Array 1 380279-379641 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570385.1 Streptomyces sp. Mg1 supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 380278 29 93.1 32 ..T..............A........... GCTCGGGTGACTCGGACGCGCAGACCGTGATA 380217 29 100.0 32 ............................. GGAGGCTCCCCCGCTTGTGCGTGGTCGACCGT 380156 29 100.0 32 ............................. CCGGCCGAGGTACTCCTTCTCGAACGGATGCT 380095 29 100.0 32 ............................. CATTCCTCACCGTGCCCGAGGGGAGTGATGCC 380034 29 100.0 32 ............................. AGTGTTCGTGCAGGTCGGGACGGGGAACTGGA 379973 29 96.6 32 .................A........... AACCTGTTCACCCGGCACAAGGATCTCTGGCG 379912 29 100.0 32 ............................. GTCGGCACCCCCGCCGAACCCCTGAAGTCCGC 379851 29 96.6 32 .....................A....... TGGGAGATCACCCCGGACCGCGAGCTGACGTA 379790 29 96.6 32 ....................A........ CCGGTCAGGCGGACGGCGAGGACGCGGGCGAG 379729 29 100.0 31 ............................. ATCCTCGGGGTGCGCGGGGGGTGCGGCAGGG 379669 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Left flank : TCCTGTTCTCGTACGC # Right flank : CAACCCGCGGATCTCCTGCGGCATGACCGGGAGCAGCACCTCAACCCTCTGAAACGATCTCAGGCCCGTTCTCGGGCACGGGCCTCTTACTGATCGTTTCAAGGAGACCTGCAGATGCGAGACGGCAGCCCCGTAGGCATCCGGCAGGTCGATCCTGGCCACGGCCTCCAGCGAGAAGGCCGGCGCTCCCGTCCGGGCCGCCCTGCCACAGCAGCCGGACCTTGCGGGCCCGGTTGAGGCCCGAGCGGTGGAAAGGATTCATGCCGCCGTCGCCGATCGGTGCGCACCAGCGAAACAAGACCTGGTGCAGCGGAGAGTGGTTCAGCGCGTCGGCGAATGCCTGCACGCCGCGCTCCGACAGCGGGCGCCAGGTAGCCGATGCTTCCACCGGAACGAACATCCCCGTACGCACGAGGAAGTCGGCGCTCGGCTTCATGGGGTCGTCAGCGGGCAGGTCGGCCGGCGGCAACCGCAGTCCGGCAGCCACAGCCTGGGGCGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17-777 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 ............................. CGCGGTCGCGTGCCGCAGGCCCGGCCCGGTGT 78 29 96.6 32 ............................A CAGCCGAACACGTTCGCTGAGGTCAGCGAGAA 139 29 100.0 33 ............................. GCGTGGGCACACCTTCTGTGGCTGAGGCCCAAG 201 29 100.0 32 ............................. ATGACCCCCTTCGAGGTCCTGGGCCGGATCGG 262 29 100.0 32 ............................. CAGCGGCACGACGCCCGAACCGCTGCCGACCG 323 29 100.0 31 ............................. CCAACACGGTGAAGGCGCCGGGCATGCCTGG 383 29 100.0 32 ............................. ATCAGAGGGTTCGCGAACGCGCCGAAGCGGAC 444 29 100.0 32 ............................. TGCCCGTAGTCCTTGTCCAGTCGCCAGGTCAG 505 29 96.6 32 T............................ GCCCGCTACCAGCACTCCTACGAGGAGCTGCC 566 29 100.0 32 ............................. TGTTGTCCAGTATCGGCCGTCGGGCAGGTCTG 627 29 96.6 32 ................A............ CACACGGCCCCGCCAAGGTGGTCGCCGGTGGC 688 29 96.6 32 ...T......................... GTCGGCGTTACCCGGGTCAGGGCCGACCTCAA 749 29 93.1 0 ...........G.............A... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : AGGACCGCATCGTCGAC # Right flank : CTGCCGACCGTTCTTGATCTTGCTCCGGGAAGGGGTCGTTTTGTGACAGTCGCCCAGCGTTTAGCCATAGCCCCTGCTCGGTCCAAGAGGACACCGCTGTCGTCCTTCGCCCGCTCATGCCGGGACGCCCTGCGCTGTCCCGGCAGCCCGCAGAGGAAGTCAGGTGACCAGCAGCGGATCAGCGCGCAAAGGTGCTCCGGCGACGGCGAATGCTGGCATCAGTGACGTGCGGGGCGGTGACGGTGCAGTCCTTCGGAACGGTTCGGATGGCCAGGGTCACACCGCTGGTGATCTGACAGCGGCGGCCGATGGTGACGCCGGGACCGATGCTGATGTTGTTGCCGGTCTGGGTGTCGTCGCCGATGACGGCCCCGAACTGTGTAGTCCCGCACCGGTAGAGGCCGGTCATAGTGCGGATGATCACTTCCCGATCGGGTGTACGCATGTCCGTGGTCATGTTGATCGCGGCCACGGTGACGCCGGCGGAGAGGTGGGCGCGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6484-7611 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6484 29 100.0 32 ............................. CTGCAGAAGGGCTGGACCATGACAACGCTCGA 6545 29 100.0 32 ............................. CAGGCGGCCCAGCCGGGAGTCGTTGCGGTGTC 6606 29 100.0 32 ............................. CGCAGGTCAGAGGTCGCGCGCTGTCCGCTCCG 6667 29 100.0 32 ............................. GTCCTCGCCCTGAGTGGAACGCCAGGCCTGGG 6728 29 100.0 33 ............................. GTCCATGACTTCGGTCTGCACGCCGGCCGGGAA 6790 29 100.0 32 ............................. GCCCGAGCCCGTCGAACTCGCCACGGTCGTAA 6851 29 100.0 32 ............................. GAGATGCTCCGGGACCTGAGCCGGTGACCGCG 6912 29 100.0 32 ............................. CGCCTCATCTGGTGCCTCAGAGGCGGCGAGCA 6973 29 100.0 32 ............................. TCGACGGCCAGCACCGCGTACTCCTCCGCTGC 7034 29 100.0 32 ............................. TTCTCCAGCAGCACGGCAGCCTCCTATCCGGT 7095 29 100.0 32 ............................. CTGGTGCTACAGGGCTGGTCACCGCAGCGCGC 7156 29 100.0 32 ............................. TGCGGCCTGAGGGCGACGGCGACGACGGCCAG 7217 29 100.0 32 ............................. GACGTCGTCGCTCACCACGGCTCACCGAAGCA 7278 29 100.0 32 ............................. CTGGTCTTCGTGGCGCGCTGCCGGGGCCTGTG 7339 29 100.0 32 ............................. ACCGTGCGGCTGCTGGCGGAGATCACCACCTG 7400 29 100.0 32 ............................. TCGCATACGCCGGCGGTGACGCGGAATTCGGC 7461 29 100.0 31 ............................. TACCTGCGCTGGGCGCCGTCCACCTGGACAC 7521 29 96.6 32 ................T............ AGCTCCTCCGTACCGTCGGACGTGCCGGCAGG 7582 29 100.0 0 ............................. | G [7599] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TCATGTCGTGGTGGGCCGGGTTCTTCGAGGGCGTGCGGACAGTGTGCCCGCCGCGCCACCCCATGCGGTGGCGCACGGTGTGGCGCATGACTCGACTAGGCCGGCCGCCCGTGATCTAGCACCTCTACTGCTGCTCGCGCACGGTGCCCGGTACGCTTCAGCGCTCCGGGTAACGTCCGGGTTGGGCCGCGCCGAGCTACTGAAGTGCGGCGATACGCAGGCATGGGGCGCGCCCTTCTCGCGTACAACCCGACAACGAACAGGGCTTCGCCTTCGAGACCACGACGACAAGTGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTAGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCATCGAAGCGCCGCCGCTTCGGAAGCAGGTAGATCCAATTGATACCCTATGTCGGAATCTCGGGAAGTGGTTCAAAGCGAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : CGCGGCCTCCAGGTAGTCGTGCTGGTTAAGCGCCAGATGCGAGGTGTTGCGGGGTCTGCACCGCAGGGTCAGCGGTTGCCGGTCCAGACAATGCGTTCCGCGAACCCACCCCGCTGCTCGGCCTTCGCTGCCCGGATCTTCTCCAGCTGGGTGGGATCGACGCCGAGGTCGGCCGCGAGGGCGAAGGCGACCTCGAGGACGTCCGCGAGCTCTTCGGGGGCGTCGGTCTCGTCCGCCTCCACGTACTCCGCGACTTCTTCCTCGAGCTTCGCGCCGAGGCGCTTGCGGTACTCGGCCGGATCGGCCACGTAGACCTCCGGCTCGGCTCCGTCCGCGCGGATGATCTGAGGAATCCGGTCCCGTACCAGCTTGCCGTAGAGCACGTACTTCTCCAGCACCAGATCGCCATCGGTCGGCCAGACGGCCGGGCCCTCTGTTGTTCGAGCCTAGAGATGGGGCCTCAACCGGCGCCATCAGAAACAGAAATCCCACCCGCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 13313-13462 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13313 29 100.0 32 ............................. AAGGTCAGCTTCGCTGAGGTCGGCGGCGCTAT 13374 29 100.0 31 ............................. TGCCGGCCCCGCCCCCACAGCACGCCGACAT 13434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GAAGAGATCCTCGAGGAGGCAGGACGCCTGCTCGCCGGATCCTGGCCGCCACTGGGCTGATCTCACCGGCGGCAGACGAGGATGCCGTCAAGGCAAGTGATCTCGTACGCGCTATTGCGGGCGATGTCGTCGGCGACGAGGCTGCGGGCCCGGTCGATGGTCGCGTCGAAGGGCACGTCGTGCTGGTCTGCCCAGGCGCGGTACGAGGCCATGTGGGCGATGACGGGCTCGGGGTCGCGGACCGTGATGGTCCCCGGCAGTTCGGCGACCTCCACCCGTCCGAACTCCTCGCCGAGGAAGGCCGGGGCCTTCTCCAAGGAGACTCCGAGGCGGAGCCCTTGAGCGCGCGGGGGCACGGGCCGGATATGGGCCGATGCCACTCGGGAGGCCAACAGACATCCAGTGGAATACGGCATTCAGGTGGTATGAGTCATGTGCGCGTATCTCTGGAAGTGGTTCAGAACAAGGCGCAACTGGCTTAAAGTGGCAGGTCATTGAGA # Right flank : CGCCGGCACCTCGGGAAGGTCGCCGAGATGGCGCTGTTCCCCGCCGCCCTCATCGTCAAGACGCGGAGGGTATCTGTACCGCTGAGGTCGGTCGAAAGGCAGATCGTGGATCCGACGATGGGGCCGGCAGTGCAAGTGGTGCCTGCGGTGATCGACGCCCCGGCACGGTTGACGTGAGGGGTGCCTCTCAAGCAACTAGAGGCGGAGTGTGGCGGCGTGCAGAGTGGACCGTCGGCTGTCGGTTGTGGCTATCAACGAGAACAAAGTGATCGCGGGGCAGGCCGGGCCGGTATTGCCGCGTCGGTCCACCATTAGGCGGGGCCGACCAGCGTTACGAGGAGATGCCGGTCAGCGTGTCGCACTCCACGACCACGTTCACCGTCTTTCTCAGGCATGTGTCAGGGGCACCTCAATGAGTCCCTGACCACGTATGGCAGGGTATGCCGACGACTCACGCCGGCCGGGCTCCGCGCGGGACCCCGGCCCCGCTGTTTTCCGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 14603-15364 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14603 29 100.0 32 ............................. CAGGTGGCGAAATGGGCGAGGCTGACGTCAGC 14664 29 100.0 32 ............................. TGCGCCTCGCCGCAAACCTCACGCAGCAGGAC 14725 29 100.0 32 ............................. GACGCTGATCGGGCGGCCCGGCGGCAGGAGGA 14786 29 100.0 33 ............................. CCGGGCGGTTCTGGGCTCCGCACCGATCTACGC 14848 29 100.0 32 ............................. GTCTTGACCGGCGCGGTCTTCGCCGAGATGGC 14909 29 100.0 32 ............................. GCTGCCCTCGGTCTCTGGCTGAGGTGCGGCTC 14970 29 100.0 32 ............................. TGCGGGGATGCTGCGGGCTGCAGCTGCTCGAT 15031 29 100.0 32 ............................. GCCACCTGGCCCACCTCGTGGCATGCGGCGTG 15092 29 100.0 31 ............................. GTGCCGGTCGGCGGGGCGGATGACGCCTGCG 15152 29 100.0 32 ............................. GCCCAGCTGGAGTCCATCGCTGGGAAGATGTC 15213 29 100.0 32 ............................. GGGGCCAGGTCCCCGCGCAGCTTCTCAGCGTT 15274 29 96.6 33 .G........................... TACAAGCGCCTGATAGAGGACGCGGGGCGGACC 15336 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GCTCGAGCCCGGGGAGCAGGTTGAGGTGACGACCATCGTGAACCTGAGGTCCGTCACCGTGCGCCGGACGGCAGCGTTCGCAGCAGCCTCGGCCATCCTGAGCGGCGGTGGAATGGCCGTGGTCCCGGTGCCGACCCCCATGTACCTGGCGATGACCGACCGGCGCATCTTCATCTTCCGAGCAAACCCGACGTTCGCCCGGCCGGAAGAACACCTGATGACGATCCCGCGCGCCGGTCTCGTCCGCTCGGAGATCAAGGAGCGGTTGCTCAACTCGTCCTTCATGATCTCCTCGGCTGATAGTGAGCAAGGCCTGAAAATCATCTTCCCGCTGGTAAGCCGCAAGGAGCGGCACGTCATAGCGGCCGCCCTGCCTCTGGCCAACTGACCGCCCAGGACAGGGCGGGAGCGCAGGCAGATCCGATTGATACCCTATGTCGGAATTTTGGGAAGTGGTTCAAAGTGAGCTGGATCCCGTAGAAACTCGCAGGTCACGAAGA # Right flank : CTCCTTGAGGCCCATGCCGGCCTCCTTGCAGAACCTATGGCCCGCTCCAAGGCCTTCCTGCTGTGGAAGACGCGGCAGCACGTCGCTTCGATAGGTCAAGTACGTCGGGCCGGCGGGAGACTTCGATACGGTCAGGCTTCCCGCCGGCGCACGCGCGGCACTTTCTCAGGCGGCGCTGGAACGAGGCGGCCAGTGCCTGGCAGTGGCCTGCGCGATCAGTACCGCGGCGCGCTCGACCTCGGCGGCCGTGGTGGTGCGGCCGATGCCCAGGCGCAGGGTGCGGCGGGCCTGGGTGCGGGTGAGGCCGATGGCGGTGAGGACGTGGGAGGGTTCGCCGGTTCCCGTGTTGCAGGCGGATCCGGTGGCCGCGGCGATGTCCGGGAGGCGGTCGAGGACGTCTGCGGCTTCGGCGTCCGGGAGGGTGAGGCTGAGGGAGCCGGGGATCCGGCGGCTGGGGTGCCCGTTGACGGTGGCGCCGGGGAGCGCGTCGAGGAGCCTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 22430-24233 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 22430 29 100.0 32 ............................. GGTGCGCCTTTTTCAAGCAACCTGTTCGCCTC 22491 29 100.0 32 ............................. CATGACGCCGACGATCTGCGCCTGGTGCCGGC 22552 29 100.0 39 ............................. AGCGCGGTTGGCACCACATGGTCTGGGTCACGGGGTTAG 22620 29 100.0 32 ............................. GACCTGACCTTGACTGAGATGGTCCGCGTCCA 22681 29 100.0 32 ............................. GAGCATGAGCGGTGGGCCACGTACGCGGATGT 22742 29 100.0 32 ............................. GGGAGCGGCTCCGCGCGGCGACGCGTCCGAAG 22803 29 100.0 32 ............................. CTCCTGCTCGTCGGCCCCACCGGCACCGGCAA 22864 29 100.0 32 ............................. TGTTCATCAGGCCGACGGCGCGGGCCGAGTCG 22925 29 100.0 32 ............................. CGTCACCCTCCGGATCGCCCGCACCAGCCCCG 22986 29 100.0 32 ............................. TTCACCGGCCACCGCCAGTGCGCTCGTCGTAG 23047 29 100.0 32 ............................. GTCACGGACCTCATCAAGAACCTCGAAGGCGA 23108 29 100.0 32 ............................. ATGGCGCGCACGATGCACACCAACGGTGGCTA 23169 29 100.0 32 ............................. AGATACGCGGCGACGGGCCTGGAAGTCTCCGG 23230 29 100.0 33 ............................. CGCGAAGTACACCGTAGAGATGTCCGGCGCTGA 23292 29 100.0 32 ............................. TCCCAGCGTCATCACGTCCGCAGCGACCACGG 23353 29 100.0 32 ............................. AGGCCCGGTGCAAGGCCGGGTGGACCGACGAC 23414 29 100.0 32 ............................. CTCCCCGCCCGAGACCCCAACGGCGGACCCGA 23475 29 100.0 32 ............................. CAGTCCAGCGCGAATTGCTGGATGCTGAGGTA 23536 29 100.0 32 ............................. TGTCTCCGCAGCAGACCGTTGTAGTGAGCTTC 23597 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 23658 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 23719 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 23780 29 100.0 32 ............................. TTGGAAACCCGCAGGTCAGACGCGGTTGCGGG 23841 29 100.0 31 ............................. AGCCGATTTCGGCGCCCTTCTCACTATCGGA 23901 29 100.0 31 ............................. GGCGTCATCGAGCCTCGGAGCTGGACAACGA 23961 29 96.6 32 ............................A TAGGGGTTAGTTTGGCGGTTTGGGCAGGGGCC 24022 29 100.0 32 ............................. GTCCCTGTCGATCGGCATGATCACGCCCCTGA 24083 29 100.0 32 ............................. CGGTAGAACGCCTTGCTGGCCAGGGCCATCGA 24144 29 93.1 32 ..............T.......C...... TCAACGATCTCACCGCGGAAGTCCGGGCCAAG 24205 29 93.1 0 ........T.....T.............. | ========== ====== ====== ====== ============================= ======================================= ================== 30 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : ATCCCACCCGAAGCGGCTAGCCCCGTGGCTGAGCTGCTCCTCTGGAGCCACCAAGTACTGCTCTCGGGCCGGCGGGCCCGTGTGGGGCTTCGCCCGTCCTGTCACGCGCGCCTGATCTGCAGGGACCGCAGCCGCTCGGCGATGGCGTACGAGTCCAGGCTCAGGGCGCGGATGTCGTTGACCAGGTCGCGCCACGGCTCGTACGCGGTGTCGACGAGTGTGCCCGCGGCCTCCAGATAGGCGCGCAGGATCTCCTCCTGGCGGTCCAGGAGCCATCGGTAGTCGACGAGCAGTTCCACTGGGGTCTCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGATCGCGTCGCTCTACGTCCGCCGAGCCGCCAGGGCTGGAGCAAGGCAGCGAAGCGCCGCCGTTTCGGAAGCAGGTAGATCCGATTGATACCCTATGTCGGAGTCTCGGGAAGTGGTTCAAAGTGAGCCGGATCCTGTAGAAACGCGCAGGTCACGAAGA # Right flank : CTGTAACGAGCTGAAATAACGCTCTGTCACAGATGCACCGCGCCGCCGGCACTGCCCGCGCCGCGGAGGACGCCCTCCCGCCGGTAAGCACTCCCTGATCCTGCGGCTCCTTATGGCGGAAGTCGAGCAGGCCTGAGCCTCTGCTCCGAGTCGGGCGGCTTCTGTCCAAGCCGCCGCCCTCACAGTGCCACCAGAGGCCGTTGCGCGAGCATGACCAGTCAGTCTGCGCAGACCCGCACGGGTGCGAGGCGCAGGTTCGATGGCGCCCTGGTCGAAGGCCGTCCGCGCTGCCGCGGCCGGTGTCGGAGGGGCGGGATACTCTCCGGCCATGGATCTGCCCTACAGCACCAGGCCCTCTACGGAGGAGATCATCGCAGCTGTGCCCGGACTCGCGCCGTACCCCCGGGCAGCCGTGGTGCTGGCCCCCGAGCGTGGGGAGCCGACGGTTCACCAGAGCTCGGTGGGTGGACCGTTGCTCTGGCCGGCGGATGAGCCTTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 38820-38485 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38819 29 100.0 32 ............................. ATCAGGCTGCGGAGCTTTTCGCGGGCCGATTC 38758 29 100.0 33 ............................. CGTGCTGACCTCCAGCCTGGCGACAGGATCACG 38696 29 100.0 32 ............................. GCCGCGGTCAAGGCCATCGCCCGCTCGCGTAT 38635 29 100.0 32 ............................. GCCGCGGTCAAGGCCATCGCCCGCTCGCGTAT 38574 29 100.0 32 ............................. CTGGAGAAGGCCGTCCCTCACATGGCCTGGAC 38513 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GGCCGACGCTGGCCAGACTGGCCAGCGCACTGATGGGATTGCCGGATCTCGTAGCTGGCACAGCCTGTACCGTGTCGAACATGCCGGTGACTGTGGGTTGCTGGAAGTGGAGCCGGGTGACCTGGGGCAGACCGGGAGCCCGGCTCGGCGCATTTCCGGGCTCTTTACGCAGTCACCCGCGCCCGACATTTCGCACTCGGGCCGACCGGCAGGGTCTTCCAGGGCAGGTGCCTCCAGGTCGCGCGGAACGCCGTGATCCACGGGCCGCCGCGCGGTGGCTACAGGGCGTTCGAATCGGCCGTCTGGGCCGTCTGAGTCGGTGAAGGGCGACGTGCAGCCTGAGCGCGCGGGGGCACGGGCCAGCTATGAGCTGATGCCACCGCGGAGGCCAGCAGCCATCCAGTAAAATATGGGATTTAGGTGTTATGAGTCGTATGTGCGTATCTCTAGAAGTGGTTCAGAACAAGGCGCAACTGGCATAAAGTGGCAGGTCAATAAGA # Right flank : TCTGGCTTTTCGACTTTGTGGTCCGCTGACGACTCCGAGAGACGAAGCCCGGAGGTTGCGGCACCTGACGTGCTCTGACAGACCCTGCCGTGCTACCTCCGCACGCGCCGTCGTCACCGTGCATGTCAGCCGTGCCGGGGCGTCGATCACCGCGGTCACCACTGACTGCTGGCGCCATCGTCGGATCCGCGATCTGCCTCGACTGATCTCAGCGGTACAGATACCCTGCGCGTCTGGTCCCTCTCCGAGGCGGCGCCGGGCCGATATGGAGCCGGGCTCCGTACGCGGCGCGGGCCGCTGCCGGGCAGGCTCCTCGGCGGCGGTACGGCCACGCACAGAGCGCAGTCTTGCAGCACCCTCAGGCGAGAGCTTCGCCGAGCAGCCGGTGCGGGGCGCCGCCCAGGTGCCGGTGGAGTAGCTGGGCCCGGGAGTACAACAGGCCGCCCCAATAGGTAGGCGGCAGTCGGTCGTACACGGCGGCTGCCATCTTGGCGGCCGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 47795-47522 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 47794 29 100.0 93 ............................. GCGTCTCGGCCCAACGCCCCCTGACGGATGCGCTGCTCCCCGCACCCGCGGGGATGACCCCCGCTTTCCCATGCGTCCTCCCAGGTGATGCGA 47672 29 100.0 93 ............................. GGAGTACCGGGTCAGGGCCGTATTCGGACGAGCTGCTCCCCGCACCCGCGGGGATGACCCCCCGCCCGGCAACCACCGGCCCCGGGAGGGGGA 47550 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 3 29 100.0 94 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GATTTCGGGCTCGTCGCGCACTAGAAGGTCGTGCTCCTTCTCCTCGGCGACCCTGGCGAGATGGTCCTTCAGGGACATGCCCGCGGTCTGCGGATTCCTTACCCGCTGGCTCTTCGAGATCTCGCCCGGAGTCTTCATCAGCGGACCGTCTGCCCGCGTCAGGGCGGCACTGTGGGAGGAGGTGCGGCGATACGCGGGCATGGGGCGCGCCCTTCTCGCGTACACCACCGACAATGAACAGGGCTTCGCCTTCGAGACCCACGACGACAAGTGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTTGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCATCGAAGTGCCGCCGTTTCGGAAGCAGGTAGATCCGATTGATACCCTATGCCGGAATCTCGGGAAGTGGTTCAAAGCGAGCCGGATCCTGTAGAAACACCCCATTCGCCGCATATGGGAGACCGACCCCGAGAG # Right flank : GAGCTGCGAGACGGCTGGCTCGGCACCGTCAACGCCGACGGCAAGCTCATCGGCCGGGCTCGGATTGATGACGACGTCGTCGGACTCCAGCAACTACTCGACCTGTTATCCGAGCACGGGGACAGCCTGAAAGAGCCAATACCGGTAGCGATCGAGACCTCCCGCGGCCTGTTGGTGGCCGCCTACGTGCGACTGGCAGGCCGGTCTAGGCGATCAACCCGATGGCCACGGCCCGCTACCGCGAGCGCCGCACCCTGGTGCGGACGAAGTCGGACCACCTCGACGCGATGGTGCTGGCCAACATCCTGCGCACCGACGCCGATGCCCGCCGGCTGCTGCCCATCGACAGCGAGCTCGCCCAGGCCGTCGCTGTCCTCGCCCGGGCCCAGCAAGAAGCCGTCTCGGATCGCAACCAGGCCGGCAACAAGCTCCGCTTCCATTGCAGTACTAGGGTCGATGAGCGACGGGCCCGGATCGGTTGGCGTTCCCTCCGTGAGGAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-3, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.30,-14.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 55296-54474 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55295 29 100.0 32 ............................. AAGAGGCGGGCACCCATCCCGACGAGTGAACC 55234 29 100.0 32 ............................. TCGCGCAGCGACTCGATCGGAGAGGAGCCGAC 55173 29 100.0 32 ............................. CAGCTCCTCGCGCTCGCCGCGGAGGCGGAACG 55112 29 100.0 32 ............................. CACCGGCCGGCCCCGCAGGGCAGCAAGCGGCA 55051 29 100.0 32 ............................. CACCGGCCGGCCCCGCAGGGCAGCAAGCGGCA 54990 29 100.0 32 ............................. GGCCACTCCGGCGCGAACACGGTTGGATTCGA 54929 29 100.0 32 ............................. GGCCACTCCGGCGCGAACACGGTTGGATTCGA 54868 29 100.0 32 ............................. GTGGCCGAGGGCGTGACGGTGCTCCTGGACCA 54807 29 100.0 32 ............................. CGTCACAGTGATCCGCACTGGGCGGCTCCCTT 54746 29 93.1 32 ...........G.A............... GTCACCACCATCGAGGTCGACCCCGGGGTCGC 54685 29 93.1 32 ...........G.A............... GGGCAGGCGGAGTCGGCGTCGAGGTCGAGGAG 54624 29 93.1 32 ...........G.A............... CCGAGCCACCGCGCCAACTCCCCCGCCCGCAA 54563 29 89.7 32 ........T..G.A............... GCGATCAAGGCGTTCCTCGGGTCGAGCCGGTC 54502 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.5 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TCACGAAAGCGCCACCTCGTTCCCATGGCCCGCTACAGCTCCGGCTTGGGTGCTGTCTCGCCCGCCCTGTGATCCGCAGGCTCCGCCACCAGGCATGCCGAGGGAGTCTTGCCCGCCTGGCCCCTGCGGGCGAAGCGCCCGCCGCGTCGGCCACGGGCACGCTCGACAACAGCTCCGTACACGCCGGATTCCGCACCGGGGCCGGCTGGCAGGGTCTTCCAGGACAGGTGCCTCCAGGTCGCGCGGAACGCTGTGATCCACGGGCCGCCGCGCGGTGGCTACAGGGGTTCCAATCGGCCGCCCGGGCCGTCTGAGCCAGCGAAGGGCGAGGCGGAACCCTGAGCGCGCGGGGGCACGGGCCAGCTATGAGCCGATGCCACCCCGGACGCCAGCAGCCGTCCAGCAAAATATGGGCTTTAGGCGTTATAGGTCGTATGCGCGTATCTCTGGAAGTGGTTCAGAGCAAGGTCTAACTGGCCTAAAGTGGCAGGTCATTAAGA # Right flank : GCGGCACGAGCGGTGACCGGATGGGTTTCGGCGGATCGTCCCGCAAGGTGTCCGAAAAGGGCCCCATGATCGTTCTCAGGTTTCCCTGTGTCAGCCTTAGGATTTCGATCTTCAGTTTGAGTGGATCCGGTGAGAGGACGCAGCGTGCCGGGGGAAACGTTCGTGCGCCGACTCGATCGGGTTCGTGCCGGCGCGGGTAGCGTCATCAGGCGGCGCACCGTCCGCAAGGAGGCCCGTCGCGCGCTCCGCGACATGCCGGTGCCCCGTCCCTTCAGTACGCCCGCGCTGATTGCGGGCATCGAGGCTGAACGAGGGCGGCGGATCGAGCTGGTGCCCGCTCCGGACCGTCTCCTCGGCCAGAGTGACATCTGCGGCCTGTGGATCCGGCACGAGGGCCTTCACCTGGATCTGATCTTCATCCCGGAGAGCATTTCGGGGTACCACCGGCAACGGATCCTCTTCCACGAGTTGGCCCATCTGTGGTGTGACAACCCGAGCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 104475-103958 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104474 29 100.0 32 ............................. CGGAACGCGACATCCGCAGTTTACTGGACTCC 104413 29 100.0 32 ............................. GTCGACACCAGCGAGTCGAGCCCGTCGAACTG 104352 29 100.0 32 ............................. TGTGCGATCTCGTCGGGGACCGGCGGCCGGAA 104291 29 100.0 32 ............................. GTGATCCGGTACCCGTTGGTTGGGAAGTCCGG 104230 29 100.0 32 ............................. TACCGGAGCGGTACCCCCTGCGACGAGCTGAG 104169 29 100.0 32 ............................. GCGCCGTCCCCATCGCTCGCTACATGGCTGTA 104108 29 100.0 32 ............................. GGGCAGATCCAGCCCGAGCACGTGGAGATCCT 104047 29 93.1 31 ......................GC..... AACTTCGACGTCGACCCTGGCCCAAGCTGCT 103987 29 72.4 0 T.C..........CG.......G.G.T.T | G [103970] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 CTGCTCCCCGCGCATGCGGGGATGAACCC # Left flank : GAGATCAGGACTTTCAGGGGAAGGTTGCAGGCCGGGAAGGACCCGGTTTGGGGCGGGGGAGGAGGAGGTTCCGGATGATCGATTAACGCGGCTGGGTGTGCCTTCTCGCCTTGTTGAGCGGCCTCCGGTTGCGGAGAGCAGGAGCTGCTTCGTCATGTCCCGTCGCCTGAGGCAACGCCTGGCTCCAACGGGGGACGGAATGGGGCTGCTGGTGCCGCCCGTCAGTCGGTCCGTGACGCGGAGCGGCGGAGTCGTAGTGAGGCAATTTGACCGAACGGTGTGCGGGAGCTCGGTGCTTGTGATGCGAGCCAATCCATGAGGGTGCAGACGAGCGGGACACTCTCATTCCCGCTCTGCGGCATGGCAGCATCACTGGCGTCCAGCGCGCCGACCCGGCACACAGGAGATTCGCAGAAGCCGGAGCTATGTCGCATTTGCCGGATTTGACGAAAGTGGTCGAGAGCGGCGGATGACGCGCATAAAATCCCAGCTCAGGAAGT # Right flank : CCGCGGCGAGGTCGTTGATGCAGCGTGTGCCCGTGTCCGTCCCAGCGGCGAGCCCGTGATTTTGGGCGAGGGGTTCAGCGGTTGTCCCGGGCACGGGAGTGGGGCGCCACGCCGTGAACGCGGTTGGGGCCCGCGGGCGTTTCCGCGTCAATCGTGTTGGTGGTGGGGGAGGGGAGAAGGTTCGTGTGCCTTATTCGTCGGCGCGGGGTTTGCGGTGCCTTCCCGTCCCTGCGGCCATGGGGGACCGGGCGGGAGGCGTTGGCCGCGCGTCGTCGGCCGTCTGGGGGTTGAGGAAGCGGCGGGCTGCCGCGAGGTCGGCGACCGTGGCCAGCGTTGTCCACTGGTAGCCGTCCCATTCCAGGATGAGGCGAGGGGCGTTGGGGTGGACGTGGGCTCCCTGCGCCCCTGGGACGAGGGTGACGGCCTTGCGTTCGCCGACGGGGCGGAGTCGCTTTGCGCGGCGGGCCGCCCATCGGTCCAGGGGGTCGTCCATGGTCGTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 124790-127136 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS570395.1 Streptomyces sp. Mg1 supercont1.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124790 29 100.0 32 ............................. ATCCCGGGCCCCTTCTTGGGACCGCTTCAGAT 124851 29 100.0 32 ............................. CGCATCCACTCCCAAATATCAACGATTACAGG 124912 29 100.0 32 ............................. CTCGACCTGGAGAAGGAGAAGACCAACTCTCA 124973 29 100.0 32 ............................. CGGACTCCCTCCGTAACGCCGACTGGTTCCGG 125034 29 100.0 32 ............................. CCGCAGGTCGCATCCGATCTCCCCCCTACCCG 125095 29 100.0 32 ............................. TGCCGGCGTCGTGGATCAAGGACGGAGGCTGA 125156 29 100.0 32 ............................. CTGGGGGAACCGCCGGTGCTCGCGGAGATCAA 125217 29 100.0 32 ............................. CCGATCGACATACCCGTCCGCACATCCCGGCC 125278 29 100.0 32 ............................. GCGGCCTCGACCGCTGCCCGGCGGGCGTAGGC 125339 29 100.0 32 ............................. GAGCACAGCGCCGGCAGCCACGCCGGCGGCGG 125400 29 100.0 29 ............................. TCTGCCGCCGTACCGTCCCGCCGCTCTTG 125458 29 100.0 32 ............................. ACCGAATAAGCCCGCACGGCAATGCGAGAAAA 125519 29 100.0 33 ............................. TTCTCTGGTGTGGCCATCAGCCCGCCACCTCCG 125581 29 100.0 32 ............................. TCGCACGACAGCTCGCCGCTCTTGAGCCCACC 125642 29 100.0 33 ............................. ACTTCCGCCAACAACGCCAACAACACCGGAGAG 125704 29 100.0 32 ............................. TCGTCGCCACCCACCGCACCACGCAGGAGTCC 125765 29 100.0 32 ............................. CCTGACCCCGCCGGACGTCTGTAGCTTCCTGG 125826 29 100.0 32 ............................. GACCGTGAACGACGAAGCCTGCGGCGAAGGAA 125887 29 100.0 32 ............................. CAGCGCCGCTAGCCCACCACGAAGGGCGGGGT 125948 29 96.6 32 ............................A CCCCGTCCTCTTCCGGCGGCGCGTCGGGCGAG 126009 29 100.0 32 ............................. CATGCGCAGACCGTACGCGGGACCAGTGACAG 126070 29 100.0 32 ............................. TCGGTGCGGGCGGCGTCCCGCTCGGCGCGGGC 126131 29 100.0 32 ............................. TCTCTTCGCTCGTCGGCCTGAGGCCTACTTCG 126192 29 100.0 32 ............................. TATGCGCGGGATCTGAAAGTCCTGTTCTGCAT 126253 29 100.0 33 ............................. GACCAGCGCCGGGGATACCCCGAAATCAAAGTC 126315 29 100.0 32 ............................. ATCCGCTCGTGTCCCCAGGACCGCATCGTCGA 126376 29 100.0 32 ............................. CGCGGTCGCGTGCCGCAGGCCCGGCCCGGTGT 126437 29 96.6 32 ............................A CAGCCGAACACGTTCGCTGAGGTCAGCGAGAA 126498 29 100.0 33 ............................. GCGTGGGCACACCTTCTGTGGCTGAGGCCCAAG 126560 29 100.0 32 ............................. ATGACCCCCTTCGAGGTCCTGGGCCGGATCGG 126621 29 100.0 32 ............................. CAGCGGCACGACGCCCGAACCGCTGCCGACCG 126682 29 100.0 31 ............................. CCAACACGGTGAAGGCGCCGGGCATGCCTGG 126742 29 100.0 32 ............................. ATCAGAGGGTTCGCGAACGCGCCGAAGCGGAC 126803 29 100.0 32 ............................. TGCCCGTAGTCCTTGTCCAGTCGCCAGGTCAG 126864 29 96.6 32 T............................ GCCCGCTACCAGCACTCCTACGAGGAGCTGCC 126925 29 100.0 32 ............................. TGTTGTCCAGTATCGGCCGTCGGGCAGGTCTG 126986 29 96.6 32 ................A............ CACACGGCCCCGCCAAGGTGGTCGCCGGTGGC 127047 29 96.6 32 ...T......................... GTCGGCGTTACCCGGGTCAGGGCCGACCTCAA 127108 29 93.1 0 ...........G.............A... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TGGTCATGCTCGAGTCGGACAGCGGTGTCGCCGTTCCCGCCGGCCGCAACTATGCCGATGGGATGACCTGGTGACGGTGATCGTGCTCACCCAGTGCCCGGAAGGCCTCCGCGGATTCCTTACCCGCTGGCTCCTTGAGATCTCGCCCGGAGTCTTCATCGGCGGACCGTCCGCCCGCGTCAGGGCGGCACTGTGGGAGGAAGTGCAGCGATACGCGGGCATGGGGCGAGCCCTTCTCGCGTACAACACCGACAACGAACAGGGCTTCGCCTTCGAGACCCACGACCACAAATGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTCGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCGTCGAAGCGACGCCGGTTCGGAAGCAGGTAGATCCGATAGATACCCTATGTCGGAATCTCGGGAAGTGGTTCAAAGTAAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : CTGCCGACCGTTCTTGATCTTGCTCCGGGAAGGGGTCGTTTTGTGACAGTCGCCCAGCGTTTAGCCATAGCCCCTGCTCGGTCCAAGAGGACACCGCTGTCGTCCTTCGCCCGCTCATGCCGGGACGCCCTGCGCTGTCCCGGCAGCCCGCAGAGGAAGTCAGGTGACCAGCAGCGGATCAGCGCGCAAAGGTGCTCCGGCGACGGCGAATGCTGGCATCAGTGACGTGCGGGGCGGTGACGGTGCAGTCCTTCGGAACGGTTCGGATGGCCAGGGTCACACCGCTGGTGATCTGACAGCGGCGGCCGATGGTGACGCCGGGACCGATGCTGATGTTGTTGCCGGTCTGGGTGTCGTCGCCGATGACGGCCCCGAACTGTGTAGTCCCGCACCGGTAGAGGCCGGTCATAGTGCGGATGATCACTTCCCGATCGGGTGTACGCATGTCCGTGGTCATGTTGATCGCGGCCACGGTGACGCCGGCGGAGAGGTGGGCGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //