Array 1 661207-660615 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE352613.1 Enterococcus faecalis VC1B-1 Scaffold156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================ ================== 661206 37 97.3 76 ....................................G GGATTTACAATAACTTCGCTACCATCTTCGTTTTAGAGTCATGTTGTTTAGAATGGTACCNNNNNNNNNNNNNNNN 661093 37 86.5 29 NNNN................................G CATTTTTGTAGTTCTTACTATTCTTGCTT 661027 37 100.0 29 ..................................... CGACCGTCCCATGTTGGAGCTCCAATCAA 660961 37 100.0 29 ..................................... TATGTGATTGAGGGAATTTTGATTGATGC 660895 37 97.3 29 ....................................C TTAAAGCGTTCCGAATAGCGTTCTAAGAA 660829 37 97.3 29 ....................................A TAAGGCTAAAGAATCTATCAAGAAAGTAA 660763 37 86.5 75 ................................NNNNN NNNNNNNNNNNNNNNGAGTCATGTTGTTTAGAATGGTACCAAAACCTTATTTAAAAGACGGCAATATTAAAAACA 660651 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================================================================ ================== 8 37 95.3 42 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATATCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGTTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.91, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 112287-110262 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE352626.1 Enterococcus faecalis VC1B-1 Scaffold283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 112286 37 97.3 29 ....................................C AGCGCCGGAAAAGTAGCAAGCCCCACAGT 112220 37 86.5 11 ................................NNNNN NNNNNNNNNNN Deletion [112173] 112172 37 86.5 31 NNNN................................A CTGCTCATTCGTTTTCTCCTCCTAACACGCT 112104 37 97.3 29 ....................................A CGTGCCTTCAAATCCAAAAAAGGTTTGTT 112038 37 97.3 29 ....................................A AACACTTCTTCTGCTAAAACAACATTTTC 111972 37 100.0 29 ..................................... GGCTTGTAATGCCTGAGTTACAGTCTTCT 111906 37 97.3 29 ....................................A GGGATTGTTGGGATTAGTGAAACATCTGT 111840 37 83.8 8 ...............................NNNNNN NNNNNNNN Deletion [111796] 111795 37 81.1 29 NNNNNN..............................A CCACTTGAACGGAATACTGGAACGTTTTC 111729 37 100.0 29 ..................................... GGACTTAACTTCTATAATGACCGGTTAAT 111663 37 100.0 29 ..................................... GGCTTGTAATGCCTGAGTTACAGTCTTCT 111597 37 97.3 29 ....................................A GTGACAGATGGTAAATCGTTGTTACTTGT 111531 37 100.0 29 ..................................... GTTCTGTAAGGCTGTAGATCGGCCGGACT 111465 37 97.3 29 ....................................A TTTCCTTTCGTAGTGATCACAAAATTTTC 111399 37 100.0 29 ..................................... AAGGGCAAAACTGAAAACGATACAACGAT 111333 37 97.3 29 ....................................A CCAGAAATAAAAGTTGACGTAAGTATTGA 111267 37 97.3 29 ....................................G CTAAAGGATTTTTGATGATGTTTTCTCGT 111201 37 86.5 11 ................................NNNNN NNNNNNNNNNN Deletion [111154] 111153 37 86.5 29 NNNN................................G GTGTCTATGTTTCGGAAGCCCCTTTCTTG 111087 37 100.0 29 ..................................... GATGAAAACCGATGGTATTTACTTTCACA 111021 37 97.3 29 ....................................A GGTACAATTTATGGATTGTCACATGTCAT 110955 37 100.0 29 ..................................... GTTTTAAATTCATACATAACGAAACATGT 110889 37 83.8 8 ...............................NNNNNN NNNNNNNN Deletion [110845] 110844 37 83.8 29 NNNNNN............................... AATATAGGCGCCTAATCGTTTATAATGAG 110778 37 97.3 29 ....................................A GGTACAATTTATGGATTGTCACATGTCAT 110712 37 100.0 29 ..................................... GATGAAAACCGATGGTATTTACTTTCACA 110646 37 97.3 29 ....................................C TCGTTAGAATGCCCTTCACAGCTGTTAAA 110580 37 100.0 29 ..................................... TATGCAGAAAAATTAGAGCAGCTGAAAAA 110514 37 97.3 29 ..................................T.. CTAATGAGCATTCATTACATATGTAGAAC 110448 35 81.1 114 ......................TT.--.CG......G ATATGATTGATGTAAAAATATCATTGATATGTATAAATATGGTTATTATATAAAAAATATAAGTAACGAATTAAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [110416] 110298 37 67.6 0 A...........C...A....TT.CTT...G..T.GA | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 31 37 93.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : GAGTACGATTAGTTAAATATTTAGTTTTACAGCTATGTTGTTATTATATGTGTTGAACGAAGTTATTGATTTTAAAAGTAGTTGTTCCTCCTTTTTTTATATGCTACAATTTTTCTATATTAATCATTAGTTAAATATTTAAGGAGGTGATTATAATAAGAAGGAAAGGATTTAACAAAATAAAAAAAGAAATGGAATATGTTAAAGTAGTTACGAATTTACTAATGGTATCAAAATTTTTTACGCTACAGTCCGATGAAGATTTACATACATTAACTCTGTTTGGAACATTACTTATTTAATATTTATAGACGCTTTGTAATGAATGCGCTTTCTACGAAACTGGATAATAAAAATTGGCATTTTTCAAATGCTACTTTATGTAGTTTACTTTTTTATAGTGGCTATGTATGTTCGCATTTATTTCTTTTGAATAAAAATCACTTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTT # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:-0.47, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [29-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //