGCTGAGCTGATCGGAGACCTG 27685 29 93.1 30 ...T......................T.. AAGTGTCAGTTGACTTTCTATTGTGGGAGA 27744 29 69.0 0 ....C..TT.T....A......C...GAG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : AGGACCTCGGTTTCCGGACCATCCCCGCGTGCGCGGGGAGCACCACCTCATCCCGGGACGAGGGGCGGGAGGGCCGGGACCATCCCCGCGTGCGCGGGGAGCACCACTGCCACCCTTCCGAGATCAGCGGGCACCCGGGACCATCACCGCGTGCGCGGGGAGCACTGACCGTACCCGGCGCCGATGTTGACGACGAGGGGACCATCCCCGCGTGCGCGGGGAGCACTTGCCGACGGAGCTGATTGACAGGTCCCAGTCGGGACCATCCCCGCGTGCGCGGGGAGCACCGGTCTCCATCACGTCGAGCGCGGCCTTGACCGGACCATCCCCGCGTGCGCGGGGAGCACCGCTGCTCCATCCCGGCCTTGGCCTCGCGGTCGGGACCATCCCCGCGTGCGCGGGGAGCACATCGGCCGCTGGGACCCCGCCGGTACGGCCGAGGGACCATCCCCGCGCGGGGATGATCCCGACCAGGAAGCCGACGTCCGCGCCGGCCGCTA # Right flank : GAGGGGAAGAGATGGAGTACATACAGGCCCTAACAACTGTTGACAGCCCGGAATCTGGGGAAAGCCTGGCGCGAAGCATCACAGAGGCGCGATTTGCCGCGTGTGTGCAGATCGTAGGGCCGATTCGTTCCGTTTACTGGTGGGACGGAAAGGTGGAGACAGCTGAGGAGTGGCAGCTTCTGATCAAGACGACGGCCGAGATGTTCCCCGCGCTAGAGAAACACATCAAGGAAAATCACTCCTACGACACCCCCGAGATCATCGCCACCTCGATTGTGGCGGGAAGCCCTGAATACTTGAGCTGGATCAGCGCGGAGACGAAGCGAACTGACGCTTCGTCATAGCCAGCTCTTCCAAGAAGGCCCGCACTGCCGGCTGGGTTCGCCAGCGCCTCAGTGGTTCCGCTATCACCTCAAACCGGGGGAGCCAGATAGCAGATTCAGTCTCTCTGACTGCTCTGAGTCCTTCTCGGGCGAGTTTGGCCGCTTCATCGACGGAAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //