Array 1 38129-39355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYH010000034.1 Pseudomonas aeruginosa strain Patient_16_Baseline 54670_c0034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38129 28 100.0 32 ............................ CACCAGCACCGAGTTGGACGCCGACACCGAGC 38189 28 100.0 32 ............................ CGGAAGAAACGGCACTGCACCGCAGTTCGGCG 38249 28 100.0 32 ............................ AAGACGCGATGACCCGGGCGATGATCCACCGC 38309 28 100.0 32 ............................ AGATTCGCCGCGTCCAGGCCGTCCATTTGCGC 38369 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 38429 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 38489 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 38549 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 38609 28 100.0 32 ............................ AAGCGGCTGCATAAGGACCCGGACAATCCGGA 38669 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 38729 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 38789 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 38850 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 38910 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 38970 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 39030 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 39090 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 39150 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 39210 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 39269 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 39328 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48628-47880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYH010000034.1 Pseudomonas aeruginosa strain Patient_16_Baseline 54670_c0034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48627 28 100.0 32 ............................ AGCAGCGCCCGCCAAGCCTGCTGGCTGGGGTC 48567 28 100.0 32 ............................ CGATGCCGGGTTCGACGGCAGCCCGATACAGA 48507 28 100.0 32 ............................ ATGTAGCGCCGCATGACTGGGCCGAGTGACGC 48447 28 100.0 32 ............................ TTCACTAGAGCAGCCAATCAGATTTATGTCTT 48387 28 100.0 32 ............................ ATGTGGCCAGCATTCACTTCAGGATCCAGGCC 48327 28 100.0 32 ............................ AAGCGGATTGCGCGCCTGAAGCGCGTCGCATC 48267 28 100.0 32 ............................ TTGCATCGCACCAGCTTGCCGAATACCCAATC 48207 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 48147 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 48087 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 48027 28 100.0 32 ............................ CTCGAACCCACCTCGGCCACAACAGCCGCCGG 47967 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 47907 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGTAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 247007-246499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEYH010000008.1 Pseudomonas aeruginosa strain Patient_16_Baseline 54670_c0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 247006 28 100.0 32 ............................ ACAACAATCAGCACGCCCAGGTCAGAAGCAAA 246946 28 100.0 32 ............................ TTGACGAAGGCCGCCCGACGCTCGGCGTCGAT 246886 28 100.0 32 ............................ GTCTGTTCGTCTCCGAGCAAAGCGCAAACGTG 246826 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 246766 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 246706 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 246646 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 246586 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 246526 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGTGTGGGGAGGTTCTGGGTTTGGCATAGAGCCGAGGGCTGCCGGAAGAGAGTGGGCGACTCCGGAAGTTCCCGGATGGAAAGGGCTATAGAGAAGTCGAGGTCGGCCAGTTGTGCCAAATCAGTGCAAGACCGGAATCGACACCAGAAAGAAAAGAACCCGCGTTTTCGCGGGCTCTTTGGCATTACGTTTAATAGACCGAAACGTCAAAGGTAAGTCGCTTGCCTGTCCTATGCTCGTACCTCTCCACCGCCTTCCTATGGCTCTCAGAAGAGAAGCTGCCCTCGGCGAATTCGCATTCAACGCAAATGGTAGTAACGCGTCCATCCTTTCCTTCCGCGTTCACTTCAAAGCCCCAGTGAATGCGCCTGACGACAAAGTCCTCCATCCCCTTTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //