Array 1 247704-247377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAN01000001.1 Pectobacterium odoriferum strain T4 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 247703 28 100.0 32 ............................ TTCCGCGCAACAAAGTGGCTCAACTAAAGGCC 247643 28 100.0 32 ............................ TGTTCACGTGATAAGTTTTCAGTAGATGAAGT 247583 28 100.0 32 ............................ AACATCGATGATCTGCCGGACATGCCGGAGAT 247523 28 100.0 32 ............................ GAAGTGTCGAAATGGTTACGAGCGAATCTGGA 247463 28 96.4 32 ...........T................ TGGCACTGGTCCATAGGCGCTGGAGAAGATGA 247403 27 75.0 0 ...........T.C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTAATCCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAAGTGATATTTCCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 256281-257328 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAN01000001.1 Pectobacterium odoriferum strain T4 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 256281 28 100.0 32 ............................ GACTTCTGCCAGAGCGCCGCACATGGTATTAA 256341 28 100.0 32 ............................ AAGATGGACGATCTGGAATTTAATGACCTCTA 256401 28 100.0 32 ............................ GTTCTGGCACGGCGACGGTATCAAAATCTACA 256461 28 100.0 32 ............................ AACATTATATGCAAATGAAACTAACGCATCAA 256521 28 100.0 32 ............................ AGCCGCCGCCGTTGCAGTTGCTGGCAAATCAG 256581 28 100.0 32 ............................ TTATCAATGCGTTGCTGTGCCTCTTTTTCATT 256641 28 100.0 32 ............................ GGGTCGCGGTAAATAATGTTTAGCGCAGATGC 256701 28 100.0 32 ............................ CGCAATCAGGATGACGCGCTTAAAATGGTCGC 256761 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 256821 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 256881 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 256941 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 257001 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 257061 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 257121 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 257181 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 257241 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 257301 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGTTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAAAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 265732-266719 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAN01000001.1 Pectobacterium odoriferum strain T4 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 265732 28 100.0 32 ............................ GCCACCGAAGATACCTCCGTTTCGATTCCCCA 265792 28 100.0 32 ............................ AATTGGATCAGAAGATGGAGTGTTAACAGCAT 265852 28 100.0 32 ............................ AGTCAATGGATCCTAACCCGGAATGCCCCCGA 265912 28 100.0 32 ............................ TCTGGCTGGAGCGGCATAAATGAAATCGTATC 265972 28 100.0 32 ............................ GCATAGGCCAGTTCCGCAGGTGTTGGCCCACC 266032 28 100.0 32 ............................ AGATGCGTCGGTTAGCTCTATTCTAATATCTG 266092 28 100.0 32 ............................ ACCACCTGCCGACTGACGTATGGGCAGGCTGT 266152 28 100.0 32 ............................ AAACATCAGGGTGCCGCATGAACATCATCCCA 266212 28 100.0 32 ............................ TTCTCCAGTTCCTCTTCCGTCTGGTCTTTCGC 266272 28 100.0 32 ............................ CCGAGCAATCGTTACGCTCGTCTGTTCGCAAA 266332 28 100.0 32 ............................ AAGATGACGTGTTGAAAATGTGGTGGGAGATC 266392 28 100.0 32 ............................ ATTACGTTCGCAAAATTACCCTCCCCCATCGC 266452 28 100.0 32 ............................ ATTAACAACGTCAGAGATCATCTGCTCAATGT 266512 28 100.0 32 ............................ TGACAGGCTTCGGCGAGGGTTCCCGCGTTCGT 266572 28 100.0 32 ............................ TGGTTGATTCCAATTAATTCCAGACTCACCGC 266632 28 100.0 32 ............................ AAATGCATTAATGCAGCACTAATCCCAACCCA 266692 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACAGTAAAATATGAACG # Right flank : AGACATGGCAACACTGAAAAGCGAACATGCGCAGTTCACTGCCTACACGGCAGTGAACCCCTCACTCCACAATAATCCGCTCGTCATTGTCTCCCAGACAGATACTTAACTGTTGACCGTCAGGGCTAAAGGCGCAGTAGGGGAGAGGTTCACGCAGGTAGAGATGCAGCGGGAGCGCGAAATAAAGCGCAACTAGCAGCAATGCCGCGACCGCTTTCGTATAGGTTGGACGTGGAGCGACTGGGTTGCGCCGAGCGTGTCGATATTTCACGATGCCGATGGCGGCCATGCCTGCGCCCACCAGCATGGAAACATACAGTTCGCCGGGCATGGGGGAAAGTATCAGCTCTTCGCTTTCATAATCCTGCCAATATTGAATGCGCCACAGGGCGCTGATACCGATTTGCACCAGCCCCGCGAGTATCCAGGCAACACGCCATCCCGAGAGCCGAAAGAGCGCCAGAAAGCAGAATCCCGACGCGGCGCAAGACCAATAGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //