Array 1 110607-109713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJK010000143.1 Pasteurella multocida strain Clemson Contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 110606 36 100.0 30 .................................... TCGCTTACAGACGAGTGAGAACGGCGACGT 110540 36 100.0 30 .................................... CCTCGATATATGGATAACCAAGTATCGCAA 110474 36 100.0 30 .................................... AATAACGAATTTTGGTGGAGATCTCCGTGT 110408 36 100.0 30 .................................... TTCTAGCTTTGAAAAATCACTAATTCCCCA 110342 36 100.0 30 .................................... GCGAAGTTGGTTACAAAGTTAATGAACACT 110276 36 100.0 30 .................................... TAGCATTGCTCAAACTCACTCTGATCCATG 110210 36 100.0 30 .................................... GGTTGATGGCGGGGATTATCGCATTTTGCA 110144 36 100.0 30 .................................... ACAATTTGGTGCAATTCGTAGTGCAATTTT 110078 36 100.0 30 .................................... TATTTAAAAAATTACTTCATTGCCGCAGTT 110012 36 100.0 30 .................................... AAATGGTTATTTGAAACTGTTGAAGAATTA 109946 36 100.0 30 .................................... CTCTCGCATTGGCATATTTTGTTTTTTACA 109880 36 100.0 30 .................................... TCAATCAACGGTATTCCATTGCGTTTCTTG 109814 36 100.0 30 .................................... AATGCAACAGAACCTAAAACAGTAGCTTTA 109748 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TTTTTATTTAGTAAATACCATTTGCCATAGCTTATTAAACGAGGACCAATCAAGCGCTAATCTAAATCAGTCACTTAACTGCTCCAGTTTTTTATTCAAAATTGCGACAAGATCTGGTGGATCATCAGGAATAACGCATTGTCCAGATGATGATTCTTCGTTTGACTGCTGACTTTTTGAACCAATCACCTCTTTAAACTCCGCAGACAGTGTAAAAAAACCCGTTTTGTGAGATGTACCCCATTCTTCACACTTAAAATGTCCTTGCTGTGTTGAATTGTATGGTGTCCAAAGAAAAGATTTTACTGCGCCATGATCGTTGAGAAATTTATCAATCTCATTAATTAATTCCTCACTCCCAGAAAAAGAAACTGAATAAACACGAAGGTTATTATTTATTCCCTGTGGGATTCGCTGTTCATAGCCGTCGCCAAATCTAATCGTATTTACGTTTGGCTTTTTTTTCATTTCCATGCCCCATTGCGGCGCATATTCAAACA # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 16669-18677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJK010000145.1 Pasteurella multocida strain Clemson Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16669 28 100.0 32 ............................ ATAAAATAGATAGTAAAACTGAGTAATGCATA 16729 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 16789 28 100.0 32 ............................ GCAACGGAAATTGAGCGTGGCATGATAAACGC 16849 28 100.0 32 ............................ TTGTCGAGATTGTGCCAGTACGCCCGCACTGC 16909 28 100.0 32 ............................ GCAAGATGCGGGGCAAACTCTTTTAGAAATGA 16969 28 100.0 32 ............................ CGCTTTTGCTGTCAACGCAAGCGTTGAATTAT 17029 28 100.0 32 ............................ ATTAGCGGGGCGTGGGGCAAATGGAAGCTTGT 17089 28 100.0 32 ............................ TATCATGCCAAAATCAAAAAGCGAACTAATAA 17149 28 100.0 32 ............................ AGTGTGTTGCTTCGATTTCATCAAAGACAATT 17209 28 100.0 32 ............................ GAAAGAAGTCACTAACCCGCAAGGATTTTTAA 17269 28 100.0 32 ............................ TGTAATGTGAATATTTGCCCTCTTATGAGGGC 17329 28 100.0 32 ............................ TGTCGGCAATAGCGTTTGATTAGTAGTCATCT 17389 28 100.0 32 ............................ ACATCGGTGCGGTGCAATACGAAGATGTGAAG 17449 28 100.0 32 ............................ AAAATGTGGTTCTTCTAATTTGAAAGTTCGCA 17509 28 100.0 32 ............................ ACGTTCCGCTTTCTTCATCCTGATCGTAGTCA 17569 28 100.0 32 ............................ AATCACATTTGGTTCAATGCAATCAATGTGGA 17629 28 100.0 32 ............................ CTTGAACTCCCGGTGGACCAGATGGACCGGGT 17689 28 100.0 32 ............................ TTGCATTGCGGCAGCAGAAACCGCGGCAAATG 17749 28 100.0 32 ............................ TTTTGCATCTTGTACTTGTACACCTAGCTTTT 17809 28 100.0 32 ............................ AATCACGCGCAATCTTGAACAGAACGCGAAGT 17869 28 100.0 32 ............................ TAAAGCGATCTTAGCTCGATTATCAGATTGGT 17929 28 100.0 32 ............................ ATTGGGTTATCTCAAGTGAGGAGGTAGTCGAT 17989 28 100.0 33 ............................ TTGATTTCAAAATTTAATAAGAGGTTTTTTATG 18050 28 100.0 32 ............................ TCATCTTTTGCATTGAACGCTGTCGCGCCGAT 18110 28 100.0 32 ............................ CTCTTGTTGCTCCTCTTGTGTATAAACTTCTA 18170 28 100.0 32 ............................ CTGTGGCAGTACTACGAATGGAGATATTAATG 18230 28 100.0 32 ............................ AACGAATAACTGCACGTAGATGATTAGCGTCT 18290 28 100.0 32 ............................ TCCATAAAAAAGCCCGCATTTTACGGGCTATT 18350 28 100.0 32 ............................ TCCGTGAGAGATTGAAACCGTCATTACTCCCC 18410 28 100.0 32 ............................ AAATGCGGCGGGTCAAAAATGACTAGTTTGAA 18470 28 100.0 32 ............................ AGTTGCGGCAGCAATGGAGTTGATCAGTCAGG 18530 28 100.0 32 ............................ ACATTTTGAGCTAGTCCCGCTTAACCCTCTCT 18590 28 100.0 32 ............................ ACTTACCCCATTGAAATTTCCCTTTGAATTTA 18650 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 107670-113521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJK010000099.1 Pasteurella multocida strain Clemson Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107670 28 100.0 32 ............................ ACCAGCTAAAGCAGGATTTGGTGTCGCAATGC 107730 28 100.0 32 ............................ ACATTTCAGTTTGTTGAATTGCAAGAAGTTGC 107790 28 100.0 32 ............................ CTTAAAAATAAAGGTTAAAAAATGGCAAAACA 107850 28 100.0 32 ............................ CGGTTTGTTTATCACTGCAGTCATTGCGGGCG 107910 28 100.0 33 ............................ GTGATGTTGTGTGTCACGCTTGTGATAATCCAT 107971 28 100.0 32 ............................ ATTAGCGGGGCGTGGGGCAAATGGAAGCTTGT 108031 28 100.0 32 ............................ TTTAATTAAAACATTTCCGCCCACTTCGAGAT 108091 28 100.0 32 ............................ TTTAGATCAGACAGACACACGTCAAATCGAAA 108151 28 100.0 32 ............................ AATGCTGAAAATCATTGCGCAAACTCGTGGTG 108211 28 100.0 32 ............................ ACTTGCGATTACGTCTGCTTCTGATTCGATGT 108271 28 100.0 32 ............................ CTGACATGCTTGACGAATTCGGCGAGGTTGTT 108331 28 100.0 32 ............................ AGATGTCATCTTTCACAAATATCACACTACGC 108391 28 100.0 32 ............................ TGTGAGTGAAACTCCACTTGCGATTACGTCTT 108451 28 100.0 32 ............................ GCAGTGATAAACAAACCGAGCGGATTCATCAT 108511 28 100.0 32 ............................ CAGGAGAATCGAACTTTAATACTTTTGCTGAT 108571 28 100.0 32 ............................ TTGCTCGTTCTTCGCACGAATCTCCGCAACAT 108631 28 100.0 32 ............................ AGAATGTGGCACTAAAACGCCAGAGCTTGCTA 108691 28 100.0 33 ............................ ACGACCTAACTCTTTTTCGTTCATTGTTTCCAA 108752 28 100.0 32 ............................ TTTTTTTGTAGGCGTAATCTCTTTAATATATC 108812 28 100.0 32 ............................ ACGCTTTCCAGCGGTAGTGGAAAAATTCAAGT 108872 28 100.0 32 ............................ GAATTTGACTCGCTCTGATGTCGGGAGTACAT 108932 28 100.0 32 ............................ TCTGGGAAACCCGCAGATGAACTTAAATGAAA 108992 28 100.0 32 ............................ GGTGAAGCGACAGCATGCACACCCGCGTTATT 109052 28 100.0 32 ............................ AAGAAGCGATTGCAACAGAGCGTTTAGCAGCA 109112 28 100.0 32 ............................ AGATGCTGATATTCTTATCTTGAAAAGAAAAA 109172 28 100.0 33 ............................ ATCCAACGTAATGGAGTTAAAATTTTAGGGTAT 109233 28 100.0 32 ............................ ATATACTGTCGATACTCGCCATTGGATAGGGT 109293 28 100.0 32 ............................ ATGAGCAAATCAGTATTTAATAATTTATTTAA 109353 28 100.0 32 ............................ GCAGTTGCGCCGCTTGCATCTTCAATTTGTTC 109413 28 100.0 33 ............................ CATAATTTAAGGATAAATTATGGCAAAACAATT 109474 28 100.0 32 ............................ AAGAAAGAGCCGTTTTTTCAACGTTCGCCAAT 109534 28 100.0 32 ............................ AATCTGGCTATGGTGACTGGATTCGAACCAGT 109594 28 100.0 32 ............................ AAGAACAACACCATAAACTGCATTATGCTCCT 109654 28 100.0 32 ............................ TTCTGCTGCTAAAGAACGTAATGACCAGCCTT 109714 28 100.0 32 ............................ CAGCCATTTATTCACCTCTTTGATTAATTTTT 109774 28 100.0 32 ............................ GTATGGTGACGCATTTAATTGTGACAATATTC 109834 28 100.0 32 ............................ CATTTTCTCAATCACATACATCACATAAACAA 109894 28 100.0 32 ............................ TGAAAAAACAATATCTCCAGCAATAGCAATCC 109954 28 100.0 32 ............................ CGTGAAATTGAAATCAACGGAAACAGCCATCT 110014 28 100.0 32 ............................ ATTCAAGAGCATCATTGCAACTAACAAAAAGT 110074 28 100.0 32 ............................ GCACAGCAAATAAAACGTTTGAGCTTTCATAT 110134 28 100.0 32 ............................ ATTATTTAAAAACTTCCTTTTTTTGTATTTTT 110194 28 100.0 32 ............................ GTCTTCTGTTTCTTGTGTTTTTAGAGCAATCA 110254 28 100.0 32 ............................ TCGTAAGAAGCACAACAGAAATGCGGTGTTTC 110314 28 100.0 32 ............................ CAAGGCTTAACTTCAACTGTTGAACGATTAAA 110374 28 100.0 32 ............................ TTACAAAAATTCTCAAAATACAACTTGTAGAG 110434 28 100.0 32 ............................ CTCTACGCTTAAAACATAATCAGACATACTAA 110494 28 100.0 32 ............................ TCACCACGCTGAATATGCTATTAAATTTGTAG 110554 28 100.0 32 ............................ GCAGTCTTGACATCGTTATCTGCGTTTAAATT 110614 28 100.0 32 ............................ GCAATTGTGTGGATGTTGCGTTCAAGGAATGC 110674 28 100.0 32 ............................ TAATTATGTTTTTGTCGTTGAACGAAAGCATT 110734 28 100.0 32 ............................ AAGAAATGAAACTTGCGCGATTGATATTTCGT 110794 28 100.0 32 ............................ ACATCCGATTTTAGCAAATATTAAAGTCGTAT 110854 28 100.0 32 ............................ TGTGAGCGTCTATCTATTAATTAAGTACATTA 110914 28 100.0 32 ............................ GGCTGGGTCAATTCTATTCCACACATTGAAAA 110974 28 100.0 32 ............................ GCTTAGTTATATGGGAACAGGTGGGCAGAACA 111034 28 100.0 32 ............................ ACTGACAATAGCCAACTCCAATCGAAAATTTT 111094 28 100.0 32 ............................ AATAATGCGAAATTACGCGTTTTAGGGCTTAA 111154 28 100.0 32 ............................ ATTTCAATTTACTGTCACTGAATTTTTCTCTA 111214 28 100.0 32 ............................ ATACAGGGTCGCCCTATTTGACCGTTTGGCTT 111274 28 100.0 32 ............................ GAGTGCGTATGTGATTTATAACGGTGATGTCA 111334 28 100.0 32 ............................ TGAAAAAGTCATTGAAGATGCTTTTAATACAA 111394 28 100.0 32 ............................ ACAGGAATGAGTGGGAAGCTCCCGCTGAGTGA 111454 28 100.0 32 ............................ TCTTGAATATGTTCTAGCTTTGAAAAATCACT 111514 28 100.0 32 ............................ TAAATGGGGCGATCACGTTGCGAATTATCAGT 111574 28 100.0 32 ............................ CATTCCGATGCACTCTTTATCCCACACAATCG 111634 28 100.0 33 ............................ CTTTATCATCAACAAGAAGAACATAAGAAACCC 111695 28 100.0 32 ............................ GAAATGCAGAGAGTGTGAAGGTGGTGGGCAAG 111755 28 100.0 32 ............................ TTCGCCCTCGGGGCGCCCATCTTGTGGATAGA 111815 28 100.0 32 ............................ GGCAAGTAAAATTTCTTTAAATTCCGGTACAG 111875 28 100.0 32 ............................ TGCTTTACCTAAGCTTGGGTCAAGTGCGCCGA 111935 28 100.0 32 ............................ TACAAGACAGCAGAAGATGTCTTGGCGTTGTT 111995 28 100.0 32 ............................ TATGGCAGATTTAGAAATTTTTAGATGGGAGT 112055 28 100.0 32 ............................ AATGAGTTACGTCATTAAAAATAATCTCACCA 112115 28 100.0 32 ............................ AACAACGGTGTCGCTTGGATCAGTAAACACAA 112175 28 100.0 32 ............................ TGATAAAGTATTATTGATTCAATCTATTCATA 112235 28 100.0 32 ............................ CATTCGACATTTTCCCAGCCAGCAACACGCAC 112295 28 100.0 32 ............................ TCAAAATATCCCGCATAAATAAAACGTTTCTG 112355 28 100.0 32 ............................ ATTTGCGACATACAAATCTGGGTATGTTACTC 112415 28 100.0 32 ............................ AAGAATCACACTAAACACGCCTCCGCGTTTAG 112475 28 100.0 32 ............................ AACTTCACGTCCTGTCTCAACCGTGCCGTCAG 112535 28 100.0 32 ............................ TGATGTGACGGGAATGTACACGCGACCAATGC 112595 28 100.0 32 ............................ ACCGTAACTGGACTACTTTTACGACGTCGTCT 112655 28 100.0 32 ............................ TGCACAAGTCATTGCAGTTGTAGCAAAACGTT 112715 28 100.0 32 ............................ TTTTGAGCACAATAATCAAAAACTCTTTTGTA 112775 28 100.0 32 ............................ GAGAGTGTTAATTACTTGGTGATTTTCACGAC 112835 28 100.0 32 ............................ TCTTTTTTATTCTCACCAAAACTAGCAACCTG 112895 28 100.0 32 ............................ TTGCCCGCATTCGCTAATTATTCACGGTAAAG 112955 28 100.0 32 ............................ GGTCGTAGCAGAATACGCGGGGACAGCTTACA 113015 28 100.0 32 ............................ TGTTAATCTACAATCAGTTGTAAAATTATTTT 113075 28 100.0 32 ............................ GACATTAATGTCGGAGACATCATTTAACAGAT 113135 28 100.0 32 ............................ TCACCAGAACCGCTACCAGAGCCTGAACCGCT 113195 28 100.0 32 ............................ ACAGTTCACGCACGCGAATGTTACACAACCGC 113255 28 100.0 32 ............................ GACAGGCACAATGCACGCATTTTTAGCACAAA 113315 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 113375 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 113435 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 113495 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 98 28 99.9 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCACCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //