Array 1 83-327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLU01000052.1 Caldibacillus thermoamylovorans strain B4167 NODE_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 83 35 100.0 30 ................................... CTGATGTTTTAGATGGCAATAAAGTTGTAT 148 35 100.0 31 ................................... CTGTTTCAAATTTACCTAAATATTTCATTCC 214 35 100.0 41 ................................... CGTGAATAGGTAATTTTTCGAGATTTCAATCCACGCACCCA 290 34 88.6 0 ...........-....G.........T..T..... | T,GTT [306,315] ========== ====== ====== ====== =================================== ========================================= ================== 4 35 97.2 34 GTTTTGGCACTCTTCCAGTTTTGGGTATAGTAAAA # Left flank : AGCACCTCCTTTGATTGATATGTCAATTTTAACAAGAGGTGCTGTTGATTTATATGCGTTGTTTGAATGGGGGCTTACGATTG # Right flank : ATATCCCCACATTTGAACATAAGTGGGGATTAAGTATTATTTTCTTTTAAATAACTTTTATGATTTTATCATCTTTATTGCTATCTGTGTTAATTTACTTTTCCTACAACCTCTTGTTTTTCATCTGCCGCATATACAGTCACTTCTTTTTCAATCCCCTGTTTATTTACATACCAATTCGCCGCTCCGACAAACAATCCGCCTCCAACAATATTCCCAAGTGAAACAATGAGCAAATTAAAAGCCGCTCCTGTCAAGGTAATAGTATCCGGGTGAGGGACTGATAAAGAAATAGAAAATAACGCCATGTTGGCAATACTATGCTCATAACCGGAAACAAAGAAAGAAGTGACCGTCATCATGATCAACATAACCTTTGCTGCAAAATTGTCGGTTTGCAACGGGAGCCAAATGGCCAGACAAACAAGCCAGTTACATAGAATACCGCGAAAAAACATTTCCCCTGTCGTTAATCCAATCTTGCCTGTCACCGCACTAAA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTCTTCCAGTTTTGGGTATAGTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 18962-21683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLU01000068.1 Caldibacillus thermoamylovorans strain B4167 NODE_88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 18962 36 100.0 35 .................................... CATGCAAACGGATTGTTATATAAATCTTCTTGAAC 19033 36 100.0 36 .................................... ATTGTTCCGGCGGCTAATTTGTCTGCGGTAATCGAA 19105 36 100.0 41 .................................... CTTCGCCATCCTCATCCCTTATCAGTTGATTGCCTAGCGTT 19182 36 100.0 37 .................................... ACACAGAAACCAAATGGGAACACGTTTTCGTTAATAA 19255 36 100.0 38 .................................... GACATTAAAAAATTCCAACCAAGCGAGTTATTGAGTGG 19329 36 100.0 34 .................................... TTATGAGCTTAAAAGCTTGTTAGCGACATTAAAC 19399 36 100.0 37 .................................... GTTTTGTTACAGCTTTATTCCTTACTTGATCGACTCT 19472 36 100.0 37 .................................... CAGAACCTATCTCAAGAGGATGCATTCTGGAAAGGAA 19545 36 100.0 40 .................................... CTTATAACAATAATTTAAAAGCAATTTATGACTGTATAGA 19621 36 100.0 36 .................................... TTTTAAGGGACATCAGAAACACTATAAGCTCACTTG 19693 36 100.0 35 .................................... ATAATCGACTTTGCATTTCTATAGTGTCGTTCATC 19764 36 100.0 39 .................................... AAAATGGAACAAGGAACAATAGACGTTTATAAGTATGGA 19839 36 100.0 37 .................................... TTTCAATAAAGCATCAAACTCTTTTTGCATTTTTTCA 19912 36 100.0 37 .................................... ACCGAGTAAGGAATCGTTTAATCAACAAACTTGAAAC 19985 36 100.0 38 .................................... GGTAGTCGGCGGCTAAGTGTCGCAGGGTTAACACCGAT 20059 36 100.0 39 .................................... ACGCTGAACAAAACTCACGAAACCAAAAGTTTATAAAAT 20134 36 100.0 35 .................................... GGAAAGGATTTACTAGATCTCGCAAGAAAGGTAAC 20205 36 100.0 36 .................................... ATTTAGTATATTGTTGTTTTCATTTGCTTTTTTCGC 20277 36 100.0 37 .................................... TTATACCGTAAAAAATTTTGGATTTGATGTCACCGTC 20350 36 100.0 36 .................................... AGAACACAAAAAGCGGAAAAATTGCACTTATTTTCG 20422 36 100.0 36 .................................... AATACTCGTCTACAAACTTTTTCTGCTTTTCTGTTA 20494 36 100.0 38 .................................... CATACAGGACACTTAAACTCTACTTTACGATTTTCAAA 20568 36 97.2 36 ......................T............. GATTTAAAACTTCTTCTGGCATCCAGTACATAGATT 20640 36 97.2 36 ......................T............. GAAAAAACTGTTTCCTTATCACACCTATAGCAATAA 20712 36 97.2 38 ......................T............. TCTAGATATGTTCAAGAAAATATGCAGTCTATCGGTCA 20786 36 97.2 39 ......................T............. GAATCAATTAATCCAATTTGTTGCAACTTAGGTAGAGAG 20861 36 97.2 38 ......................T............. CCGAATTAGCATCGTACCAATTACATCCATATGATGCT 20935 36 97.2 36 ......................T............. TTTTCTATTTTTATATTACTGTTTGTTTGGTGATAA 21007 36 97.2 38 ......................T............. TGAATCTAACCAAGGAAGAAATAAAAGATATTTATAAG 21081 36 97.2 35 ......................T............. AAAAAGGAGTGTTTCAAAATGGCAAATGAAAAAAG 21152 36 97.2 36 ......................T............. AGCTTGGATTGAATCAAACAATGGTGGTCGAGGTTT 21224 36 97.2 36 ......................T............. TTGAGTTGTAATTAATCACCGTTCTACCTGAAAACT 21296 36 97.2 34 ......................T............. TAGATGTTGAAAACGGCGGTTTTGTCTATTATCC 21366 36 97.2 38 ......................T............. AAACCCGCAAAAAATAAGCTGTTGACGAGTCTAGTTAG 21440 36 100.0 39 .................................... TTGTCAATCCTCGAAAATGCCGGGCGGACGGGCTTGCCA 21515 36 97.2 35 ....................A............... CCACCACCGACGGCGTCCACGCCAATTGCCTGCTT 21586 36 100.0 26 .................................... AACAATATAAACGACTACTTTACCGT Deletion [21648] 21648 36 94.4 0 ..T...................T............. | ========== ====== ====== ====== ==================================== ========================================= ================== 38 36 98.9 37 GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Left flank : CCATCATAAGAATGACCAAGTAATGTTTGTTCACATCGGGCCAGTGAAAGATGGTCAACTATCTAAAAAAATCTCAACAATTGGGAAAGAATTTGTTCCATTGGATTTAAAGCGGCTTATATTTTGAAAAGATATAGCAAAGAAATCTTATGAAAAAAATACAAAAATATATTGTTAAAAAATAGGGAATATTATATAATGGACTTACGAGGTTCTGTCTTTTGGTCAGGACAACCGTCTAGCTATAAGTGCTGCAGGGGTGTGAGAAACTCCTATTGCTGGACGATGTCTCTTTTATTTCTTTTTTCTTGGATCTGAGTACGAGCACCCACATTGGACATTTCGCATGGTGGGTGCTCGTACTATAGGTAAAACAAACCTTTTTAAGAAGAATACAAAAATAACCACAATATTTTTTAAAAGGAATTTTGATGGATTTACATAACCTCTCGCAACATGCTTCTAAAACCCAAGCCCACCATAGCCCAAAACCCCCTGCG # Right flank : CGATGGGATGGGAGAGAGAGGACAGTTCTACTCTTGCTGTATCCAGCTTCTTTTACTTTATCCGGTATCATTTCTTCACTTCTTTCTGCACATAAAAAAGCACCTAACTATTTGGATAAGTTAAGTGCTTTTATTTCCGTTTGAAGTTGTCTATTGCTTTTTTCTTCATATCTTCAAATTTTTTCTGTTTCTCAGAGTCAACTTTACCAACTGTAATCCCTTTTCTTTTTGGCATTGGGGTATCTTTCCACCTTAGTGTGTTCATAAGGCTTATATTTATCACTCATTGTATTCCTCCAACACAATTATAATTTTTCCGTCATCCTCAATCCAACCGTCAACTGTGACAAAAGACGAATCTCTCTTATATAATACTTCTACTTCATTGTCATTAAATCCTTTCAAATCTACTCCGTTTTTTGTATTTATCATTCACGCTAAAAAAAGAAGGTGCTTTGTCTAGTCCTTTCATCGTAGACAAGTACCCTCTTTCATAGGCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Alternate repeat : GTCCAAGAAAAAAGAAATGATATGAGGCATTAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 47270-47503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLU01000100.1 Caldibacillus thermoamylovorans strain B4167 NODE_176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 47270 33 100.0 34 ................................. TGCGTAAAACAGTGAAACCCGCAATCCTTATCGA 47337 33 100.0 34 ................................. TGCTAGTTTGTCCATCAACAATGTGTATCATCGA 47404 33 93.9 35 ..........TC..................... ACTACATTTTGGACAAACTTGAGTAATTGATTGTC 47472 32 84.8 0 ..........TC.T...-..T............ | ========== ====== ====== ====== ================================= =================================== ================== 4 33 94.7 35 GTCGCACTCTATACGGGGTGCGTGGATTGAAAT # Left flank : GTCGTCATTTCCGGTCTCGTCCTATACTCAGTGGTCATGCTGCCGCTATTTATTCCGGTCGTCGTCAAAATCTTCGGCAAAGCCAACTGGTGGCCGTTTGTGGGTAAGAAAGATTAGTACTTGGAAAAGAACTTTTGATCAACCGTTAGAAGGAAAGTATATATAGTCATCTCCTTAAGTTTAAATATAACTAATTAAAAACCACCTCAGAAATGTAATTGAGGTGGTTTTTCGATAAATAATGAAAAATCAATGTAGATTCGTTAATATATATTTAAGGAGAAAATAAGTTAATTTGGTTATAGTCCATGGAGGGAAAAGAAAAATGAAAGTGCGAATAGTAAGTGAACATGATTTCATTAGGGGATTCGCACAAAAAATTACTATTAAATTATCCAGTATTTCCCATTAATGTTAATATTTTTTGTTTTGTTCTTTAGCTACCTAAAGGAAATAGTGTATTTCTGTAATTATTTAATAAAAAAATTACAGAAATCGCT # Right flank : TCGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTATAAAATAACACAGGAGATGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGTTTGGAGGCTTGTTGTTCTTGCTTATTGGTACATGGGTATTCAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAAGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGACTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAGACTTTTAGGGACAGGAATTAAAAGTGGTGATCAGGTCGCTATTTGGTATGAAGAAGTCCTTGAATCGTACCCG # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 72206-73838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLU01000104.1 Caldibacillus thermoamylovorans strain B4167 NODE_185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 72206 30 93.3 38 ...C.C........................ CGATATGCCCATATTGCAGTCATTAAAATCATGAAACC 72274 30 93.3 36 ...C.C........................ CTGGTAAATCATCATCATAATCATATTTCCTCATTC 72340 30 93.3 35 ...C.C........................ ACATATACTATGTATGAAATAACCTATTTCATAAC 72405 30 93.3 36 ...C.C........................ GGTGGATAATGCGTATAGTAAGATATATACAATAAT 72471 30 93.3 36 ...C.C........................ GCAGAACTGAAGCTTATAGTTTACTTAATGAAAATG 72537 30 93.3 38 ...C.C........................ GCCGGCGACATAATATGCTACTCGAACAGTTCGAGCGC 72605 30 93.3 35 ...C.C........................ TTTTGGGGGTAAAAAATATATGATACCTGGACAAG 72670 30 93.3 38 ...C.C........................ TGAAATTGTTTTAGATAGGTTGGAAAGTACGGCAACAG 72738 30 93.3 39 ...C.C........................ TCATATATCCTAACCATAAAATCAGAAGTAGCTTGTCGT 72807 30 93.3 35 ...C.C........................ AGCAATAATGCACGGTCTTTTGGCATGTTCAAATC 72872 30 100.0 37 .............................. TCAATATAATCACATATCAACTCACGCAAAAATTCAC 72939 30 100.0 37 .............................. TAAATCTGTACTCATTCATCACACCATTTTTTTCTTT 73006 30 100.0 36 .............................. CAGGGAACAGAAAAACAAGTAGCTTGGGCTAATACA 73072 30 100.0 37 .............................. ACATCAAACCCCTTTGACAATCTTTCTTGCTTTTTAT 73139 30 100.0 38 .............................. TTTTTCACCTCTGGAATAAAACACATTTTCCTCTTTAG 73207 30 100.0 37 .............................. ACTTCTTCAAGTTCCTTCTCTTTCGCCGACAATTCGT 73274 30 100.0 35 .............................. TTTGTATCACGGTTTGCAAATAGAAGGAGACATTA 73339 30 100.0 38 .............................. TCTCTAATATAAGCCATATCAAGCCCTATCTTGATATG 73407 30 100.0 37 .............................. CACAATGGACAATCAATATCCACGTACTCGATCCTAT 73474 30 100.0 36 .............................. AGGGCATGTCTGCCGAAAGTATCTTTATAGTAAATA 73540 30 100.0 36 .............................. GACAGCGGAGAGTACACCAGACACTTTGACGCTGAG 73606 30 96.7 37 .........................A.... TTGACGAGAAATGTCTCGGCGAATACTCGGCGACTCT 73673 30 96.7 38 .....C........................ GTGGGATTCAGAAGCCCTTGAAACGTATGTGGATTCAG 73741 30 93.3 39 .....C................T....... GAGAATCCCAAGAGTGTTTAAAAAGCCTGATGGTGCCTG 73810 29 83.3 0 .....C...-.C.....A..A......... | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 96.1 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : GATTCGGTTATCATTTATATGTTCCGCTCCAAGCAGTATACAGGTAGACAAGAGATGGGATTAAAAAAAGGTGGAGAAGAATTTTTACTATAAACCTTTCATTAATAAATGATTTCAGCATTTCTATTAAAAATTGTCTATGTAAACATACTTTAATAGAAGTATGTTGGTTGTTCACTAAGATTTTGATAGAGATGAGTATCTTTAAATTTGGCGGAAAGAACTAAGTTTAAGCGAAAGTATAAACTTAGTTCATCAGTGGAAGGAACGAAATATATTGTGTAGATAGGTTAATAATATCCTTGGACTTTTTGTCGTCGACCCCCAATAGTGCACAAACCCCGGGAGGTCGACGACAGTTATTTTGTAAAATGATAATTGGAGAAATGCTTAAGCCATCTGGGATTAGGAAAATATAATTGCTAAAAAATAAAATTTCTATTATAATTAATGCAAAAGTAACAAGACAAAGAAATCCTATTAAATCAAGGTTTTTTGGG # Right flank : CTTGGGTGGAGTGATTAAGGGAATTTAAAGGAAGTAATAGAAAGCTAGAAAATTAATCAAAAAAGTAATGTTTATATAATTGGAAACTTATTAATATTTTTTCTTTTTTATCGAAAAAGACCTGCCTTGGCTTTAGATATAATATGAAAGATAAGGAAAATAAAATCCTGATTTACGATGACTCCTGTACAGAACGAACAATAGCCATTATTGAAAAATCTTATTATCGTGATTTAAAAATTGCTGAAATAGCTGAAGTATTATTATAAACAGATTCTATCTTTCGTAAATTTTCACAGGAAAATCGGGTTATACATAAAAAATATATAATTGATTTTCGAATTTCACGTTTCGGAGAGTTATTATTTTTTTAAATTGGCCTATAGAGAAGGTTGGTAAATCAGTTGGGTTTAAAAGGTTCGCCTTTCACAAAGTTTTAAAAAAGATTATAGTATGTCTCCAAGTGAAAAAAATTATGGTTAAATGAATGGGGGTCTGCT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : GTTCACATCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6751-5320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLU01000143.1 Caldibacillus thermoamylovorans strain B4167 NODE_345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6750 30 100.0 36 .............................. ACAAAATCCGCTATCGGCTGTCCTGTTTGGTAGTGC 6684 30 100.0 38 .............................. TTTCACAACATGAGTCAGCGTAATTTGTGTATATTTCC 6616 30 100.0 38 .............................. GTTCATCAGATTGACTCATAGCCGGCGTTGTAAAGGTC 6548 30 100.0 36 .............................. TTCACTGCTGTGGTGATTTTTCCGTTTGCTTCAGTT 6482 30 100.0 37 .............................. AACCCATCAAATTCCGATACGTGTACATCATGTATCC 6415 30 100.0 35 .............................. TGCGGAATCACTACCGACCCGTTGCTTTTGTGCAT 6350 30 100.0 37 .............................. TAGGGAACCCCCTGCTAACGCAGGCACCCCCTTTCAC 6283 30 100.0 38 .............................. TCATTTCTCTTGGTTTATTCATTACCTAACAACCCCCA 6215 30 100.0 37 .............................. TATGGCAGGTATTGACGCCAAGACTGCCTGCCAAAGC 6148 30 100.0 38 .............................. GCAAGTTTGCTAAAGATTTTTACACCAATTCCAATCGC 6080 30 100.0 37 .............................. ATCATAATAGAGCACTTCTACTCCTAGTGGACTATTT 6013 30 100.0 37 .............................. GGTGCAAGTGTCCTTTCTGCAAAGAAGACGCCAACAA 5946 30 100.0 37 .............................. ACCGGTTCATTGTTAATGTAAACTGTTGGCTTCGAAC 5879 30 100.0 36 .............................. AAAGACGTATTCGGCGAGATAGCAAAGACGAAAATT 5813 30 100.0 37 .............................. TCCAAAGACTATCTCCACATTCCGTACAAAAAGCATT 5746 30 100.0 36 .............................. CGTCTTAAGCGGTGGAATAAGGAAGTTTGAACACGG 5680 30 100.0 35 .............................. GAAAGAGAAATAAAAAAAGCAAAATCAAATAATCC 5615 30 100.0 36 .............................. TGTAGTTCATGCTTGTTATGCCCTCCTTCCCTCTTA 5549 30 100.0 37 .............................. AAGTTTTTGGACGTAAACAAATTGTTGTTTTTGATGT 5482 30 100.0 37 .............................. AATCCAATTCATATCCTAAGTTTCCAGCCATGGCTAC 5415 30 96.7 36 .....A........................ CCAGATAGACAAGAATTTCTAAAGACTGTTTATGCA 5349 30 93.3 0 .......A....................G. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.5 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : GCATAATTTGAGTTTTATAGGAATTGGCTCTTTTGGTCCTATTGATATTAATAAAAATTCAAAGAAATATGGTTTTATAACAACTACACCTAAAAAGGGGTGGAATAATTTTAATTTTTTAGGTGTAATGAAAGAACGATACAGTGTACCTATCGCATGGACGACTGATGTAAATGCTGCGACATATGGAGAATATAAAAAAGGAAATGGAAAAGTTAGAACGAGTGTTTTGGTATCGGAATCGGGGGTGGGGCAATTATTAATATCAGGATATTAGAAGGATTTGGTCACCCAGAGACAATACATATTTTTGTCGTCGACCTCCAATAGCGTAAAAACCCCGGGGGATCGACGACAAGTTATTTTGTAAAAAAATCAATAGAAAATGCTTAAATTACGTGTATTTATGAAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAGACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : TGCTTGAGCAAGATATTCTCGAATCACGGATATGGTTAAAGTTGCCAAGAGCATATAGAACTGAGGTCACTGATAACAAGGTTCACACCCATATAAGATGGTTGACCACAAAGAACCACTTGAATATAGGTACTTTGCCAAACTATTTCATAATATTATTATACGTTTCATAAAAGAAAGACATTAATGGTTCAATGATGCCTTCATTAATATGATTATTTCCTGAACTGGCAATGATTTTATGAAACTCTTTATCTAATTCATCATAATTGTCAACATTATTTCTCATCGCATCTATCGACTTTTTTAAACTTTTCAGTTCAGTTTTTGTTATTTTTTCTGCTGCTAATGTGACAAATCCGAGTTCCTGTGCCATTCGTGTTTCCATTAGAATATTTATATCCGTTGCAGTAATAGCATCAAATGATATGGGCGCGTACCTATTTTATGAGATATAAAGGTCCCTTCTTTTGTTCTTCTTTCAATCACTCCTAATGTTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 14829-13800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLU01000143.1 Caldibacillus thermoamylovorans strain B4167 NODE_345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 14828 30 100.0 35 .............................. GAATATCTTGAAAAAGAGGAAGCTACTCTATCATT 14763 30 100.0 37 .............................. CATAAGCGCAATAGCGCAAATAAAGCACGGAAAGGAG 14696 30 100.0 36 .............................. ACGCGTTTGTGAACATCGTTCACGCCGCACTTTTGC 14630 30 100.0 36 .............................. AGAAAAAGTTCCTACCGATACAGAATCAATACCACT 14564 30 100.0 38 .............................. TTCATTGTCATGTTCATCATATCCATAGACTTGACCAC 14496 30 100.0 36 .............................. TTTTCCGCGTTGCATTGCCACCGTTATGCCCTAGCG 14430 30 100.0 38 .............................. ATTCGGCGTAACTTTCGCGCCGGTCAAAAACGCAATCT 14362 30 100.0 36 .............................. TACTCTTCACGCCCTAAAGCGTCATTGCTATAGATT 14296 30 100.0 36 .............................. TAACAATTTAATTTGGATATTTCTATCTGTATTTTT 14230 30 100.0 37 .............................. TCTCTATGTCGTGCTCTATCTCTACCGTTCCGCTACC 14163 30 100.0 38 .............................. CCGAAATGATAAGCACTAGTTACCATGCCTGCTGTTTT 14095 30 100.0 37 .............................. AAATCCGCGGAAAAATCGTAGAATTATACAGGATGAG 14028 30 100.0 37 .............................. TATTGACGGTCAATACTCTTGGAAAGACAAAAGATAT 13961 30 100.0 35 .............................. TCAGTTGCAATACTCCAATCTGTATCTGATTTGTA 13896 30 100.0 37 .............................. AATCCAATTCATATCCTAAGTTTCCAGCCATGGCTAC 13829 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : TTCTCGGTTTTGTTGACTCTTCTGTCCTATTGGTGGTAATGATTGCTGGTTCACCTAATAATTTACCCTATTATTTGAAAGTTTTTATTGGATGTCAGGATGATAGAAGCCTTTTGCATTCATCAGGTGAAAAAAGTTGGATCTCCTGTTGCCCCATCAATAATGACGAGATTAGTATTTGGGATTTTTTTAAAACGTGTATGGAATTTACGAGATATTTCTCTGTTTTTGCGGAATGGACCAGTTCTTTCATTGAGAAAAACATCAGGTTGTATTCTTGACAAAATGTAATTGGACTAGTGGAAAATTTTTGTCGTCGACCTCCAGTAGCGTACAAACCCCGGGGGATCGACGACAAGTTATTTTGTAAAATAACCAATAGAAAATCCCTAGATTACGTGCATTTATGGAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAAACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : TGATCGCTTTTCATTGTTATATTCATCACTCCTTGTTTAAAGCCGGAACAGCAAAGCCATTATCCCCACGAAGAAACAAGGTCGTTTCCGGGAATATTTTGTTATAATGTTCAATTAAAGGTTGAATAAACTCCACCACACCATTCGATGTATAGACATTTCCCGGACGGAGCTGTGCCAAAGTCACCAGTCGCCCCATCAAAAGCGACCAATGGATGAAAACCCATCGTCCTGTAATGGGTATTATATGACGAGGATTCTTGATCCCCATACGTATCTGAATGAGTGGAATCTAAGTTAATAAATAACGACTTTGATTGTCGAGCAAGATGAATTTTATCAAGCAATTCTTGGTTCGCTTGATTTAAATATTCGATTGAATGTTTATCAAATCGGGTATAAAAGCGAGACAGACTAGGCTGGGAAGCGAGTGCTGGCGTTCCAACGATTTTCTTAAATACAGGGTCGTGAGTCAACTGTTCAGCAGTATCATCTTTTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //