Array 1 12447-11747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12446 29 100.0 32 ............................. GAAAGGTTTAAGGGCCGGTTGTGGGTTGATTC 12385 29 100.0 32 ............................. TCGGCTAGTTTCTGGTAGCCACTGCCTATGGC 12324 29 100.0 32 ............................. TCATTCAAACTGACTGCTCCTAACAGCAGAAC 12263 29 100.0 32 ............................. ATCATCAAGTCGCTCTGTGCCCGCAGGCAAGG 12202 29 100.0 32 ............................. TCAAATTCATCCCGCGTGGAGGTGCTCCAGCC 12141 29 100.0 32 ............................. CGTCACAATCACTGTGCCGCCGCTGATGGTGC 12080 29 100.0 32 ............................. ATCGCGCTATCGACGCTCGTTGCATCGCTCAA 12019 29 100.0 32 ............................. ATACGACGTGCCTCTGAGTTTGCGGATGCCCT 11958 29 96.6 32 ............................A ACTCGCCACCCAATGGCGGCTGCAACACTATA 11897 29 100.0 32 ............................. CGTAAATCCCATGTCTCTTTGAGGCGATGTTG 11836 29 100.0 32 ............................. GAGGTCACCAGATGCGCCATTACGGTCCTGAA 11775 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : ACACTAATTTCGCCGCATGCCCAATGTGAGGGCAATCGGTTCATCCCCGCAGGCGCGGGGAACACTGAGGTTTGGGTTAGGCGAAATACGCGCGTTCCGGTTCATCCCCGCAGGCGCGGGGAACACTGGGCTGTATTCTGGCTCAACCTCCCAGAGATCGGTTCATCCCCGCAGGCGCGGGGAACACTGAGCACCATCTAGCCTACCCCTGATTAATACCGGTTCATCCCCGCAGGCGCGGGGAACACATCGAAAACATCCACATGGAGGCTGCACGTGACGGTTCATCCCCGCAGGCGCGGGGAACACGACAAACGCACCACATCGCCCGCCGACATCGTCGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGGGCGGGGATGAACCGGATGGATTGCACAAACTGACGACGACTCTCGCG # Right flank : CCATCTCACGGTATTATCCTTAACGCCAAGCTGTGTTCCCCGCGTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATCACCCGCGCGTCACGGCAGGCGCGCACGAAGGCGTAGGCTTCCTGCGTGGCGAAGCCGGTGTCGAGCGCGATGCGCGCCAGCGGCATCGATGCGCCGCTGGCGTGGGTCCACTGCTCGTCGACCAGTTCGGCCAGCCGCTTCCACACCCCGTCGCGAGCAGTGTCGCCCATCAACACGCGGTGCTCCACCAGCCAGGACACCTTGCCACGCCCGAACGCCCAGACCGAGACTTCGATCCGGTCCTTCTGCACGTCGGCGCCGGCCGAGAGCAGCAGACCGCCCGCTGGCACTGTGCCGATCGGATAGTCCTCGCGGCGCTCCAGCAGGCGCTGCCAGTCGGGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12638-13032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12638 29 100.0 32 ............................. TCACGTGCAGCCTCCATGTGGATGTTTTCGAT 12699 29 100.0 32 ............................. GTATTAATCAGGGGTAGGCTAGATGGTGCTCA 12760 29 100.0 32 ............................. ATCTCTGGGAGGTTGAGCCAGAATACAGCCCA 12821 29 100.0 32 ............................. GAACGCGCGTATTTCGCCTAACCCAAACCTCA 12882 29 100.0 32 ............................. ATTGCCCTCACATTGGGCATGCGGCGAAATTA 12943 29 100.0 32 ............................. TCATGCCCGTCCTGCTGGCGGCCAACGACGGA 13004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : ACACGGCTGGAGCACCTCCACGCGGGATGAATTTGACGGTTCATCCCCGCCCACGCGGGGAACACCCTTGCCTGCGGGCACAGAGCGACTTGATGATCGGTTCATCCCCGCCCACGCGGGGAACACGTTCTGCTGTTAGGAGCAGTCAGTTTGAATGACGGTTCATCCCCGCCCACGCGGGGAACACGCCATAGGCAGTGGCTACCAGAAACTAGCCGACGGTTCATCCCCGCCCACGCGGGGAACACGAATCAACCCACAACCGGCCCTTAAACCTTTCCGGTTCATCCCCGCCCACGCGGGGAACACCGCGAGAGTCGTCGTCAGTTTGTGCAATCCATCCGGTTCATCCCCGCCCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAACCGACGATGTCGGCGGGCGATGTGGTGCGTTTGTC # Right flank : GCACGCCAATCGCATTTGGCAGAATTGACCAATGTGTTCCCCGCGCCTGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCCGGGGTCAGTTGTTGCGTGGTCATGTGTTGCTCCTTCGAGGTGGTTTGAACGTGGTGTGATGAACGCGCTGTTCGGCGGAGAAGCCAAGCGCTTTGTGCTGGAGGTTGCTGGGCGGGCTATGCCGCCCGGCGCGTCATGTCAGGCGTGGTCGTCTTCCTCTTCCTCGTCTTCGCCGCTCTCGATTTCTTCGATGGTGTCCTGCAGGGTGCATCCCGATCTGCCGAGGTAGCCGTGGTCGTGGGAGATCGCGCAGGTGAGGTGCGCCATCCAGTAGTCCTCGGCGCGAGCCAGGGCGCTACCGAATCCGCCGGCTTTCAGCACGCCGCGCACGTTTTCGATCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16589-16438 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16588 29 100.0 32 ............................. TCAAATGCGATCCCGGCATGCGGAGGGTGGTG 16527 29 100.0 32 ............................. GCGTGCAGTGGGTCGCCGGCCTGTGGATGGCC 16466 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GTCAACGAGAAGCACTCCGACTATTCCTGGTCGGACAACAAGCACTCCGGCCTCCTGTCGAGCGAGCAGACGACCAAGGAGCGCAGCAGCCAGAGCAGCACGGCGGTGGGTTCGTCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCGTCGAGATCGCGGGCGCCGCCTTCCTCGTGCGTGACTTGCGTGCAGTCGGCGATGGCTCCGAGATCCGTGCCAAGCTCACGCGCCTGTAATCCCCGATGGCAGCCAACTCCGTCCGCGAGCGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGTTCACTGTGCCCGGCTGCTGGCGCTGCCATGC # Right flank : CCTAAATTGGGCACCTCGATGCTGCGCCTCCAGTGTTCCCCGCGCCTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCAGGCGCGGGGAACACGGGCCGGTGATGGGATGGACAACGGGCGACGACGGTTCATCCCCGCAGGCGCGGGGAACACGTATCAGGAAATCCTCAGCGGAAAGAAAAATTCGGTTCATCCCCGCAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGGGGCAGGGCGGGGGCGTGCCAGCGATCAACATCACGACGCCGAACCAGAGCGGGCTGTCGTACAACCTGCTGCGTTCGCTGACGGTCGATGGCATTGGCCTGATCCTGAACAACAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 18540-18389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18539 29 69.0 32 NNNNNNNN....................T AAAGCGGGAATCAGATGGTGTGTGGCTTAGGC 18478 29 100.0 32 ............................. ATTTGACTAGGATCATAGTGAAGGCCCAAGAG 18417 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 89.7 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CACCAACTCCGCGTCGTCGTACTGGTCGAGTTCGTTCAACTTGACCAGTGCGCGGGACAACCACGGCTCGCCCCGGATCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACGCTGGCCAGCCAGTACCGCTATCGCGGCCTCATGCAGACCAACAACAAGCCGGCCATCCAGGGCGGCTTCGATTACGCGATTCCGGGCGGCCTGCTGCCCGAGGGCTTCTATGTCGGCAACTGGAATTCGTCGATCAGCTGGCTGAGCGACGCCAACGCCAGCGTCTCGGCACCGATCGAGATGGACTTCTACGGCGGCTACAAGACCGAGATCGTCAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATCATGCCATGATGAAGTATTTCTGAATTCAAGTGTTCCCCGCGCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGGACGCCGACGCCGTGGCGGCGGCCATTCCCGCGCGCTACCGGATCACCTACCGGACCCTGGCCGCCGACCTGGCGACGCCAGCCTGATGTCGTTCTGACAGCCGTTCTGGCCGCCGCTTCCGGCGGCCACCCGTACGTCCAAGCGCCCCCGTTCGGGCAGCGCTTACCCCCGTACCCATTTCTGCGTCACGCAAGGATTTTCTATGAGTACCTACGCCTCCTTCCAGGGGCGGGTTTATCTCGGCAAGCGAGATGCCGCGGGCATGCCCTATGAGGTGCGCTCGCCCGGCAACGTCGCCGAGTTGAAGCTGTCCCTCAAAACAGNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 5 25769-25618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25768 29 62.1 32 NNNNNNNNNNN.................. CTGGACGGGTTCATCCAATTTTTCCGGCAGCA 25707 29 100.0 32 ............................. ACGCTGCGGCCGGGCATGGTTCATCGAATGAC 25646 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 87.4 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CCACGCCCAGGCTGATGCGCAGCCCGTAGAGGATGCCCGAATACAGATCGCGCCCCTGGCCGTCGGTGCCGAGCCAGTACGTGAAGGTGCCCGCGCCGTTGGGCGAGCCCGGCGCAAGGCGCGCGTCCAGCACGTCCAGCTGCATCAGGTCGTAGGGGTTCTGCGGCGTGATCCACGGCGCGGCCAGCGCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTAGTCGAGCGTCCCCGCCCCGAAGGACGAATCGGTGCCCCGGATCGCCCCATCACCCTGGTCGCGCAGGTCATACCACTTGCCCTGCGCCATGTAGGACACGATGAGCGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCGCGGTTGATGGTCGAGTGGTACGACGAATCGTGTTCCCCGCGCCTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCGAGGACATCAAGTTCTCAGATCCGGCCGATGTTGGCGGCTCCTACGGCGAGTTCCTGCGCACGCAGTTCCGTGCGGTTGCCGCAGCCCTGGGCATCACCTACGAGCAGCTGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGCGAGCCAAGTCAGCGCCCCTGCCAGCTTGCCGGTGAAGCCGGTGGCCTGGTCGACCTGGTTGACGTACTGCCCGAATGCATTGCGCAATCGCTCGAACGCCTGTGAGACGGTTGCCGGCAGTTGC # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 6 1954665-1955545 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1954665 29 100.0 32 ............................. GTCGGCAAGCTGCCGTTCGGCGAGGACATGTT 1954726 29 100.0 32 ............................. AGATCAAACTGTGCCATGCCCTGGGAGGTTTG 1954787 29 100.0 32 ............................. TGTTGACATTAGGGGAGTGGCCGGGAGCTGAT 1954848 29 100.0 32 ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 1954909 29 100.0 32 ............................. CCGCCTAATCCAGGCGATGCGATCCATACCCC 1954970 29 100.0 32 ............................. TACTTGATCGATACTGACCAGCTCTAGCCTCG 1955031 29 100.0 32 ............................. CCTTTTCCGATACGGGCAGCTAGTGAAAAATG 1955092 29 100.0 32 ............................. CAGCAGCTAGTGCAGGTGCCGGGGACGTTCAT 1955153 29 100.0 32 ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 1955214 29 96.6 32 ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 1955275 29 96.6 32 ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 1955336 29 96.6 32 ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 1955397 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 1955458 29 79.3 30 ..A........TCA..........TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 1955517 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================ ================== 15 29 95.9 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : GAAGGCGAGAAGTGCGCCCAGGCCCTGATCGACACCGGCATCGTCGCCACCACGGCGATGCACGGGGCGAACGCGCCCGTGGACAAGACCGACTGGTCCCCGCTGGCCGGCAAGGCCGTGCTGATCTGGCCCGACCGGGACAAGCCGGGCTGGGAGTATGCCGACCGGGCGTCGCAGGCGATCCTGCAGGCGGGCGCCGTGTCGGTGGCCATCCTTTTACCGCCGGACGATAAGCCGGAGGGCTGGGATGCCGCCGACGCGATAGAGGAGGACTTCGACATCGGCGGCTATTTGGCGGCCGGTGCACGGGTGCCCGTGGTACTGGAGGTGGACGACACCGTGTCGGCGGAAGTGCTGGAGGGCGTGGACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGCCGGGCATGGTTCATCGAATGAC # Right flank : TTCAGCCAGCCCCATTTCCTCGATCGTTTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGAAAAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGACCGATCTCGTCTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 1964472-1964622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1964472 29 100.0 32 ............................. TCGTCGTGCTACCACTCGACGCAGTCGGAGAC 1964533 29 100.0 32 ............................. GCTTCAACGATCCTGTGGCGCGAAGATTCAGG 1964594 29 65.5 0 ...................NNNNNNNNNN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 88.5 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGTTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAAAACAAAAAAAAAAAAAAAAAAGCCGGCGCCGGCCTGCGGCTGGGCAATGGGCGTGGAGCGCATCATCGAACTGCTGCGTGAAGAGAAGCTGGCACCGGAGCCGCAGGGCTGCGATGTCTATATCGTCCACCAGGGCGACCAGGCCCAGGTGCAGGCGCTGGTGGCGGCCGAACGGCTGCGCGACGCCGGCCTCGACGTGATCCTCCATTGCTCGCCCGAAGGCCGCAACGGCAGCTTCAAGTCGCAGTTCAAGCGCGCCGACGCGAGCGGGGCATCCTATGCGGTTATCATTGGCGACGACGAAGTCGCGGCCGGTGTGGCCCAGATCAAGCCGCTGCGCGGCGAACCGAGTGCGGACACCCAGCAGACCGTGCCGTCCGACCAACTGGTCGACCGGCTGATC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 2947673-2947339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2947672 29 100.0 32 ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 2947611 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 2947550 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 2947489 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 2947428 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 2947367 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 92.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GTCCCAGAAGGCGGGGTCGGCGGCATCGCGGGTGGTGAAGACAGGGGGCTGGGCCATGCCGATACCGGGATCGATCAATGACGGGCCAGCCACGCCAGCACATGCGTGGCAATGATGCCGACCGCGAAGCCGCCGATGAACAGCAGCGCCGCCGACAGCAGGCGGTTGGTTCTGCGCTGCTCGGCCAGCAGCGCGGTCAGCGCGGCAGCCTGGGTGTTGCCGTTGTCGCGGGCGTGGCGCTCCAGGAGCTGGTGCGCCAGGCGGGGGAAGTCCGGCAGCATGCCGGCCCATTGCGGCGCCTCGATCTTGAGGCGGTCGACCAGGCCGCGCCAGCCGATCTGTTCGTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGCCCTGCCTCAACATCTTCAGCGCTGTAGTACT # Right flank : CCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCTGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCCCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 3457885-3459316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3457885 29 100.0 32 ............................. GCTCATCGCCTCCCCAGGCTTCGCGTTGTGCA 3457946 29 100.0 32 ............................. AGAGGGGGTGTTTGCCTGTGGCGCAAGGTGGA 3458007 29 100.0 32 ............................. CCCTTGTGACGATGCGTCTCCAGTTCCGACAC 3458068 29 100.0 32 ............................. CTGGAACGACGGCAGCTAAAGCGCTAGAAGCC 3458129 29 100.0 32 ............................. ACGACGTAGCCGACGTGACCGAGTAGGTCGGG 3458190 29 100.0 32 ............................. GCACGCGCGGGGATCACGAGAGCATCGTGAAC 3458251 29 100.0 32 ............................. CTTGGCCTCTTGGGCCCTCACCATGATCCTAG 3458312 29 100.0 32 ............................. CCATCAGCGAGCAGGTGGCGAACAGCACGTAG 3458373 29 100.0 32 ............................. TTGAGCGGCATTTTCTGCCAGAGACATGATTT 3458434 29 100.0 32 ............................. ACTTGATTGCTGTCGTGAGCGGGTTCGTGTCA 3458495 29 100.0 32 ............................. AGGAGATTAAAAATGCTACTGATTGCCGAAAT 3458556 29 100.0 32 ............................. CACGTAACATCAGGAAGCCTGTATCTGGGTCA 3458617 29 100.0 32 ............................. AGCCTCATGTCTGCCGAATTGAGGTGAAGGGC 3458678 29 96.6 32 ............................T ACAAGAACGTCAAGGTGACGACCGAGGCCGGA 3458739 29 100.0 32 ............................. ACCACTCACCGGTCTTCACGTCCGTCATGGGC 3458800 29 100.0 32 ............................. AGCTGCGCCGCTTACGTCTTTGGCTCCAGTCC 3458861 29 100.0 32 ............................. CCGTCAAAGCTGGCCGAGTAACGGCCATCGGT 3458922 29 100.0 32 ............................. TCGCAAGGCAGACCCAAAAACTACAATGGCAC 3458983 29 100.0 32 ............................. TCGCTGGGCAGGGTACGCCGACTTACATCGCC 3459044 29 100.0 32 ............................. CAGGGCTATTCACCCTCGCACGACATGACTCG 3459105 29 100.0 32 ............................. AGAGCCTGCTGCAATGGGTATGCGACACGCTC 3459166 29 100.0 32 ............................. CCCACCCTCGATATCAGCCCTATTGACCGCAC 3459227 29 100.0 32 ............................. CACGGTCGCCACATCGCGGGCCACGAACCACG 3459288 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGATAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGTTTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCATCCAGGCTCGTTTGGCGGCCAACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGACGATGACGTGGCCGAGACGATCGCAAAGCGGCTGGTGCCGATCAGCGCATAGACGACCAGCCCCGACAGCAGGGCGATCAGCCCGGCCTGCGGCGGCAGGTTGGCGATACCGGCGTACGCCACCGCTTCGGGCAGCAGCAGCCCGGCGATCGACAGGCCGGCCAGCACGTCGCGCAGCACGCGCTGGCGCGGCGGCATCGGCGGTGCGCCGAGCGGCGCGAAATGTTCGGGATGTTGCAGTGCGGAGGCGGGATGTCCGGTGGCGGAATCCATGGGCGGGGCGGTCGGAGGGAATCGGGGCGGGAAACGCGCCGCGCCCCGCGGCATGGCGGGGCGCAGCGCAGGGCACCGGCCGGGCCGGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 5526782-5526932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5526782 29 58.6 32 NNNNNNNNNNNN................. TCAATTCTCACATCAGAACCTAGCGGATGCGG 5526843 29 100.0 32 ............................. ACCGCCTCTTGCGCTTCGGTTCGGAATTGGTT 5526904 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 86.2 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : AGAAGACCGACTGGTCGCCACTGGCCGGCAAGGCCGTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCAGGGCGTGGAGGTGCTCACCAAGAGCATCTCGCAAGCCATCCTGAGCCGCGGCTACGTGACCACGCGCGTGCTGCTGCCCCAGCAAGACCTGAGCACCGGCACCATGCGCTTCGTCCTGGTGCCCGGCATGATCGGGCAGATCCGCTTCGCGCGGGCCGACGTACGGGGCACCTGGAAGTCCGCCTTCCCCTCACGCCCCGGTGATCTTCTGAACCTGCGCGACCTCGAACAAGGCCTGGAGCAGATGAAGCGCGTCGCCAGCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCCTGTCAGGTTCCACGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTTGCAGACTCGGCGGTTCATCCCCGCAGGCGCGGGGAACACTAGATCCGAGCGATTGCCCAAATCTCGTCGCCCGGTTCATCCCCGCAGGCGCGGGGAACACGGCTGAGCCAGAACAGCATGGCGCCGGTCTATTCGGTTCATCCCCGCAGGCGCGGGGAACACAAGCTCGCACGCGCCATCGCAGATGCAGGGTTCGGTTCATCCCCGCAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGCGCGGCATCACCATCACGTCCGCTGCCACCACTGCCTTCTGGAAGGGCATGGGCAAC # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 11 5527221-5527069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5527220 29 100.0 33 ............................. AATAGACCGGCGCCATGCTGTTCTGGCTCAGCC 5527158 29 100.0 32 ............................. GGCGACGAGATTTGGGCAATCGCTCGGATCTA 5527097 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CCGAGTGGCGCAGCTGCCGGACACACCATTTCCCGAACTCAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTCCGACTGCGGCTGCACGCCACCCACGGCGCAGTACACCATGCACGCGCCGTCCAGCACACGCATGGAACGCTCCACCTCGATGGTGAAGTCCACGTGGCCCGGGGTGTCGATGATGTTGATGCGGTGCTCGGGGTAGTTGTTGCCCATGCCCTTCCAGAAGGCAGTGGTGGCAGCGGACGTGATGGTGATGCCGCGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGAACCCTGCATCTGCGATGGCGCGTGCGAGCTT # Right flank : CCGAGTCTGCAACAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGTGGAACCTGACAGGCGGTTCATCCCCGCAGGCGCGGGGAACACAACCAATTCCGAACCGAAGCGCAAGAGGCGGTCGGTTCATCCCCGCAGGCGCGGGGAACACCCGCATCCGCTAGGTTCTGATGTGAGAATTGACGGTTCATCCCCGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGCTGGCGACGCGCTTCATCTGCTCCAGGCCTTGTTCGAGGTCGCGCAGGTTCAGAAGATCACCGGGGCGTGAGGGGAAGGCGGACTTCCAGGTGCCCCGTACGTCGGCCCGCGCGAAGCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 5528397-5528245 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5528396 29 100.0 32 ............................. TCGATCAAGCAGCACGCCTGGTTGGGCTAGCA 5528335 29 100.0 33 ............................. GAGGTCACCAGATGCGCCATTACGGTCCTGAAC 5528273 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTTTCCGGCGCCACCTCGGTGATGGCCTCGCCCGACGAACTGGTGCCCGGGACGCCGCTGGCGGGTCTCATCCAGCGTGAGCGCATCACCCACGCCACCCTGCCGCCGGCCGTGCTCGCCGTCATGCCCGAGGACAGCCTGGCCTCGGTGCGCTACCTGATCGTGGCCGGCGAGGCGGTCTCGCCCGCGCTGGTAGCGCGCTGGCACCACGGCCGCCGCATGATCAACGCCTATGGCCCCACCGAGGCCACCGTGCTCGCCTCGATGAGCGCGCCCATGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAGTTTCTGGTAGCCACTGCCTATGGC # Right flank : GATTGACCCAGCCAGGCTCTGAAAACTAAGTTGTGTTCCCCGCGCCTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTAATACGAGCCGGGCGACCTTGACCACCGGGGTGCCTGTCTTTGGCGGCAGCGGCAGCCTGGACGCGTACCGCGTGACCGGCGGCCAGATCACGGTGCAGGGCGCGGGCCTGAACGCCAGCAACGTCGATCAGGTGGACTTGATTGCGCGGGCGGTGTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTGCTGCCCGAGTCCGCGAAGCGGCCCGGGCGGCCGTTGCCAAACAACAGCAAGGAGTTTGAATGACGATATCCGCATCGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 5566348-5565892 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5566347 29 100.0 32 ............................. CGGGCCGGCCACGACAAGGCTATGTTGGATGC 5566286 29 100.0 32 ............................. CGCCATCGACCGGCAGCGTCTTGATGCTCGGC 5566225 29 100.0 32 ............................. AGCAGGACATGCAGCAGAAGATGGCTCAGATG 5566164 29 100.0 32 ............................. CTGCCGGGCACGCTGTACATGGCGCGCTACCC 5566103 29 100.0 32 ............................. ATGACCACGTGGTTGAACGGCTAACGTCAAAC 5566042 29 100.0 32 ............................. TCGACCATCGCAAAGAAGGGTTTCGACAAACC 5565981 29 100.0 32 ............................. ACATGAATGGCATTTTGAACATGCTGTCTGCT 5565920 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNGGCCAGACGGACTTCTACGGCCTGCAGGCGCTCGCCTGCCGAGCCATGCTTGAAGGCGGCGAGTGCCTGATCCGCCTGCGCCCACGCCGCGAGGAGGACGGTCTCGCCGTGCCGCTGCAACTGCAGCTGCTGGAGGCCGAGCACTTGCCGATGACCTTGAACGTCGACCTGCCGTCCGGCAATGTGGTCCGCTCGGGCATCGAGTTCGACAACCTGGGTCGACGTGTGGCCTACCACCTGTACCGGTCGCATCCGGACGACGGCAGGCTCGCGCCGATGTCGGGGCAGGGCGGGCTCGATACCGTACGGGTCGATGCGAGCGAGGTGATCCACCTGTTCCGCGTGCTGCGGCCCGGCCAGATCCGGGGCGAGCCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : TCCTCGTTGGTGCCGCTCTCTTCCTCGTGGTCGTGTTCCCCGCGTGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCCAGCGGCTGGCGCATCAGCACGCCAAAGTCGATCGACATGCCGACCGCGAGGAAGAACAGCCCGAGCAGCAGCCCCTTGAACGGCTCGATGTCGGTCTCCAGCGCGTGGCGGTATTCGGAATCGGCCAGCAGCACGCCGGCGATGAAGGCGCCCAGCGCCATCGACAGGCCGACGCTGTGCATCAGCAGCGCGATGCCCACCACCAGCAGCAGCGAGAACGACGTGAACATCTCGCGCATGTTGGTGCGGGCGATCACGCGCAGCACCGGCCGCAGCACGGTCCGCCCGCCGAAGATGACCACCGCCACCACGCCCACCGCCTNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.70,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 5568892-5568374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5568891 29 100.0 32 ............................. GCGGCGTTCAGACTGCGCTATCTCCCTACGAA 5568830 29 100.0 32 ............................. TTTCTGATAAAACCACGGTTCTATGCATCCCC 5568769 29 100.0 32 ............................. TAGGAGCGGCGTAATAACTGCATCTCGCGCCC 5568708 29 100.0 32 ............................. GGTTGCTGTTGTGTGGCTGTATTGCCCATATC 5568647 29 100.0 33 ............................. TCTGCGGCCTTGAACAGCAGATCACCGGCTACC 5568585 29 100.0 32 ............................. CCTCCCCTCGTCATCGGCAAGAGTCCACATCT 5568524 29 100.0 32 ............................. GTCCTACCGTTCCCTCCCTGCTCCCCAATGGT 5568463 29 100.0 32 ............................. CTGCTCGTCGAAACGGCCCGCCTGTCGCCGAA 5568402 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGTGATGCGGGGGAGAGGTGTTCCCCGCGCCTGCGGGGATGAACCGCGGCCTCGTGAAAACCTCGCTGTATCGCTTCCGTGTTCCCCGCGCCTGCGGGGATGAACCGACTGTTCGTCCGAGCCCGCCCGGAACTGCCCAGTGTTCCCCGCGCCTGCGGGGATGAACCGTGATCGGTCGGCGGGGGTTCCCCGTGGGTTGAGTGTTCCCCGCGCCTGCGGGGATGAACCGCAACGCATCGAGCCCTGTGAAGGTCACGAAGCGTGTTCCCCGCGCCTGCGGGGATGAACCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGCAGGGTACGCCGACTTACATCGCC # Right flank : ATCGGCGTGTTCACGCCGGAGCACAAGCAGCTGTGTTCCCCGCGTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGGGCAGTTCACCAACGACCACCTGTACTCGATCGACGCGATCACCATCGGCAGCCGCTACACCGTGCGGGGCTTCGACGGGGAGATGTCGCTGATTGGCGATCGTGGTTTCTACTGGCGCAATGAGCTGCAATTACCGCTCGGCCCGACAGGGCAGTCGCTGTATGGCGGGCTGGACTACGGGCACGTGTATGGCCCATCGACGGTTGGACTGGCAGGCACCCAACTGGCGGGCGCCGTGATCGGGCTGCGCGGGGGATGGGGGACGCGGGCCGGGTCGATTTCCTACGACCTGTTCCTGGGCACACCGGTCTATAAGCCTGTGGCGTTCCAGACGGCCAAGGTGACN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 5572979-5572828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5572978 29 100.0 32 ............................. TTTTGAGGCGGTTTCAATTGATAAATCCATTA 5572917 29 100.0 32 ............................. CAACCGACGCAAATGGGATCGCACGCGATATG 5572856 29 58.6 0 .................NNNNNNNNNNNN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 86.2 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GCACCCCAGGCGCCGTACTGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGCTCAGGTTGACGTTGCCGCCGGTGCTGCCGACCATGCTGCCGGTCTGCGTCACGGCGTTGTCATTGATCGTGTCCTTCTGGTTGCGCGTGCCGTACGAGATGCCCGAGCCGGTCGCCCCAAAGCCCGACTTGGTTGTCTCTTCGTAGCTATGGCTCGAACTGGTGTTCTCGGCCGTGGTGACGGTGAGGTTGCGACCGGCTTGCAGGTTGACGTCATTGGTCGCCGCCACCGTCGAGCCCTGCACGGTCAGGTCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCATGACATCCAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAACTGGATCGGCTACGTCATCCACCACGCGCCCGGTCCCATGATGGCGGTCTGGCCCACCGTGGAGATGGCCAAGCGGAACTCGAAGCAACGGATCGATCCGTTGATCGAGGAGTCGTCCGCGCTGGCCGAGCGCATCGCGCCAGCCCGCTCGCGGGACTCGGGCAACACCATCCTCGCCAAAGAGTTTCGAGGCGGCGTGCTGGTCATGACCGGCGCCAACAGCGCGGTGGGTTTGCGCTCGATGCCGGTGCGATACCTGTTTCTCGATGAGGTGGACGGCTACCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATCCGGCAGCCGCCCG # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 5573490-5573640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5573490 29 100.0 32 ............................. GTCACGACCTGCACGGTCTCGAAGGACGCGGC 5573551 29 100.0 32 ............................. TGATCCTAGGCCGCTGCCAGAACCACCCTCAC 5573612 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : GACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGACCTGACCGTGCAGGGCTCGACGGTGGCGGCGACCAATGACGTCAACCTGCAAGCCGGTCGCAACCTCACCGTCACCACGGCCGAGAACACCAGTTCGAGCCATAGCTACGAAGAGACAACCAAGTCGGGCTTTGGGGCGACCGGCTCGGGCATCTCGTACGGCACGCGCAACCAGAAGGACACGATCAATGACAACGCCGTGACGCAGACCGGCAGCATGGTCGGCAGCACCGGCGGCAACGTCAACCTGAGCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCAGTACGGCGCCTGGGGTGCTCGTCGCAACT # Right flank : GCCAGCTCCCTTGCCGTAGGCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCCAGCTCGCTGGAGGAAACCGCCTCCAGCATGGAAGAACTGACCTCGATCGTGAAGCAGAACGCGGATAACGCCCGCCAGGCGAGCACGCTGGCGGTCAATGCCTCGGACATCGCGGTCAAGGGCGGCGAAGTGGTCGGCCGCGTGGTCGAAACCATGGCCGGCATCAACGACAGCAGCAAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACCACGTTGAGCTGGTTGGCGTACACGGAAGCGTTGACCGACACCGCCCGCGCAATCAGGTCCACCTGGTCGACGTTGCTGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 17 5578220-5578069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5578219 29 100.0 32 ............................. CTGAGCGGCATTTTCTGCCAAAAACCAGAATT 5578158 29 100.0 32 ............................. ACCGCACGCGTGCAGGCGCAATTTGACTACGC 5578097 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : ATGTGGGGTGCCCGCCATGTGCGATTGCACCAAAAGCGGAGGGCTCCAACCAAGGGGTTTCACTAGGTTGCACCTCGCAGATGGCCGGGCGTATGATCCGCCCAGTTTGCCGGCCACAAGCAGGCAAGGCAGCTCTGGAAAGGAACCCACATGGCTACGACCACCCTCGGGGTCAAGCTGGACGATGCTTCGCGCGAGCGCCTCAAGCGCGCGGCGCAGTCCATTGACCGCACGCCGCACTGGCTGATCAAGCAGGCGATCTTCACGTATCTGGACCAGGTGGAGCGGGGGCAGCTGCCGAATGACGTAAAAGCAGATGCAAACGGCCCGGCAGCGGATGGCCTCCCGTCCGCCGCCACAGCCGTCGCGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGGCGGGGGTTCCCCGTGGGTTGA # Right flank : CCGGACGGGGTCATCCAATTTTTTCCGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCGATGGACTTCGCAGCAGGGCACGGTCGCGATCACCACGCCCGGTGCCGTGCAGGTGGCGGGCAGCACGATCGACGGCGTGGGCGGGACGACGGTGCAGGCCGGGTCCATCGCGCAGAGCGCTGCGAACGGGACGGCGGCCACGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGCAGCAGCGCCGATTGCGTCTCGTTGGCCGACGCGCCGGAGATGCGCAGCGCCTGCGAGATGCTCTCGGTAATGGTGAGCGCCTGCTGTTGTTCACCGCCGAGCATGCGCACCGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 18 5592607-5592941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5592607 29 100.0 32 ............................. TCAATCGCGCGGCTGTCCACAGGCCGGCGATC 5592668 29 100.0 32 ............................. ATCAGGGTAGTCGCCCTGGAAGCCCACGGGTA 5592729 29 100.0 33 ............................. TTGGGAGCAGTGCCTGCCGTAGTAAATGCGGTA 5592791 29 100.0 32 ............................. ATTTCTGACTTCAAAGAGAAAAAAATCCTCAC 5592852 29 100.0 32 ............................. CACGAAACGGCAACCAGGGTGCAGGGGCTCCG 5592913 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : GCAGCTGACCGTTGCGGAGCGCCAGACCGTCGAGCGCGTCAAGACCGTGTGGCGCCAAGCCATGGCCCAGCCGATGCTGTGGGGCAAGGATCTGGAGCGCGACCTGCTCGACTACATGGAGCAGCACCAGGGCGAGTTCTACCGCGATGGCGGTGTGGCGGCTTCGGACACGGTGCCCGCGATGCTGACGCCCGGCGAGTACGTGGTGAACCGGCAGGCAGTCGAGCGTCACGGCGTGGCGTTCTTCGACGCCATCAACAACCTCGCGCTGCCGGCACGGGCGCTGGTGAACAAGGTGCGGGGCTACGCCACGGGTGGGCTCGTCCAGCCGCTGGCAAGCATGGCGGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGCGGGGATGAACCGGAGTTCCTGCATACGGCCTCCAGACGAAAATC # Right flank : GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCACACGGTCAGCAACGCCCGGCCCGAGGCGTAGTCGATGGTGCCGGCCTGGGTGCCCGCGCCGGTATTGGCGTTGATGTCGGTGACCAGTGTGCCCAGCCGGTCCACGTAGACCTTGCCACCCAGGCCGAATCGGACACTGCCGGGCACGATGGCCTCGGCGTAGCGGTCGGTCAGGTCGACCTCCAGTTGAGCCAGCGTCACGGTCTCGGTGGCCGCGTTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGGCGCGGGGAACACTCTGCAACCGTACATGTTGTCGGCCAGCCCGCAAGGTTCATCCCCGCAGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 19 5593634-5593422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5593633 29 100.0 32 ............................. CGAGAGGAACCAATAGCGACTACTGGGTGGCC 5593572 29 100.0 32 ............................. GAGGAGAGATGGGTAAGGAGCTGCAGAAACTG 5593511 29 100.0 32 ............................. CGCGACACCCCGGCGATACAGGGGTGACTCTG 5593450 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCCCGCAATATCGGCGACACGCGGTTCATCCCCGCAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGCAGCAGCGCCGATTGCGTCTCGTTGGCCGACGCGCCGGAGATACGCAGCGCCTGCGAGATGCTCTCGGTGATGGTGAGCGCCTGCTGCTGTTCGCCACCCAGCATGCGCACGGCCTGCTGCAGCTTGCCGTACAGCGTGGCCGTCTCCTGGATCGGCACGCCGATGCGCTGGGCGATGTCGAAGAGCGCGGTCTGTGCGGTCGTGAACTCGCGCTGCCCGGCGGTCGCCAACTTCAGGCGCGCGGCCATCATGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGCGGGCTGGCCGACAACATGTACGGTTGCAGAGTGTTCCCCGCGCCTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAACGCGGCCACCGAGACCGTGACGCTGGCTCAACTGGAGGTCGACCTGACCGACCGCTACGCCGAGGCCATCGTGCCCGGCAGTGTCCGATTCGGCCTGGGTGGCAAGGTCTACGTGGACCGGCTGGGCACACTGGTCACCGACATCAACGCCAATACCGGCGCGGGCACCCAGGCCGGCACCATCGACTACGCCTCGGGCCGGGCGTTGCTGACCGTGTGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTTCATCCCCGCCCACGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 20 5594145-5594356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5594145 29 100.0 32 ............................. CGACTGGCCAACGAAACCGCCGCTTGCATCAC 5594206 29 100.0 32 ............................. GGTTATCGGACCAGTTGATCTTCACGACTATG 5594267 29 100.0 32 ............................. AATAGGCCGCCATCACTGACCGAGGCCGTCGA 5594328 29 82.8 0 ........................NNNNN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACATGATGGCCGCGCGCCTGAAGTTGGCGACCGCCGGGCAGCGCGAGTTCACGACCGCACAGACCGCGCTCTTCGACATCGCCCAGCGCATCGGCGTGCCGATCCAGGAGACGGCCACGCTGTACGGCAAGCTGCAGCAGGCCGTGCGCATGCTGGGTGGCGAACAGCAGCAGGCGCTCACCATCACCGAGAGCATCTCGCAGGCGCTGCGTATCTCCGGCGCGTCGGCCAACGAGACGCAATCGGCGCTGCTGCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGCGTGTCGCCGATATTGCGGGAAGCCATGTTGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTGTCAGGTTCCACGTCTTCCGCAGAGTGGAGTGTTCCCCGCGCCTGCGGGGATGAACCGCGCTATCGAATCGATCTGAGCCCCGTAGAGCGGTGTTCCCCGCGCCTGCGGGGATGAACCGCGCGCGGTGCATTCGGATGTGACGGATGTAGAGTGTTCCCCGCGCCTGCGGGGATGAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCCATTCCCGCCAAGAGCCTCCGGCTCTCCGTGGATGAGGGTTCGTGGGCCTGGGGGCTCTCGGCGAGCCTGCCTTACCGGGCGCTGGAAATGGTCGAGCCGACCGCGTCCGGGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 21 5594487-5594637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5594487 29 100.0 32 ............................. CGCTATCGAATCGATCTGAGCCCCGTAGAGCG 5594548 29 100.0 32 ............................. CGCGCGGTGCATTCGGATGTGACGGATGTAGA 5594609 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CTGCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGCGTGTCGCCGATATTGCGGGAAGCCATGTTGCGTGTTCCCCGCGCCTGCGGGGATGAACCGCGACTGGCCAACGAAACCGCCGCTTGCATCACGTGTTCCCCGCGCCTGCGGGGATGAACCGGGTTATCGGACCAGTTGATCTTCACGACTATGGTGTTCCCCGCGCCTGCGGGGATGAACCGAATAGGCCGCCATCACTGACCGAGGCCGTCGAGTGTTCCCCGCGCCTGCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTGTCAGGTTCCACGTCTTCCGCAGAGTGGA # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCCATTCCCGCCAAGAGCCTCCGGCTCTCCGTGGATGAGGGTTCGTGGGCCTGGGGGCTCTCGGCGAGCCTGCCTTACCGGGCGCTGGAAATGGTCGAGCCGACCGCGTCCGGGCCGGTGGAGATCGAGATCACCATCAACGGTGTGACCTGGGTGATGCTGGTCGAGGGGTTCGATGTGCGGCGCGAGTTCGGGCAGGCGAGCCTCAACATCCGGGGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCCGGCGGCGCGGTCAATACCACGGCCGCAGGGGCTTTCATCAATGACCGGGGCCATTTGTCGAGCAGTGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 22 5595663-5595512 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5595662 29 100.0 32 ............................. ACGTTCCGCAGCAGAATGCGGCAACGATGATG 5595601 29 100.0 32 ............................. CGTTTGTGTATTACTCATGTCATGACATCCAG 5595540 29 65.5 0 ...................NNNNNNNNNN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 88.5 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : ATCACCGCCGGCCAGGATCGGGTTCGTGAAACCGAACTCCACCATGCTGGCGGCGATCTGCGCGATCTGTTCGTCGGAGTGGGTTCGGGCGTTTGCCGCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCATCCCCGCAGGCGCGGGGAACACCCGCAATGAATTAATGAGCCCGCAATCGCGGGCGGTTCATCCCCGCAGGCGCGGGGAACACAGTCCATTGCCTTATCCGGAGCGCTGCCCTACCGGTTCATCCCCGCAGGCGCGGGGAACACTGCACGCGCTGGATGACATCCTCGGCGGTCAGCGGTTCATCCCCGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAGCGCCGTTGGCGCCAATGACGCCACCCTGCGCACCGTCGGATGTCGTGCCACCCGCGTTGGTGATGGAGGTGCTGGCGTTGACGGACAAGCCGTCCGTGTTCAACGAGACCAGACGTCCTGCAGTGTTGTCCACCGAGGCCGCATTGACCGTCAGCGCGCCGCCGGCTTGCACCGTGCCTTGCGCATTGTTCAGCGCGCCGGTCGCCCGGAGGCTCGTCGCCCCTTGGCTGACGATCTGGCCGCCGGCATTGGAGACACTGCCCGCTGTGATGCCGGTAGCGCCACTGCTCGACAAATGGCCCCGGTCATTGATGAAAGCCCCTGCGGCCGTGGTATTGACCGCGCCGCCGGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 23 5595812-5595962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5595812 29 100.0 32 ............................. GTAGGGCAGCGCTCCGGATAAGGCAATGGACT 5595873 29 100.0 32 ............................. CCCGCGATTGCGGGCTCATTAATTCATTGCGG 5595934 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CGTTGAACACGGACGGCTTGTCCGTCAACGCCAGCACCTCCATCACCAACGCGGGTGGCACGACATCCGACGGTGCGCAGGGTGGCGTCATTGGCGCCAACGGCGCTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCAGGCGCGGGGAACACCTGGATGTCATGACATGAGTAATACACAAACGCGGTTCATCCCCGCAGGCGCGGGGAACACCATCATCGTTGCCGCATTCTGCTGCGGAACGTCGGTTCATCCCCGCAGGCGCGGGGAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGCGGGGATGAACCGCTGACCGCCGAGGATGTCATCCAGCGCGTGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCGGCAAACGCCCGAACCCACTCCGACGAACAGATCGCGCAGATCGCCGCCAGCATGGTGGAGTTCGGTTTCACGAACCCGATCCTGGCCGGCGGTGATGGCGTCATCGTTGCGGGGCACGGCCGGCTTTCTGCCGCCATGAAACTGGGGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGTACTGGACGGCAACGGTCTCGGCGTATTCCAGCACCTATTTCCAGCAGATCGCCGGCGTCAACCAGACCTTCGTGTCGAGCGGCAATTCGCAGAACTTCGACGTCAAGCTGCAGCGCGTGATCGAGCGCTCGCAGAAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 24 5598915-5599126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5598915 29 100.0 32 ............................. CTGCTGCCAATCATAGTCCAACCGCGCGCCCT 5598976 29 100.0 32 ............................. TCTGCGGGGCGGATGCATGGCGCGGCTGTGCT 5599037 29 100.0 32 ............................. ATAAATTCTCCCGATACGTGGCGGCGATTCGG 5599098 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CAGCGGCACGGCGAGACCGTCCTCTTCGCGGCGCGGGCGCAGGCGGATCAGGCACTCGCCGCCTTCGAGCATGGATCGGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACGGGGCTCGCGTGGCGCTCGGCGCTGTCGCTCGACTTCGGTACGCACCCGTGTGGGCAGCCGGGTACCGGGGTCTTCAGTGTCCCCATCCTCAAGGTCTACTTTGTGAGCAACTCCGTCGACGTCGTGCGCCTGCCCGGCCGCGAGCCCATTCCCGCCAAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGCGGGGATGAACCGGCTGCGTGTCCGGAGCATCTTTCGGATAGCGG # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCCGGTGAAGTGGCTGGTGTCGATGTCCACGCCCTTGACCACGCCCGGCCGGGCCAGCTTGACGATGCAGTGGTCATAGCCGCCGTTGCGGCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGGGCAGCTCGCTCAGTCTGTATCCGCCATTATCGTGTTCCCCGCGCCTGCGGGGATGAACCGTACGGCGTGGGCGTCTGGCAGCAGCAGAACGCGTGTTCCCCGCGCCTGCGGGGATGAACCGTTCTACCTACTGTTCGTCTTGCCGGTTGTCGTCGTGTTCCCCGCGCCTGCGGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 25 5599482-5599633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLS01000001.1 Ralstonia solanacearum strain CFBP6783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5599482 29 100.0 32 ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 5599543 29 100.0 33 ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 5599605 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CCCGCGCCTGCGGGGATGAACCGTCTGCGGGGCGGATGCATGGCGCGGCTGTGCTGTGTTCCCCGCGCCTGCGGGGATGAACCGATAAATTCTCCCGATACGTGGCGGCGATTCGGGTGTTCCCCGCGCCTGCGGGGATGAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCCGGTGAAGTGGCTGGTGTCGATGTCCACGCCCTTGACCACGCCCGGCCGGGCCAGCTTGACGATGCAGTGGTCATAGCCGCCGTTGCGGCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGCGGGGATGAACCGGGCAGCTCGCTCAGTCTGTATCCGCCATTATC # Right flank : GCTGGACGGGGTCATCCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTTGAGGTTGCCCCTGAAGAATGTCTCCCTTGCTGAGGGTTCAAACTTGAGCAAGGAGGTACAGAAATGGGTAATCCGAGAGCGCGGTACACGTTGGAGTTCAAGCTGGAGGCGGTGCGGATGGGCAAGGGGGGGCAGAGCCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGACCGAGATCGTCAAGGATGTGCCGATCGACGTGGGCGTGCTGCAGTACTACTACCCGGGCAGCTACCCCGAGGGCTTCACCCGCCCGCATACCACCGAAGGCTATGCGCAGATCGGCTANNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //