Array 1 18403-19218 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000068.1 Clostridioides difficile strain LC3P-056.5-6 NODE_68_length_20758_cov_13.8849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 18403 29 100.0 37 ............................. TTTACTCCTTGTATAATGTAATCACCTTTGTTAGCTC 18469 29 100.0 36 ............................. CAGTTTAGACAAGCTTTCAGACGACTTCGGCTTGAC 18534 29 100.0 37 ............................. CTTTCCAGTTCGACACTTAATCATATCTAATATTAAA 18600 29 100.0 37 ............................. ATTTTAAAACCTAGATTGTATAGCTCTTTATTCAATT 18666 29 100.0 36 ............................. ATCTTCTTGTTTGTTCTCTTGATTTTTCCGCCAAGC 18731 29 100.0 36 ............................. TCTCTTAGTCTTGTAAACATGTCGATAGCTGCTTGT 18796 29 100.0 37 ............................. CTAATTTTAACTGGCTTTATGCAACAATATAGGGCTA 18862 29 100.0 36 ............................. AAATTGTAAGAGAATCTTTTGATACTTATATAAAGT 18927 29 100.0 37 ............................. AATCCAAATCCAGATTGGGGAAACAATGATAATGATG 18993 29 100.0 37 ............................. GATAAAATTGAATTTGGCTTTAATGATATATCTAATT 19059 29 100.0 37 ............................. CCAGATATTGAGATAAAACCAGAACCACCTAATCCAA 19125 29 100.0 36 ............................. TCTTCATATTTATTCATGTATTCAATGATAGCATCT 19190 29 89.7 0 .......................GC.G.. | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 99.2 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TTAAATTGTACTATATTAGTTATAAAATACCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATATAAGCAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGACATGTTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATAATTCTATTTAGATATGTTTTTAAATTTATTATGTCTTAAACATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATTGCATAAATGGCTGTAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGCGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : TATACCAGAAAGTATATATAAAATTATGTGTAAACTATATTGTTATGAGTACAAATAATATTTACCTATTCATTAAAAAACTTAACTAAGAATTTGATTTATATTATTGAAGTATCAATAATTTTGGAAAGTAGAAAATTATACCCCAATAATACCCCAATTACAAAAATAAACAATAAAAAATAACCAAAAAAATTGCTTCAACATCATGACCAAATAGCTATATACCTACACTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTATCCACCATTGAAATCCACGAATACCTATATCCAATTGGATATAGGTATTTTTATACATTTTTAATTTAAATATTATTGATAAATACATTTAAAAAGTGTTAACCTAAAGTGAATAATCTAAATAAAAATACAATACTAGGAGAGGTCATCATTACAATAGCAGCTTGTGATGATGAAAAAGAAATACAAATCGTAATAAAAAATCAAGTTGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 102112-102801 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000006.1 Clostridioides difficile strain LC3P-056.5-6 NODE_6_length_106825_cov_18.5231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 102112 29 100.0 37 ............................. TTGTAACTTCTTTATTTTTTTTATTCAAAAATGCTGA 102178 29 100.0 38 ............................. TATAAATTAGCCATTAAAGAACTATTTTTAACAACATC 102245 29 100.0 37 ............................. AATATTCTACTGTTTTAGTTTGTTTTCTTAGAAGAAA 102311 29 100.0 37 ............................. TATTAAAATAATAACTTTTCTATTTTTATATGATTAA 102377 29 100.0 38 ............................. TTAATTAACTTTTCATTATTTTTATTTATGTTGCCTTC 102444 29 100.0 37 ............................. TATAAATTTCATTATTTTTAATTCAGCTTGAGGTATC 102510 29 100.0 37 ............................. TCTTGCTTTTCTATAACTTCAACTTTCCCGTTAGAAG 102576 29 100.0 37 ............................. GAAAAGCTTTGAGAGAAATATGCAAAGTAGAATCAGC 102642 29 100.0 36 ............................. TCTATCTTTGAATAATAAGACTTAGATATGCCTATT 102707 29 100.0 37 ............................. TATAAGCTATCTCATTGAGTGAATCAGCTATAATCTG 102773 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TTGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCTATTTTATCTCTAAATATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 59538-60692 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000007.1 Clostridioides difficile strain LC3P-056.5-6 NODE_7_length_99965_cov_21.3993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 59538 29 100.0 37 ............................. GTAAAACTGCACTAGGATTTAATCCTAGCATCCATAT 59604 29 100.0 37 ............................. TCAGCATATTCTTCTAGTTCTCCAGCGTCCAGTTTGG 59670 29 100.0 37 ............................. AAAGAGGTGATGTCTAGTTTTAGCTTTGAAACGTATG 59736 29 100.0 37 ............................. TATAATTTATTAGCTTGTTTCAATAATTCTAATTGAT 59802 29 100.0 36 ............................. TCACTAACAGGAACATCAAAAGGAGGTTTAAAATCT 59867 29 100.0 37 ............................. GAAGTTAGAAGAGGAACACACTTACTTTTAACTTTCA 59933 29 100.0 37 ............................. GAATAAAAATAAATCAAAGTTACTACCCCCCAATAAA 59999 29 100.0 37 ............................. ACACTTGAAAATTTATTTTGCAATTCCTTTAAAAAAT 60065 29 100.0 37 ............................. CTTATTTCTAATATATCAAGATAGAAAGAAACTATCG 60131 29 100.0 37 ............................. AAATTCATCAATATAACTACAGAAGGTTTTGTAAATG 60197 29 100.0 40 ............................. ACTTTAGTTGCAGCTGCAAATGCACCACCAACTCCAGCAG 60266 29 96.6 36 ............................A ATCGAATTGAAATATTTATTAGCAGGAGCAAGTTTT 60331 29 100.0 37 ............................. ATGGATGCAGTTTTAGGTGATGCTTATATGGTTCAAG 60397 29 100.0 37 ............................. GATTCTGAGTTTAACGTTACTATAGAATATACTACTT 60463 29 96.6 37 ..C.......................... AATACAAGTGTATATTTGAAATCTAAATATAACTATG 60529 29 100.0 37 ............................. GTAAAAATGGTTTCTTTTAAGGAATCTTTTATGAAAA 60595 29 100.0 40 ............................. CCATATTGGGATATAGTAAAATTTTCAGGAAATGTATATG 60664 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 18 29 99.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATTAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCGGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATCGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTCAAACTATTTTCAGATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5522-8065 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000082.1 Clostridioides difficile strain LC3P-056.5-6 NODE_82_length_14433_cov_12.5863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5522 29 100.0 37 ............................. TTTTTCAGCATCTAACATAATTAAAATTCTTTCTTTT 5588 29 100.0 36 ............................. ATAACATACAAATTTTGTGTTCTATATGGCTTATAG 5653 29 100.0 36 ............................. CTGGAATATCAAGATATTGCAAGTATAAGAGGTTGT 5718 29 100.0 38 ............................. TAAAAACGATTAAACCAAAAAACATCAATCTGATTAAA 5785 29 100.0 38 ............................. ATGTATTAACCTGTATGACACATTTTTCCTCATCTTGA 5852 29 100.0 37 ............................. TTATTTAACAACATAATTTTACGTCCTGCATTACTAT 5918 29 100.0 38 ............................. AAAAGTCAAACAGAAAAAGAAAAGATAAATGAGATAGA 5985 29 100.0 38 ............................. AGACTAAATAAATCTGTTTTATAAAAAGCGTTTAATTG 6052 29 100.0 37 ............................. TTTGCTTTAGCTTCTGCGTTTCCTGTCGCTGACTCGA 6118 29 100.0 36 ............................. CAACTTTTAGTCTTTCATCAAGCGCTTTTATTTGTA 6183 29 100.0 39 ............................. TTTAGCATATCAGCAAATCTATACTTATTTACTTTACTT 6251 29 100.0 37 ............................. TGAGTATTGATATAATCAACAATTTCCATATCACCAA 6317 29 96.6 36 ............A................ AGTTTTGAAGAGCAAACAATAGATTTTTACGACTCA 6382 29 100.0 37 ............................. TTTCCATTTCCAACATACACTGCATGTTCTTTAACAA 6448 29 100.0 37 ............................. TCTATTATCTAAATCTATATTGTCCCATCTAAATTGA 6514 29 100.0 38 ............................. AAAAAAATAACTGAAACTTATCATGCAAAAGGTGATAA 6581 29 100.0 37 ............................. GCATATTCTAATAATATGTATCTTTGGCAAGAAAATC 6647 29 100.0 36 ............................. ACTTCAAAGGCTGTGTTTACTATCTCACTATCTCTA 6712 29 100.0 37 ............................. GTATTATTCCAAGTATGAGAAACAGAATCTGACTCAG 6778 29 100.0 37 ............................. GTTTATAAAAGCTGAGGATAAACTTTCTTGTATCTTT 6844 29 100.0 38 ............................. TCTCATGACAATAGAATAAATGTAATAAACAAGCATAC 6911 29 100.0 37 ............................. TATATTTCCCTTTTTGAAAATTCTGAAAGAGGCATAA 6977 29 100.0 37 ............................. TAGGATATAGAACGAAAGGTACGGACGGCAAATATAG 7043 29 100.0 37 ............................. CAACAAGGTTCTGGTGATTTGGTTATTCCAGGTGATT 7109 29 100.0 37 ............................. ACATAACCAAAACTCTCAAAATCAATACCTTTAATTT 7175 29 100.0 37 ............................. TTATCCGCAGTTGCGGAAATAGGAAAAACAACAGAAA 7241 29 100.0 38 ............................. TCAGATTAAACGAGAGTTTGGAGTAGATAGTTATAAGG 7308 29 100.0 37 ............................. TAATTGCATCAAGACCAGGATGGGAGATATGGCGACG 7374 29 100.0 36 ............................. ACATATGTCGCTTCATCAGCAGGAACAGATAACAGG 7439 29 100.0 38 ............................. AGCTATAAAACTATATCAGCAAAATGTGGATGTAGTGA 7506 29 100.0 36 ............................. AGTGAATGTGACCAATTTTGTGACGAATTATCAGAG 7571 29 100.0 38 ............................. TGGTTAAATCTCCAACAGAACATTTATCTAAATTACAA 7638 29 100.0 39 ............................. TAGAAAATAACGTCAGTAGTATTAGCAGGTAAATCTAAA 7706 29 96.6 37 ...............T............. AACACTTTAAAAACTAATGTATTCAGTATAAGAGATT 7772 29 96.6 37 ...............T............. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 7838 29 93.1 38 ...............T.C........... AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 7905 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 7971 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 8037 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 99.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAACTTTTTTATCCATATCGTTTAAAAGATGAGAATATCTATTTATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGATATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTAGCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATACATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAAATTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 65001-67589 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000012.1 Clostridioides difficile strain LC3P-056.5-6 NODE_12_length_74769_cov_17.063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 65001 29 100.0 36 ............................. TCAATTGATGGCACTTGTGTTTGTATACCACCTTGT 65066 29 100.0 36 ............................. GTGAAATTAGATTTCATATTGTTTAATCTATTTTTT 65131 29 100.0 37 ............................. AAATACATAGCATTTTTGTAGAAAATTTTATATACTT 65197 29 100.0 37 ............................. TTATTTTCAAACTTTTTTTCATATCCTCTGCTACAAT 65263 29 100.0 37 ............................. TTTCCTAATGAACCATGGTATTCTTCTGTGTCGTAAC 65329 29 100.0 35 ............................. GAAGATGAAAACGACAAATTAGAATGGGAACAAAA 65393 29 100.0 37 ............................. CATGAATAATTTATCTTGCGTTCATCTAGTAATAATC 65459 29 100.0 39 ............................. TCTTTTACACCTCGATTTGTAAATCCTAAATCAGAAATT 65527 29 100.0 37 ............................. TAGATTTAGTCATATACTTAAAAACTTCATAATAAGA 65593 29 100.0 36 ............................. TTTTTCTATTCCACCAAAAAAACCACCAATGCCATT 65658 29 100.0 37 ............................. ATGATTTTAACTATTTCGGTGTCCTCTTTTAAAGACT 65724 29 100.0 36 ............................. TTTATCCTTCTAATTTTAAATTTTAGAATTTTAAAA 65789 29 100.0 36 ............................. ACGCTAACGCAAATAATTCTCCTAGCTGATGTATTA 65854 29 100.0 36 ............................. CGCCTTTTATGTGAATCAAGAATTTTTTGATTAAGT 65919 29 100.0 38 ............................. AAATTTGTAATATTATATAATCATCCTAAAACAAAAGG 65986 29 100.0 36 ............................. ATAATGTATTAGTGAGTAGAGTAAAAACAAATTTCA 66051 29 100.0 37 ............................. TGAATCTGACGAACTCTATATAAAGCAAAAAATAAAG 66117 29 100.0 36 ............................. CGAAGAGTTTTTTAATACTTCTTTTTCTTTTTCCAT 66182 29 100.0 37 ............................. AATTTTCTATGTTGAGTATAAAAATTTATCCAACCTA 66248 29 100.0 37 ............................. TTTTTGTTATAGCCATGTGTAGCGTATGTACCCGAAC 66314 29 100.0 37 ............................. TTTTTTAATAAGCTATGACCTACTGATAAACATATTT 66380 29 100.0 37 ............................. AATTTATTAGCTAAAATTCTTCTGTTATTAAAGCTAG 66446 29 100.0 37 ............................. CCTGTAGCACCTTTTATTATATTCTGCACTGAACCAC 66512 29 100.0 36 ............................. TTGTAAAATCAGCGTTATTTTTTTATGATGGATATA 66577 29 100.0 37 ............................. TAACCTCTTTTGTTAGTCCATGAACTTTTGCCTTTTC 66643 29 100.0 37 ............................. TGTAAAGAGAAAAAAACAAAACTTTAAAATTTTCATA 66709 29 100.0 37 ............................. AAAGTAAACCCATGCACAACATAATTTTTAAATAAAT 66775 29 100.0 37 ............................. ACATATACATGCAAGGTAGTTTCTTTTTTTAATGTAA 66841 29 100.0 38 ............................. AGATTTAAAAAAACAGGTACTAAACAACCTGCTCTCAC 66908 29 100.0 37 ............................. GGAAAAATATGGGAAAAATTAACTAATATAATGCAAA 66974 29 100.0 37 ............................. TTTAGATACGCAGAAGAAGAAATTATAAGTTTAAATG 67040 29 100.0 37 ............................. GTGGGATTTTAAAGTATGCAAATAAAGGTCTTTCAAT 67106 29 100.0 36 ............................. GGGAGCGCAAGCAGGGCTAAATCAAAATGACGACAT 67171 29 100.0 36 ............................. ACGAAAATTAGAACTACCATATTTACTGTAAACTAT 67236 29 100.0 38 ............................. GACATAAAAAACACCCATAATGGAAATCGCAATTGGAG 67303 29 100.0 34 ............................. CTTGATAATATTTCAGCATATGATACTGAAGATG 67366 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 67432 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATTAATGAGTATTTAGAAACTT 67497 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 67561 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 40 29 98.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACACAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATATATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : TAAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAGTAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAACTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 59615-61231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000013.1 Clostridioides difficile strain LC3P-056.5-6 NODE_13_length_73235_cov_17.838, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 59615 29 100.0 37 ............................. TTTCATCAAATTATCAAATTAAACTATATAAGTTAAA 59681 29 100.0 37 ............................. AGAGAATGCTTAATTAACTATAGAAGTGTATTGGCAG 59747 29 100.0 38 ............................. TCCTTTTCAAATTTTACAACATCAGAAGTTAAAATATC 59814 29 100.0 37 ............................. CTAACTCTTCATTTTATTAAATATAAAAATTAAACAA 59880 29 100.0 35 ............................. AATTTATCCTCTAAATTTAAAAAAGGACTATTAGG 59944 29 100.0 38 ............................. AAAGACAACGACTCATTCTTGGTATTTGACATAGAAAA 60011 29 100.0 37 ............................. AGAAATATCAGAATTTTGTGGGCTTGGTTGGGAGATA 60077 29 100.0 38 ............................. AAAAACAAAAAATCCAACTTTAGATTATTATTTTGATT 60144 29 100.0 36 ............................. ATACTCATTATTGTAAAACATATAATCACCTCCTAT 60209 29 100.0 39 ............................. GCCAAACAACTTACTTAAACGTTCTTGTTCTGCTTCTAT 60277 29 100.0 37 ............................. TATAAAATTCTTCTTCTGTAAAGCCTTCTTTGAGTCT 60343 29 100.0 38 ............................. TAAACCACATACACTTTTTTAAATGCAGCACTACCAAA 60410 29 100.0 37 ............................. CTCTTTTTGAACACAGATTGCTTTCTCTTGCTAAAAT 60476 29 100.0 37 ............................. CTGGGCGTTTCTGTTTTTTCAAGAGCAGTTGACTTAA 60542 29 100.0 37 ............................. CGACAAAATTAACTATAACCTCGTAATTATCTAAGTG 60608 29 100.0 38 ............................. ATAAGTTACAGCAGTAAAAAGACTGACAGGAACAAATC 60675 29 100.0 37 ............................. AATATTAATTATATAATAACAGAATAAAATAAAAAAG 60741 29 100.0 37 ............................. CTAGAGATAAGAGGTTTCTGCTTTTTATTTTCTTCTG 60807 29 100.0 37 ............................. AACATTCTGCTTACATCTGATAGAAAAAACAGTTCTT 60873 29 100.0 38 ............................. CATTGAATCTGCTTATTAATACTATATTTACATACTAA 60940 29 100.0 37 ............................. TTGATAAATATACACCAGTAGAAGATTAGATTAATAG 61006 29 100.0 37 ............................. CGCTTATAATTTTTAATTGCATATTCAATAAAAAATT 61072 29 100.0 37 ............................. TATTCTTTTGCCAACTTTATTCCATTATTCAAATCTT 61138 29 96.6 36 ............................C TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 61203 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAATTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGCTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 31689-31980 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000018.1 Clostridioides difficile strain LC3P-056.5-6 NODE_18_length_66435_cov_21.0361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 31689 29 100.0 37 ............................. GAAATAGCGAGAATTATTGTGTCTATAGGAGCGGTAG 31755 29 100.0 36 ............................. AATTTAAAAAAGTGTATTTATAATATTTTTAAACAA 31820 29 100.0 36 ............................. TTTATTTTACTTGTAATTCCTCCAAGTATACCACTT 31885 29 96.6 38 ...............A............. CAGATGAACGTAATAAGTTCGCTGAAATGGAAGCTAAA 31952 29 86.2 0 .....................C.AA...T | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 96.6 37 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTTGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATAATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTACGATTTTTTATATACATTGGATGTAATCATTGAAATTACTACGATATAAGCATATTTTGTAATATATCAAAAACATTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGAACTGGAAATGCTTAATTTATTTTGGG # Right flank : TTGAATAAACGCACAAAACATCTACTTAAACATATAGGTGTTTTTAGTGTAAATATTTTTAAATAATTGGATAAATTTCCTAAATCAATAGACTAAATTATTAATTTTAGATAGAATTATATTTGAATAAATAATTTAATAGGGGAGATTATATTATGAAATTAACAAAAAAAGTATTAGTTTTGAGCATAATAGCATGTTTTTCTGTAATGATGTTTATGACGGGATGTACTAGTTCACCAGAACCTAAAATGGAGGAAGCTGGTCAAGAAATACCAAAAGAAGAGGAAGAGATACCAGAAGAAAGCATAGATAAAGATAAATTAAATCCAGAAGAATTTTTGGGTTGTCAAATTAAAGAGTTTAAAGATGGTTGGCATGCATTAGGGCAGATAGAAAAAAATGTAAATGATGGAAAAATGACTAATGATAATTTAAAAACAGTGGCTGACTTATATGAAAAGCAGTTTAGCACTTTGAATGAAGAAATTGAAAAGTAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 47897-47536 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000028.1 Clostridioides difficile strain LC3P-056.5-6 NODE_28_length_50822_cov_16.5345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 47896 29 100.0 37 ............................. TTATTTTGGGATATAACATATCCATAATTTTACAAAC 47830 29 100.0 37 ............................. CCACCTGCATTGAAATGTATTGATATGAACCAATCTA 47764 29 100.0 38 ............................. ACGCTTCCTACTTTTGAAGTTCATAAAGATGATTTAAA 47697 29 96.6 37 .......................A..... AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC 47631 29 100.0 38 ............................. CCGTCTTTTGTTGCTTTACATAAATTTATATTACTTAT 47564 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.7 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAGAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGT # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCCTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTAATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATTTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7028-5877 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEPE01000002.1 Clostridioides difficile strain LC3P-056.5-6 NODE_2_length_126034_cov_18.0994, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7027 29 100.0 38 ............................. AATATTCTACTGTTTTAGTTTGTTTTCTTAGAAGAAAA 6960 29 100.0 36 ............................. TTGCGCATGAGATAAAGACATCTAAAGATAAGATAC 6895 29 100.0 36 ............................. AACATAATTATAACATAGGAGTTCATTAAATGAAAA 6830 29 100.0 38 ............................. TGTGTTGCTGTCATACGAGGTAACATTTGTCTGTTTTC 6763 29 100.0 37 ............................. TAGACTACTTTACAAATAAACTTAACGAGTACAATGA 6697 29 100.0 38 ............................. TGTGTTGCTGTCATACGAGGTAACATTTGTCTGTTTTC 6630 29 100.0 37 ............................. TAGACTACTTTACAAATAAACTTAACGAGTACAATGA 6564 29 100.0 36 ............................. ACAACAGGAACATCAACTGGTGGGTCTATTGGAGGG 6499 29 100.0 37 ............................. AGCAAGATACTGCAAATATTTATATACACCAAACATT 6433 29 100.0 36 ............................. GAACATTTAAAACATCAAATACACGTTTAAAATCCC 6368 29 100.0 37 ............................. CTAATAAGACTAATAACATCTGAATTATTTATATTTA 6302 29 100.0 38 ............................. TTGAAATTACTTACATATAGGTCTATTTAATTAATCAT 6235 29 100.0 37 ............................. TTGAAACTTACTACACCAGTTTTAGTAGTTCCAGCTA 6169 29 100.0 37 ............................. ACAGCAGTAGCAACACCCTCTTCAGCAGCAAAACAAG 6103 29 100.0 36 ............................. AAAGTAAATCCTAGAGCATAACCAATTTTCGTAGGC 6038 29 100.0 38 ............................. TAAACTGTTGGTTCTACTGGTGTTTCTTCTTTATTTAA 5971 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 5905 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 98.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTATTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAATATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //