Array 1 2519-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFY01000014.1 Thermotoga sp. Ku-13t contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================== ================== 2518 36 100.0 41 .................................... TTTTTCCACATCGATGGGCATTAGGATCACCAACCTTTTTT 2441 36 100.0 39 .................................... CTTAGCAGGTCTGCCATCAGCTGTTCGGGCACAAGAATT 2366 36 100.0 39 .................................... GTCTGATAGCGAGCACAGATACTTCCTCAGTTCCTCCAT 2291 36 100.0 39 .................................... AAGCTCACCGATTCCGCGCTCACCTGATGCGCTTTCAAA 2216 36 100.0 39 .................................... CAAATCATAAATTAATCTTGCTAACGCAAGCTCTTGCGC 2141 36 100.0 40 .................................... GAAAGACATTGCACCCATCCTCGGGCTAGGGGTTGAAGGG 2065 36 100.0 74 .................................... AAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATCGCTTCAAGAATC 1955 36 100.0 41 .................................... CTTGGTTTAGAGGAGCTCATCAGGCCCGTCGCGCTCCTCCG 1878 36 100.0 39 .................................... CAGGCATCTGATCCAACAACTCTTTCAAAGTGAACTTGA 1803 36 100.0 39 .................................... TTGAGATAAAATTGTCTGCGTGCTTCCTGGAAATTCGAA 1728 36 100.0 37 .................................... TTTACGTGATGGGTACAAGAAGAGGTACTTAACCTGT 1655 36 100.0 35 .................................... AATGCAAGCTCTTGCGGTCCATAGTTGATTTTGAT 1584 36 100.0 41 .................................... TATTGAATGGGGGATGAGGGTGCTACTTCGTTATCTCTCCC 1507 36 100.0 37 .................................... AATGCATTTAACACTGGCAGTGAGGTCGAAATCAGGA 1434 36 100.0 40 .................................... CATATTGTGCCGTGATGATCTCGGGGGGCAAAATGTATTT 1358 36 100.0 39 .................................... AATTTCCTTAACTACCATCGCTGGGAAAGAAATTGAAAC 1283 36 100.0 37 .................................... AACTAGGGTTGTTAGCCAGGGAGGTGAGGGCATGAGG 1210 36 100.0 39 .................................... TGCTCCGCGTTCCAGGATCCACTTATCCACGTAGATAAG 1135 36 100.0 41 .................................... ATTGTGAGCGCGCCGGTGCCTTGAAATTCGACTGAGAAAGT 1058 36 100.0 40 .................................... AATAGGTGTGGGGCGGTCAGGATCGGTAAAAAGTCAGAAA 982 36 100.0 40 .................................... AATCCAAGGTGGTCTTCTGTTTTGTTCGGAGCAAATACCA 906 36 100.0 39 .................................... CTTCGATGGGTTCGAGGGGGAGCGCCTCCTTAGGCTCAT 831 36 100.0 36 .................................... GTTTTCGAATGAGGATGTGATAACATGGGTCCTGTT 759 36 100.0 38 .................................... GGTGGAGTGCTTGCACCTAACGGGAAGATCTATTGTGT 685 36 100.0 40 .................................... CACAAAAGAGGAATTGCTTTGGAGACGGATGGTAAGGTAT 609 36 100.0 36 .................................... CGCCATAAATGATCCCTTTCGCGACTGCGCCACCAG 537 36 100.0 41 .................................... GTTTGCGAGGAAGTTCAATGCTTCTTCGGACGGATGGAAGT 460 36 100.0 41 .................................... ATGATGGCTTTTCCTGAGGCACTGAACGAACCTGTTTTTTC 383 36 100.0 37 .................................... GAAAAGATGGATCGCGAACCGCCTTGGAGTAAGGAAA 310 36 100.0 35 .................................... AAGCTACGCTTACAATCGCGGCACGCTTTCAGAAA 239 36 100.0 37 .................................... GGATTAAGGCGAGGCTGGTACTCCGTTCGAGCGAAAC 166 36 100.0 41 .................................... GTTTGCGAGGAAGTTCAATGCTTCTTCGGACGGATGGAAGT 89 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================== ================== 33 36 100.0 40 GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Left flank : GAAAAAGATTGGGAAAAGTACGTGATAGGTACGCTGAGAAACGATCCTAATTTTGAGATTAAGAGGGTGATCTGAGCCACGCAGACCTTCTTTTTCTGAATGACCGCCGTCCTTTGCGTGCGGTTGTTAAGGCTTTCCAGAAGCTCAATCGAAAGACACCGGTTTCTGATAGCCGTATTCTATACAATGTATTAGAAAGAATGTCTGCGAAAAAGTACTTCTGGAATCATCATAGGAAAATAATTCTTATCGCCCGG # Right flank : GATGATGGCTTTTCCTGAGGCACTGAACGAACCTGTTTTTTCGCCTCCAAACCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 28-3628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFY01000006.1 Thermotoga sp. Ku-13t contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 28 36 100.0 38 .................................... TTGTATATTGGCTGGGAAGCCGAAAAGGCATAACTCAT 102 36 100.0 40 .................................... ATTGCGAAGGCTGCCGCGGCTGTTGGAGCATTCCTATCGC 178 36 100.0 38 .................................... GATTTCCGCCCACAACGTGTCCCGTGCGTTTGTTCCAT 252 36 100.0 38 .................................... TCAGCGACGAATTTCCTACAGCAGGCAAGAAAAGCTCA 326 36 100.0 38 .................................... TTTATGTGGCACTCAAGCCGATTTCTGTATTCCTCCCT 400 36 100.0 37 .................................... AGCGTTTGTCCTCGATGCCTTCGGATATGATCTGATT 473 36 100.0 39 .................................... TGGAACAGGCGCACAGGGCATGTTGTGGGTGGGAATCAG 548 36 100.0 34 .................................... AAAAATTCATCGTGCTTTCCATCGCTTCCTTCAG 618 36 100.0 40 .................................... ATAGTCTGTACGGTGCCAGTTGCGGGGTTGAATGTCAGAG 694 36 100.0 38 .................................... TTCAACGCTTGTGAACTCATTTAGCACCTTCAAAGAAA 768 36 100.0 39 .................................... CGACCATGCCGGGTTTAACCTCCTTAGTCGTTTTTATGT 843 36 100.0 39 .................................... CTCCCCTGCCGGCTCCGGGGAGGCTTACCTGATCTTCCA 918 36 100.0 38 .................................... AGAGTCGCGTCTTTTTGCCCGCCAATGGTTATATATTC 992 36 100.0 38 .................................... AATGCATTTAACATTGGCAGAGAGGTCGAAATCAAGAT 1066 36 100.0 40 .................................... TTCAATTCTACAACGACGAACAAATTCAGCGGCGTTGTGA 1142 36 100.0 38 .................................... AAATACTCAATTCCCTCGAACCCGAGGGGTGTTTTGGT 1216 36 100.0 36 .................................... ACATTCAAATCAAAGCAATGAGCGGCGGAAAGCAAT 1288 36 100.0 39 .................................... TTTTGCAGACAAACCTATTTTGCGGAAAAATTCCCCCGC 1363 36 100.0 36 .................................... TTGTAGTTGCGACCATAGCAACTATAGCTGTACGCA 1435 36 100.0 40 .................................... AATGTCCGAATCCATGAGCAAATCTTCGCCTATCTTAGTT 1511 36 100.0 35 .................................... TATTAGTTTCATCGCAGAAAAACGCCGTATTGATG 1582 36 100.0 40 .................................... ACAACCGTGCCTGTCCAAGTAACCTCAGGCGCGTTCTGGG 1658 36 100.0 38 .................................... ATCGTGACCTTCAAAGCTACCATTCGCAGTCTTGACAA 1732 36 100.0 39 .................................... TGTATGAGCTAAAATTGTTAGGCGCTTCCTCGTCGTACC 1807 36 100.0 40 .................................... TGCGCTAATTTTTCTACGACCGGGGTTAGCTTTGTTAGTG 1883 36 100.0 38 .................................... TGTAAAACTTCGGGCGCCTGTTGCGAATCGCTTCAAGA 1957 36 100.0 41 .................................... GCCTTCTATCCTGTTCAAGCTTGCAGGATCAAGGAAATCAT 2034 36 100.0 37 .................................... ACTTTTATGAAGGTCGTTTCCAGCTGTGCTTTCAAAA 2107 36 100.0 41 .................................... GCTGTGGATAGGGCTCAGTAGAGAGGACCCTTCGCTTACCC 2184 36 100.0 40 .................................... GGTTTCTCGGGCTTTGGGGAAATGGGCGTGTCTGAGGAAT 2260 36 100.0 38 .................................... CAACAATCCTACTGCGGTACTGAAGGTGGGAATTGAGG 2334 36 100.0 38 .................................... TTGTGGTGCTGAAGGCAAAGCGTCTTAGAGGAAGCTAA 2408 36 100.0 40 .................................... GCGATTGTGAGCGCGAACGACCTAACCGTCGAGGAATATC 2484 36 100.0 40 .................................... AGGATGAGAACTGCTGCGCCCATCTCTGTGATCTTGCGGA 2560 36 100.0 39 .................................... TCGAGTTTGCCCCAGCCCACGCTCAGGCCGCTGATACTC 2635 36 100.0 39 .................................... ACTCTACGCCCCCGGCGGAGTCGGGAAATCCTTAATAGC 2710 36 100.0 41 .................................... TATTGGCTGGGAAGCCGAAAAGGCATAACTCATTTTAAATT 2787 36 100.0 38 .................................... AGTTGCTGGTAGCGGGAGCCGAGGTGCGTGTCTGAGAC 2861 36 100.0 38 .................................... ATGTCTGGGCGTCGCCGAACACCATCACTCCATGTAAA 2935 36 100.0 37 .................................... AATTCTTCCATCACTAGTGCTTTCGCCCTGAGTAAGA 3008 36 100.0 35 .................................... TTATATACTCAGGATCCAAAAACGGATTATCTTTG 3079 36 100.0 38 .................................... ATAAGTTAGCGAGGTGAACGATGTGCCGAGACGCTCAA 3153 36 100.0 38 .................................... GAGCTTGCGGACGAGCCTCCATACAAGCATGGTATAAT 3227 36 100.0 39 .................................... TTATCAGGAAGTCCGCAAGATCACAGAGATGGGCGCAAC 3302 36 100.0 38 .................................... CATCTTTTCCTACGCAAAGTTCAAGAAAGTGGAGAACA 3376 36 100.0 40 .................................... AAAGGTACCTGTGCGCACTGGAGCGTTGAGGAATTCTATC 3452 36 100.0 105 .................................... ACCCTCTAGAGAGGCATTGTCGAGGGCATGGGCAGAAGAGTCCTTATCACCCTGTGAGGAATTTGAAAGGTGAGAAGTGGTGCGCGCACGTGTTGTGAAAACTGA 3593 36 69.4 0 CT....GG....G....A...A.T.AA.....G... | ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 48 36 99.4 40 GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Left flank : TAACGGGACAGGCGAGGCAACCATTACG # Right flank : G # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 2653-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFY01000005.1 Thermotoga sp. Ku-13t contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 2652 36 100.0 41 .................................... ATGATGGCTTTTCCTGAGGCACTGAACGAACCTGTTTTTTC 2575 36 100.0 37 .................................... GAAAAGATGGATCGCGAACCGCCTTGGAGTAAGGAAA 2502 36 100.0 36 .................................... AAGCTTCAACCACTATCCAACAACTGCCCGATCTAA 2430 36 100.0 37 .................................... AAGCTTCAATCACTATCCATCTGCCCGATCTAACTTC 2357 36 100.0 37 .................................... TTATAAACTCGTTCCTTTAGCTTTTCCTTCAGTAACA 2284 36 100.0 39 .................................... CAAAGTTTCCTAGCCCGCCGTTCGTGGCGGTTCTCACAG 2209 36 100.0 37 .................................... CGGTTAGTTGGGATAGGAAATGTGGATCTTTGGAAGG 2136 36 100.0 37 .................................... GATTAATGCAAATTTCTCAGCCTGCGTTAGACACAAT 2063 36 100.0 39 .................................... CAATTGCTCGAAAACCTAGCAGAACAGGACAAGACATAT 1988 36 100.0 38 .................................... GCTTAGAGAGTAATTTGTCAATCTTAGGCAAGCGCTTT 1914 36 100.0 37 .................................... CCACCGTCACGTGACCGTCCCCCTCTCGAAGAATTCC 1841 36 100.0 40 .................................... ATTGAAGACATCGAGGAAAAGAAACCCCCTTTCTATTTAC 1765 35 69.4 21 ...................NN.-.T.CCT.C.G.TA TGATCTGGTTGAAGCGAATAT Deletion [1710] 1709 36 100.0 38 .................................... CGCTTGTACCTGAACCGTCGTGGCAACTGGCTCGCAAG 1635 36 100.0 35 .................................... CGTTAAGATGTCGCTGATTTCGTCCGAAAGTACGT 1564 36 100.0 40 .................................... TCACCTCCGTCTGGCGTCGCTTCCACGATCGCTTGTCCGA 1488 36 100.0 36 .................................... GTACGAAGCATTGGGCAAAGCGGTTGAAAAAGGCGA 1416 36 100.0 38 .................................... TGGGCTTCTGGTGCGGGATTGCTTTCAGGACTAAACAG 1342 36 100.0 42 .................................... AGGACTGCGTCGACGTGCGCTCTTTTCTTTGCCATCTTTAAT 1264 36 100.0 38 .................................... GGTGGAGTACTTGCACCTAACGGGAAGATCTATTGTGT 1190 36 100.0 36 .................................... TATCTCCTCTTCCTCGAAATCTGCCTCTGTTTTAGG 1118 36 100.0 35 .................................... ATATAGCGCGCAGTTCGTTTGCGCGCCTCGGCGGA 1047 36 100.0 36 .................................... GCGTATTCCATTCTCGTGCTGCGTCGTTCATATCGA 975 36 100.0 40 .................................... CTGATACATCCAAGGGTTCGCGTTCCATGCGCTTTTTTCG 899 36 100.0 35 .................................... ATAGTGATTTTCCCAACAGCACTCCAGAGGATCGT 828 36 100.0 37 .................................... GAGTAACACTGGGACTCGCTCAGGAAGGAGAGGATAG 755 36 100.0 40 .................................... GTTTCGGGGATAGGCATAATTTCGGACATATTTCCCCCTC 679 36 100.0 36 .................................... CAACAATCCTACTGCGGTACTGAAGGTGGGAATTGA 607 36 100.0 43 .................................... TAAGTCGGGCGCAGAAAAACTAACTCGGCTCTTTAATCTCAGG 528 36 100.0 35 .................................... CTTGTAGTCTTCGGAGAAGGCGATTGAGGTAATCA 457 36 100.0 37 .................................... TGAGCCTCGAAACACGCGGCCTGGAAGCATTCCACGT 384 36 100.0 36 .................................... TGAGAATGGGGAATTAAAGTGTCACAAAAGGTATCG 312 36 100.0 38 .................................... AAAAGACGCGCGGTTAACAAGCCGGAAGGATCTTCATA 238 36 100.0 105 .................................... ACCCTCTAGAGAGGCATTGTCGAGGGCATGGGCAGAAGAGTCCTTATCACCCTGTGAGGAATTTGAAAGGTGAGAAGTGGTGCGCGCACGTGTTGTGAAAACTGA 97 36 69.4 0 CT....GG....G....A...A.T.AA.....G... | ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 35 36 98.3 39 GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Left flank : CCGTAGAACGGCATTGAAAGGTTTGCGAGGAAGTTCAATGCTTCTTCGGACGGATGGAAG # Right flank : GGAGCTCTGTTGGATCCTTCAATTCGATCGACAGCTTGATGAGGATAATCGCCCCTCTTGCA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [11-12] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 285480-285317 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFY01000010.1 Thermotoga sp. Ku-13t contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 285479 30 100.0 37 .............................. AGTGTACCTGGTGAACTGGCACCGTATCTGTTTGTTC 285412 30 100.0 36 .............................. GTTCAATCCGCTTGTGAACCCGTACTTGTCCAGGTT 285346 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : CGGAAACTTCATAGCGACCTGCTTCAGTTCTTCCTCGAAACCGTACGATATGACGAATATGACGTCCGCCCACTGTGCGGCTGTGACCAGACTCGGATAGTACAGGGAAGGATCGAAGTTGCATTCGATGACCCTCGTCTGAACCTTGAAGTCCTGTTCAAGTTGCTTGATGCCTGCGTATCCAGAATCGTAGAAGGATTGATCCCCGAGCGAACCGTTAATGACGTAAGCAACGCACACAGGTTTGGCGAACAAAACAAGTGACAGAAGAACCATCGCCAGCAGTGCAAACTTTTTCATCTTGGCACCTCCCAACGGGATTCTATCACGCAAGATTCACCAAGTGAGCGCATGAAGCGAGGACAAGCTATCATACGAGTCGAGGGGATCCCACTTCACAACTTTTCTCAGGTTGAGACCAACCGAGGGAAATCAAATCCACTCTCATGGGGTGAAGTCTCCATCCCTAGGTGGAAGCAGGACGTTCAAGGCAATATTCT # Right flank : CCATACGGCTCACTTAGATTGTACCACATCGGAATGGGGGTGCAATCGTCTAAGTGTTTGTTCAGAGAACAGCGGATTGCACGAGGATACGCTCGAATTCAGCATTTTCTTTCATCCACGATCTTTTGGAAACCCCCCAGGTTTTTTCGGCTATCGGAGGTTTCCCCAAAAAGTGCCGTTTTTCGAGGGGGTGTGTAACATTAAAGGATGTCGCTTTGTGATTTTTCACAAAGTGGATCTAACGGCTCTAAAATGAGATTAACGCACAATGATACAATCTCATGCTAAGCTTTTTTCACAATGATTAGTCTCACCTAACTAAGAGTGAGGCGTTCACGCGTTTCAGATATTTGTTTTTCAAGATATGGGGTTTCCCCCCCCAGAATATTTCTTCACTATTGCGGAATGATTAAGCGTGCTTTGTGCGGAATCGAATGGCATCTGAGAGTGGTGTGTTTGCGTTTCGTCCTTCTGAAGCCGGAGATCTATCTGACAAGTGA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 76316-76084 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFY01000009.1 Thermotoga sp. Ku-13t contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 76315 30 80.0 37 .C...T....A...G...C...G....... ACGCATTCTGGGATTGTGCCACCAACGGCGTCACCCT 76248 30 100.0 38 .............................. GGTAGTGAATTTGACATTTTGTGGGGGTGTGAAGTCTG 76180 30 96.7 37 ........T..................... GATGATGTGGGTAAAAGTACACTTCAAGTCAATAGGA 76113 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 94.2 38 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : AATGCGATCACCAGATAGATGGTGAAGAAAACCAGAAAACCTTCCACACATATGCCCACCTTTCTATGGATCAGTATGAAAGGATTTTAGAAAGAATCCGCCATCGATGTTCGATCCTTCCGCATCGTGGGGAGGCGCTCGCTTCTTTCGCGATCTTTCGGAAATATCAGGCACTCCCGGCCAGGGTGAAACCCCTCACAACATTGAGGCCTGGTTTCTCACCGAATGGTCTGCGAGCTTCATCTGGACCACATATCAGCTTCGCATCTTTTCCGACGTTCGACTCAAACACAGCGAGGCTGTTTCGGTCGGATCTTTTCTCATACCGCAGCGTGCAATCGAAACACAAATCATGCGGGCAGGAAACTGACGAGCGGACACTTTCGCAGCAGCGGGAATCGATCAAAACTCTTTGTCTTGATGGGTAACCCCACGGCATCTGTGTGGACCTCAACACCTCGAAGTTCATCAAATGCGAGATGGCACGAACTGAAAGGGGC # Right flank : CCATTACGATTCAATTAGATTATACCACATCAAAGTGGGGGTGCAATCGTCTAAGTGTATGTCCGGAGGGTGGTAAATCGTGCGAGAAGTCACTTTGAGTGCGCGTTTGCTCGCTTTGATGGGTCTGGGGGAAACCCCCGGGGGTTTTTCGGCTATCGGAGGTTTGGTCGAAAAGTGCCGTTTTTCATGGGTTGCTGTAACATTTGAGCGTGCCACTTTGTGATTTTTCACAAAGTTGATGAAAGTGCTATTGAAATTGATCATCTCACGATTCTTCATTGTGTTTACTAGATTTTTTCACAATGATTAGTCGCATCTAACTGAAAGTGATATATTCCTGGAATGTAGATATTTGGTTTTCGAGATCTGGGGGTTTCCCCTCTAAATATGTCTTCACTATTACAGAAAGATTAATCCGAGAAAGTTCAGCCAGCGAAGATGTTTTTCAGAATATCATGGTTTCTTCTGACCTCTTGAAACCGGTCTCTTCGTCGTACCAG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 118740-121288 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFY01000009.1 Thermotoga sp. Ku-13t contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 118740 36 100.0 37 .................................... CGTAAAACTTCGGGCGCCTGTTGCGAATCGCTTCAAG 118813 36 100.0 41 .................................... ATCGAGGATATTTGTGGTAGTAGGCTAGGGCAGATTACAGA 118890 36 100.0 37 .................................... TCTTCGTACGGCATCTGATTGAAGCGATGAAACTCCG 118963 36 100.0 38 .................................... ATTCGATTTTACCAGGAAATCCGCAAGATCACAGAGAT 119037 36 100.0 37 .................................... GAAAATCCTCCTGCGAAAACTCTGTTGCCTCTTCCAT 119110 36 100.0 39 .................................... GGGAATTTGATAGGAATCGAGGAGAGAGAGGACAAGACG 119185 36 100.0 35 .................................... TTCGCGACTGTAGGTGCTTTCATGCCTTATGCAAG 119256 36 100.0 39 .................................... TGGAACCAAGAAACGCCCCGACGGAAGGTGGATTACCGA 119331 36 100.0 40 .................................... ATTTCCTCGTCCTTGTCATAAATTTGCACAAAAAGTTCAG 119407 36 100.0 36 .................................... TCCAATTAGTTTCGCCCGTGATGAGGCGTATTAAGG 119479 36 100.0 36 .................................... GAGGATCTTAGTTGCTAAGCTGTCTGCTGTTTGCTT 119551 36 100.0 38 .................................... TCGTATCCCGTCCGGCCGAGTACGGGCACAGGCACGGT 119625 36 100.0 39 .................................... GAACCTGGAACCCGTTTTCCGCGCCTTATAAGCCAAAAT 119700 36 100.0 40 .................................... CAATTGCTCGAAAACCTAGCAGAACAAGACAAGACATATT 119776 36 100.0 40 .................................... AAAGCACTCAGGAGCTTGAGGAGCCGCGGGAAGACGAAGA 119852 36 100.0 39 .................................... CAAGCTGAAGGTTAACGGGACAGGCGAGGCAACCATTAC 119927 36 100.0 38 .................................... TTGTATATTGGCTGGGAAGCCGAAAAGGCATAACTCAT 120001 36 100.0 40 .................................... ATTGCGAAGGCTGCCGCGGCTGTTGGAGCATTCCTATCGC 120077 36 100.0 38 .................................... GATTTCCGCCCACAACGTGTCCCGTGCGTTTGTTCCAT 120151 36 100.0 41 .................................... TCAGCAAGAACGGTGAATCTGAATGATCCGAATTATTACGA 120228 36 100.0 37 .................................... ATGCTTGCAGATGTCCAGCCCGACTTTTTGCCCTCCG 120301 36 100.0 35 .................................... GTATAGCACGTTGAATGCATTTGCTACGATGCTGA 120372 36 100.0 39 .................................... ATGTATCTCTGCACCTCCTCAGGTGTCCAGGGTTGCTCG 120447 36 100.0 39 .................................... GGGGACGGTTGGGTAGTACTCCGCCCCCTCACTGTTCGT 120522 36 100.0 37 .................................... ACAAGTGGGTAGGCCCATCGGACCGGAGGACGACAAA 120595 36 100.0 37 .................................... TCTACGGAAACTTGCTGGTCTTCTTGTGACACAGGAG 120668 36 100.0 40 .................................... TAGGATTAGCTCCGGACACTTGTTGCGCAGGTAGTTTTCT 120744 36 100.0 37 .................................... AACGAAACATTATTTTGATTCAGTCGACAGCAGCTCG 120817 36 100.0 36 .................................... AGTTCTTTTGCCTCAGGGTCAATCTCCAGCACTTGT 120889 36 100.0 38 .................................... ACTGATAGGTTGGAAGGAGACGCTGGAAATGGCCGAGA 120963 36 100.0 39 .................................... CGAAATAGAGCTTGTAAATTTCCGCACTCAGGTTCTCTA 121038 36 100.0 38 .................................... AGGGAGACTGCGATGATTTTGCACTTGCTGCATGCCGG 121112 36 100.0 105 .................................... ACCCTCTAGAGAGGCATTGTCGAGGGCATGGGCAGAAGAGTCCTTATCACCCTGTGAGGAATTTGAAAGGTGAGAAGTGGTGCGCGCACGTGTTGTGAAAACTGA 121253 36 69.4 0 CT....GG....G....A...A.T.AA.....G... | ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 34 36 99.1 40 GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Left flank : AGCACTTACGTTCCTTTCACGGTGACAAAATGAACGATCACAGAGAGGCCTACATAGTTACGTACGACGTCTCACAGGACAAACTGCGAAACAAGGTTGAGAAGATCATTAAAGAATACGGAGTGCGCGTGCAGTACAGTTGTTTCTACTGTCCTGTTGAAAAGAGGGTTCTGCTGCAAGTTTTGATGAGGTTAGAGAAGATCATAGACAAAAAGACAGATTCTGTGATTGCAGTTCCACTCGAAAAAGATTGGGAAAAGTACGTGATAGGTACGCTGAGAAACGATCCTAATTTTGAGATTAAGAGGGTGATCTGAGCCACGCAGACCTTCTTTTTCTGAATGACCGCCGTCCTTTGCGTGCGGTTGTTAAGGCTTTCCAGAAGCTCAATCGAAAGACACCGGTTTCTGATAGCCGTATTCTATACAATGTATTAGAAAGAATGTCTGCGAAAAAGTACTTCTGGAATCATCATAGGAAAATAATTCTTATCGCCCGGT # Right flank : GGAGCTCTGTTGGATCCTTCAATTCGATCGACAGCTTGATGAGGATAATCGCCCCTCTTGCAGGCGGTGCGATAATCCAGTTCTTAGGCCCAGCTTTTAAGGGGACCTTCGAGAGTGCGGCAATGATGATTTCTTTTTTGATCTTGATCTTTGCTTCTTCGCTGGCACAACCCGCGTTTCACAAAAATCCCTCTGGAAACCAGCCATGACTACGATGTACCGGGAGAAAGAACCAAGGGTAGGGAGTGTCAGCCTCTCACTCTGTCCAGATCGGCGCGCATGAAGAGGAGTAGATAATAAACCGGCTCGTCGCGACCTTCAATGTAGATCCAGCGGGACATCTTCAAAAACTCTTCGACATCGATCAGATTCTGCACGTGTTTTTCTGCTTCCTGCTGGGTACAGGGTTCTATGATCTGTTCGATTCTGGAAATCTTTGCATCCTTCAAACTGTTGAAGAACAGTTTGGCAAGGGACTTTGTGAGATCTTCGTTTTCAAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAAAACCAAATTCCGTAGAACGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //