Array 1 30025-29856 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJC01000031.1 Desulfovibrio sp. An276 An276_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 30024 33 100.0 32 ................................. GACGTACCTGTGACTCATACGCCTGCATTGCA 29959 33 97.0 38 ................................A TACGAGGAAGACTGGGAAGACCTCGACCCCTTCTCCGG 29888 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ====================================== ================== 3 33 98.0 36 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Left flank : CTCTGCGGCCTCATGAACATGCGCTAGGGGCAAATGCTGGTAGACTGCGAGCCCCTTACGGACAGCCGCAGGGCTGCCTACATCCAGCGCGTGGGCTATGTCTCCCAGTCCTCCTACATCTTCAACGGACCCGTTGCCGAAAACGTGGCTTTCAGCCAGTGGGGCAAGCCCTACGATGAGGAGCGCGTGCTTCTGCCCGAGTACACGGCATCGCTGATCTCGAAGGAGTTCACGGAACAGCAGGGAAACAGGCTGGGTACAACATGTTGCCCCTCGGGCACGATTTGTATTAGCAACTAAAACATGACCGTCCAGGCAGGATCGACAACCCGAGTCGGGCGGCTTTTCCCCGGGAGGTTCTCGAACAATATAACTAATTGCAATATCTTTCTTTTTTGTGCATACTCCATCAGGAATGGTTTTTGAGAGATGACCTTTTGGGACAGTTCTCGAAAACACCCAAATAACTATTTGATTTTCCCTGATAAATCACCAGGACA # Right flank : TCAACAAACAAAAAAAGGTGGTCCTTGCAGTACTTGCAAAGACCACCCATTATTTTCTTTTGGCTCCCCAAGACGGACTTGAACCGCCAACCTAGTGATTAACAGTCACCCGCTCTGCCGATTGAGCTATTGGGGAACGTGACAACGAAAGGGGTTATACGCATGGACCCCAAGTCTGTCAACAAAAAATTTCAAATTTGACGAAAAAAAGTCAAGGAACAAAAGAGGTGGTCCTTGCTATGCTTGCAAAGACCACCTGTTATTTTCATTTGGCTCCCCAAGACGGACTTGAACCGCCAACCTAGTGATTAACAGTCACCCGCTCTGCCGATTGAGCTATTGGGGAATGCGACAACAAAAAAGACTAACGCATGACCGTCAGGTCTGTCAATAAAAAATCAGATTTTTTTCTGGCAGACTCATTGGATCGGCCAGTAGAGGCACTTTCCAGGAGATTTTCCATGCCTGTGGACTCTGCCCAAAATGCTAGAGTGAAGGAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 70387-67271 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJC01000008.1 Desulfovibrio sp. An276 An276_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================================ ================== 70386 35 100.0 45 ................................... TTCTGGGGGTCGATGCGGGCGATCTCTTGCCCGTACTGATTGACA 70306 35 100.0 41 ................................... AGTAAATCAGTATTGCTACATTGTGCCATAAGGATTTCAAC 70230 35 100.0 42 ................................... TTCCTTTTCAAGACGGATTGTAAGAAGTTCCGTCTTGTGCGA 70153 35 100.0 43 ................................... GTGTGCGTTGCGCGGGCGCTTAACGACAAGGATCGACTGGTCC 70075 35 100.0 42 ................................... TCATGTCTAGTTCTCCTCTGCTATTTCATCAAGCAGCTCTGT 69998 35 100.0 43 ................................... ACAGATCCCAACCTGTACACTTTGCAGCGGGGCAAGGAATAAG 69920 35 100.0 41 ................................... ACAGCGTTTCCGGAGGTTGTGACTACAACGGCAATACAGAA 69844 35 100.0 41 ................................... ATATCTGGACCACGAGGTCGGGCATGTAAAGTTCACCGACT 69768 35 100.0 42 ................................... CAAGTTCCCTTTGTGCTATCAATTGTGTAACGACTAGATCCC 69691 35 100.0 43 ................................... ATGTACGTCCACACAGTGAACGTACCAACAAACTTCTTTGCAC 69613 35 100.0 36 ................................... GGGCCACACGGTGCATAGGCATGCCGTGTATTCGTT 69542 35 97.1 44 ..............A.................... ATTGGATGCATTGATTGCCCTCCTCAAGTTCATGGCAAAAGTTT 69463 35 100.0 44 ................................... TTCAATGGACTTCACGCCGTCCTTTGTGCGGACGGTCTTCTTGG 69384 35 100.0 41 ................................... AAGCGGTCTTTGTCATGGTATTGGTCCTTTTGGGAGTCCTC 69308 35 100.0 44 ................................... CGTTTTCAGTTTCAACAGTCAGAACTTCAAGGTCGGAAAAGTTA 69229 35 100.0 37 ................................... CTTAATGTTCGGAGTGAACGAAAATTCTATAGTCTTT 69157 35 100.0 44 ................................... CGGACCACATTCTGAGGTCCTTTTGAGACACGGCGCGGCGGATT 69078 35 100.0 37 ................................... GCAAAGCTCCACAATGTGATCCCGTCCATGGTTTCAG 69006 35 100.0 43 ................................... TGTTTCCGTCTACAGTCTTGACAGAAACCTTAAAGAAGGACTT 68928 35 100.0 38 ................................... GTGCTTTGGGTGCTGTCTCCATGCAAAAGGTTGGGAGC 68855 35 100.0 39 ................................... CAAGTAGAGGCGACTGCACAGACACGATCCAGCCAAGTT 68781 35 100.0 40 ................................... TGCCTTCACATGGGAAGATCTGCCTTGACGGTATCGGCAC 68706 35 100.0 40 ................................... GCCAGACGGCTGGCATGGGTTACGGGAAACTCGGCAAGCT 68631 35 100.0 43 ................................... TCGTTAATTCTTTCGTCCATAGTTTCCTCCTTATAGTGGGTTG 68553 35 100.0 40 ................................... CCATCTCGGCACCGCACTCCGGACAGAATCCTGTGAACTC 68478 35 100.0 41 ................................... CTGGTAGCCCTCACGAAGAAGTTCACTGATGTCGCTTGTCA 68402 35 100.0 42 ................................... ACTTCAATCCAATTAGGATCGGGGGTGTTCCGCCAATTGATG 68325 35 100.0 44 ................................... CAGACAGACCGGAGTCGGCAAGCTGATCCAGAATCCGCTTCTTG 68246 35 100.0 40 ................................... TCTCTTCGCTTTCGAGCATAATCTTCATCTGTGCCATGGT 68171 35 100.0 43 ................................... CTTCTTGCCAATTTCTCCACAAGAAGAGATACGGGAATAGAAC 68093 35 100.0 48 ................................... CCCTGCCCCCCTATGGGGCATTTTAACAAATTTTACAGTTCCTTTTTA 68010 35 100.0 40 ................................... AGGACTTGTGCCTTGACGTCCTTGCCCAACTTGTCCAATT 67935 35 100.0 42 ................................... GGCCTTGATAGGTGTGTTGAAGAGAACGTGGCCGTAGTCCGC 67858 35 100.0 44 ................................... GCTGCACAATCTGCGGCGCATAGGCTCCGTCGCCAAGATAGCGA 67779 35 97.1 41 ...........T....................... TACAGCACATGACCAATCTCATGGTCCAGGTATCCACGCAG 67703 35 94.3 44 .....A...........A................. CGGCTCCAGAGGCTGGCACGCTCCTCATCGTCTCCACGCTCACG 67624 35 94.3 42 .....A...........A................. ATGTACCGTATGGCCTTGCCCACGGTGCCGTCCTTCTTCACA 67547 35 94.3 41 .....A...........A................. CATGCTTCATAGCGCAGATTGATCACCTCAAAGAGCATCAG 67471 34 82.9 38 .....A........A..A.-A..T........... GCTAGGAACTCGGCAGGACCTTCGGTGTGTATGCCGTC 67399 35 97.1 60 .....A............................. AAAATAGAAATATCAAGAGCTAAAAGTATGTATATTACACAAACTAGCATATCTAGTATG 67304 34 80.0 0 ....A....T........T...A.T.T.....-.. | ========== ====== ====== ====== =================================== ============================================================ ================== 41 35 98.5 42 CTTTGTATTGACCTGAATCTCATAGGGATTACGAC # Left flank : GGCTAGGGAGGAAGAAGAGAGGAAGGCAGAACTTGCAAGTCGCATGGCCGAGCTTTCACCCGAAGAAGCAAGGCTCTTGCAACTTCAGGAAAGCCAGGATGAGGCTCTTTCCATGCAGCTCTACACAGAAATGCAGGGATGGCAGCCTGACATGAAGGCAAAGGCAGCTGAGGCCCTCAAAAATTGCTGGTCTCATCTTGGCAAATGGGATGGCAAGCAATCCAAGAAGCAGCAGGAGAAGATCAAGCAGGTCAAGGCCCTGCTCCCAGGATGACAGATGCGCGAACCTTTTCGCGAAAAATCTCGTTTTTGTGATCATCTGTGATTTCAATAGGTTGCAAATTTAAACTCGAAAAGGTTCGCGCAAGGGAAAATTGCTATGAATACAACAAGTTACAATTTTGAAGATCAATTGTTCCACTGGACTGGAATGAGTTGGCAGGAGGTTCGCGAAAACAAGCTACTAACTTCAGAGTATCTTTTGCAAATTTGACTGTAGA # Right flank : AAAATAGTCTTTTAACTTAAAAATTACAGAGAGAAATCCATGGTAGTATATATCACGTCACAAGGCGCTAGAATAGAAAAAGAAGGACGCCGTCTGATTGTTCACGGCAAGGATTTCAAACAAACACTCTTTGCAAGTCATCTTGAGCAGATTGTCCTATTCGGCAACGTCTCCATCACGGCACCAGCCATGCACGTTCTTTTCTGGAAGGATATAGACACAGTATTTCTCCGAAAGGACGGCAGTTATGTTGGCAGGCTTGCCATGCAGGAGCCGGCCAATGCGACATTGCGCAAAAGGCAGTTTGCACTTTGCGATGATCTGGACTTCCGCCTCAGGCTTGGACGCAGCGTTGTTCTCGCCAAGATTCTCAACCAGGCCACTGTTCTTGCGCGCATCAAGAGAGCCAGAAACAAGCCTCAGGCACTTGTGGCCGCAAACAATATTCGCGAGCTTGCCCGCGGCCTTGAGCGCGCCACCACCTGTGACGCCCTGCGCGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGTATTGACCTGAATCTCATAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8602-9339 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJC01000056.1 Desulfovibrio sp. An276 An276_contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 8602 30 100.0 39 .............................. GGCTTGCGCTGGTCCGACGTGGACTTGGAGAACGGTGTG 8671 30 100.0 40 .............................. GAGTTAATGCTCAATCACACCCCGTTGGACTGTTCGTGTG 8741 30 100.0 42 .............................. GGAGCCTGAGCTCGGGCCGCTCGGATATCGCGCAAAGGTGTG 8813 30 100.0 41 .............................. GACAAAGGTCATGGGCTAGGACATAGTCCACAACCGGTGTA 8884 30 93.3 41 ........A.G................... GGACTTTGAAGATGAAACAGCCCGACTTGCCAGAGAGTGTA 8955 30 90.0 41 ........A.G..T................ CAAGTATGGCCTTGCGCCCCAGTATGACGTTGCAGCGTGTA 9026 30 100.0 41 .............................. GTCCTGCGTGGTGACGTATGCTCAACCCACGGGAAGGTGTA 9097 30 93.3 41 .........AG................... GAGCAGGGGCGCGGTCAATGAGTATCTGGGCAAGCGGTGTA 9168 30 93.3 42 ...T............A............. CATGGCCGACGGCAAGCTTGTGGCCGAGGACCTCTTGTTGCA 9240 30 90.0 40 ..TT............A............. CAGGAGATGGTTGACGGCCAGCACAGTCTTGCCAAGTGTA 9310 30 93.3 0 .........AG................... | ========== ====== ====== ====== ============================== ========================================== ================== 11 30 95.7 41 TCCCGGGAGTAATCCCGGGCTCCATTGAAG # Left flank : CGAGCAGACGTTCGGTCCACTGGCGCACAAAGCCTTGCTGTCTGCTCCACAAGGACGCGCATGGGCAGGCACCAGACAAGCCTTCTGGGCGTTTGCGCGTCCAGATGGCGTCGCTTGTACAGCCAGGCCATGACGATGGCTGCGGTCTTGCCAAGGCCTGTGGGTATCTCCAGCACGTCAGGCCAGGCTAAGTCGGCCAGGCGCTGCTGATAGGGATAGGGGGGCACACCAAGAGCTGCCAAATACCAGTCTATGAGGGGCGGCATAAAACTCCTCTTGCTGAAGGACAGGGCTTTGCGGATCATGCTGTCGGCATTCGCGACAACCGGGATCTGGTGCAAAAATACCGTAGAGTCGTCGCAAGAACAACTATTTTGAATAAAAGGATTTTTTTGTGGGCGCTCCCCGGATGGGCAGTGCAAGGGATGCTTTTGGGGGAGGTTGTCGAAAATGGGCTTTACAACCCGCGTCAGGCCTTGGTAAAAACTGGTAGCGGTGTG # Right flank : GTGTGCATACTCTCGGCAGCAGACTGGCATCTGGGGCGAGCTCTCCGGCACCATGAAGCTTTACGTGTATTGGGCGCCCGCCCCGCATGGGGCAGGCGCCCCTCCTCTTATGCAAAAAGTTCAGTTGAAAGGTAGCGCTCGCCAGTGTCGCAGGCAAAGGTGACAATGGTCTTGCCAGCGTTCTCCTCGCGCCTTGCAACTTCCAGGGCTGCGCAGACGTTGCATCCGGTTGAGATGCCCGCGTTGACGCCTTCCGTGAGCAAAAGCGTCCTTGCCGTCTCTATGGCCTTTTGCGTGGGCACGGTGAGGATTTCGTCCATGAGCTCGGGTTTGAAGATGTCGGGTATGAAGCCAGCACCTATGCCCTGTATGCCGTGGGGCCCAGCCTTGCCGCCGGAGAGCACGCAGGATTCAAGAGGCTCAAGGGCTATGAGCTTTACCTCTGGCTTTTTCTCCTTCAGATAGCGCCCTGTGCCCATGATGGTGGAACCGGATCCCAC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCGGGAGTAATCCCGGGCTCCATTGAAG # Alternate repeat : TCCCGGGAGAGATCCCGGGCTCCATTGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //