Array 1 123787-117780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJKFO010000009.1 Rubrivivax sp. JA1029 soapdenovo_K_105_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123786 29 96.6 32 ............................G CGCATCAGGTGCTGACCTCGCAGGCGAGCGCG 123725 29 100.0 32 ............................. GGCGCGTTCGACGTCAACTTCCCGGTCGCCGC 123664 29 100.0 32 ............................. GGCCCGGGGGCTGACGCGCCCAGGCTGAAGCC 123603 29 100.0 32 ............................. TTCTGGAACGCCGGCGCCAGGTTGGCCTCGGC 123542 29 100.0 32 ............................. TGCACCCAGGCCTTCGCGCGCGACGTGCTTGC 123481 29 96.6 32 ............................G GCTGAGGCCGCGCGGCTGGGGGATCTGGCAGG 123420 29 100.0 32 ............................. CCCGGGCCACAGCCGCCAGGCGCTGCGTCAGC 123359 29 100.0 32 ............................. ACGAGACGCGCGCAGCTCAGGCCGTCGAGAAC 123298 29 100.0 32 ............................. CAGCACAAGCCGGGCAGCCGACCGGGCCAGGA 123237 29 100.0 32 ............................. CCAGTGTCGAGAGCCGGCGGCGCGGCGCGACT 123176 29 100.0 32 ............................. ATGGCCTTCACTTCGGCCCGATTAAGCGGCCA 123115 29 100.0 32 ............................. CCCAAGGGCGGCCCCTTGTGTAAAGCGACAAT 123054 29 100.0 32 ............................. CACCCCACCACCATCGGCGTCGATCTCGCGGC 122993 29 100.0 32 ............................. AGAGGCCTCCGCGCACGCGGGGACGCCGTCGC 122932 29 100.0 32 ............................. TGCGCCTTGCGGCTGGGGAACCGCCCCTTCAG 122871 29 100.0 32 ............................. TGCCCGGCGAGCCCGCGGTGTGTCTTCTCGCG 122810 29 100.0 32 ............................. ATCGTCGACGCCGGCGGCACGGGCACCGACAA 122749 29 100.0 31 ............................. TGAGTCAGCACCGTTCCGAACGGCGTAGCGC 122689 29 100.0 32 ............................. GCGGCAGCCTGGTCGGCGGTCTTCGGCATCGG A [122687] 122627 29 100.0 32 ............................. AGGTGGTCTGTCTCGGCGCGTGGTCGTGACGC 122566 29 100.0 32 ............................. CGGACACCTCCACCGGGTCGCCGCCGCAGCCT 122505 29 100.0 32 ............................. GGCCGCGAGATGAATCTCGCGCAGGCTGATGC 122444 29 100.0 32 ............................. CGACGTTGGAGATGCTGCGCGAAGCCTCGGCT 122383 29 100.0 32 ............................. GGCACGCTGCCGCTGGTCGTGCTGCTGCGTCG 122322 29 100.0 32 ............................. ACAGCGTGATAGTGGATCGCGCCGCGCTTCTG 122261 29 100.0 32 ............................. ACACGCGCTTGACGCGCCGGAGTGCCCTCGAC 122200 29 100.0 32 ............................. TTCACGGTTGAACGGTCGATCCCGATCAAGAT 122139 29 100.0 32 ............................. AAGGCTTCGTCGACGACGACGAACGCCATGAC 122078 29 100.0 32 ............................. GGTATGCGGGCGCCCCATGATGGCTTCGACTT 122017 29 100.0 32 ............................. TCCCGAGGAAGGCGAAGAAGGTTCAGGCGACC 121956 29 100.0 32 ............................. AGCGCGAGGCGGGGTCGTGGACCTCAGGGCAC 121895 29 100.0 32 ............................. TTCGGGAGCTGACCCATGATCCCGCTGCCCGT 121834 29 100.0 32 ............................. TTCAGCGCGCTGTTGGTCGGGTTGAAGTCGCA 121773 29 100.0 32 ............................. TGGCCGACTGCCTGCGCATCGCGACGGCCCGT 121712 29 100.0 32 ............................. GAGGGGACGCTGGTCAGCGCCCAGCGGTCCGG 121651 29 100.0 32 ............................. CCAGCGCGCAAGCACCTGGCGCGCTTTGCCGC 121590 29 96.6 32 ............................G TCGGCTGAGCTGCTGGAGGCCATCGAGGAGAT 121529 29 100.0 32 ............................. GTAGAACGGCACGTTTTCCTGCTCGTCCGACG 121468 29 100.0 32 ............................. CCCGCGACGCAAGCCGCGCCAGCAAGCCCCCC 121407 29 100.0 32 ............................. TCGGCGGCGGAGACGGCGGAAGCGGCCGCCAA 121346 29 100.0 32 ............................. CAGAGAGCGTCATGTTGGCCATGGCTGCCTCA 121285 29 100.0 32 ............................. GACGAAGCCCCGCGCGTGGCGATGCTCGCACT 121224 29 100.0 32 ............................. CCGGCGCTCCACGCCTACGACTACGCACGCCG 121163 29 100.0 32 ............................. CGGCTTCGATGCACCTTTGAAGGCCCTTCGAA 121102 29 100.0 32 ............................. TACCCGGCCGGCAGCGGCACCGGCACCATCCG 121041 29 100.0 32 ............................. AAGCAGCTCACCGACGCCAAGCCGGGCGGCAG 120980 29 100.0 32 ............................. TGCAGCAGCTCGACCCGGCCGAGGCGCTACTG 120919 29 100.0 32 ............................. TTCATCCCGGCGCGAAGGCTTCCGTCCAATGG 120858 29 100.0 32 ............................. GCCGGCGGCGACGTCAGCTATGACAAGAACGG 120797 29 100.0 32 ............................. ACCGCCGAGGCCGGCACAGACGCATTCCGCGG 120736 29 100.0 32 ............................. CCTCGCACGAGGTTTCGATTGACCCGGATGTT 120675 29 100.0 32 ............................. GCGCCAGAGCGCCTGCGCCGTCCGCATACTGC 120614 29 100.0 32 ............................. GGCATCGCGCTGCTCCAGCCGACCCACGAATG 120553 29 100.0 32 ............................. AGAAGCGCCTGAAGCGCGAGGTCCACGAGGCG 120492 29 100.0 32 ............................. CCTTGTTGACGAAGGCGGGCTGCCCACTCGTG 120431 29 100.0 32 ............................. GACGAAAGGACTGCCTGAAAACGGGTGTTGGG 120370 29 96.6 32 ............................G TCGTCAGACCCCGGCACGCTGGCGAAGGGCCG 120309 29 100.0 32 ............................. CGGTCTCGGCGCCGGCCACCTTCATGCACCAG 120248 29 100.0 32 ............................. TCCTGACAAATCAAGTCGGCGTAGCCATCGGC 120187 29 100.0 32 ............................. AGCCCGGTCGCCGGCGGCGCGATCAACACCAC 120126 29 100.0 32 ............................. TCGGCGGCGGCATCTTCTCTGCATCCGTACTG 120065 29 100.0 32 ............................. GCGGCCATCTTCGCCCAGGGGCTGGAGCGGCG 120004 29 100.0 32 ............................. AGCGCCGGATTGTTGCCGGCCGCCTGGGCGCT 119943 29 100.0 32 ............................. TTCATCCAGTGACGACGCCCCCCCGTTCCGCC 119882 29 100.0 32 ............................. CCGTTTTTCTTTGCTGCGTGACTCCGTGCGTG 119821 29 100.0 32 ............................. TGGTCTTCGCACGGGAAGGGCGGAGCGATCAA 119760 29 100.0 32 ............................. CAACACGTTTGCGACTGCCATCAGCAATAGTC 119699 29 100.0 32 ............................. GGCGTGAGGCAAGCGTTCATAGGCTACTCCAG 119638 29 100.0 32 ............................. CACAAGGATTCACGCCATGCGCACTCTGGCAG 119577 29 100.0 32 ............................. GTCGCCGTGGGCTACATGGGCGACGTCTACGA 119516 29 100.0 32 ............................. ACCCGAAGGACTCGCAGGACACTCCCGAGCAC 119455 29 100.0 32 ............................. CTTGGTAGGCCAGGGTGGGGATGCCGATCTCC 119394 29 100.0 32 ............................. CTGGCGATCCTCCCGCTGGGCCTGTCGCGCAC 119333 29 100.0 32 ............................. CTCGCCGGCGTGGTGAACGACCTCGTCGGCTG 119272 29 100.0 32 ............................. TCCTGGTCGGTGCTCGGCTTCTTCGGGATGCG 119211 29 100.0 32 ............................. CGACTTGGCTCAGCGCTTGCGACACTGCGGCG 119150 29 100.0 32 ............................. GGCGCCTTCGCCGTCGCCGACCCGCGTTCTGG 119089 29 100.0 32 ............................. GTCGAGACGCCGGAGCTCGCGTGCCCTCTCGG 119028 29 100.0 32 ............................. AGCCCGGCAGGCTCGCTGGCGCGATCCCAGGA 118967 29 100.0 32 ............................. CGGAAAGGGGATCTCCATGAAGGGCCAGATCA 118906 29 100.0 32 ............................. CGCCGCGGCTCGCTGTACTCCGACGCGCTGAA 118845 29 100.0 32 ............................. GTCACCGGAAGTCCTTCACCAGCGTCGCGTAC 118784 29 100.0 32 ............................. ATGCCCCGCGTGCGGTGCGCACAGGTGGCGTG 118723 29 100.0 32 ............................. ACGAGGTCCCGGTCGGTCGGCGGCGCGACCGC 118662 29 100.0 32 ............................. CTGTCCGGCGCCTTGGTGCAGCCTGCGCCTAG 118601 29 100.0 32 ............................. GCCGAGGCGGCCAGCATCCGCGAGCACGTCCG 118540 29 100.0 32 ............................. ATGGCTGACATTCCGAACCGCCGAGCCGGTGT 118479 29 100.0 32 ............................. GGCTTCGCGCGTGGCTGATCGGCGCCGAGGCC 118418 29 100.0 32 ............................. CGTCAAGTCGTCGACGGCACCGGGAACCTCGC 118357 29 100.0 32 ............................. TCACGAAGCGCGCGCCGCACATCGGCGGGGTG 118296 29 96.6 32 ............................G CCGGCGTCAACGCCGCCGGCGGCCGTGCCGAA 118235 29 100.0 32 ............................. AAGGGCGACTTCATCGTGGCGCTGGGCCTGCC 118174 29 96.6 32 ...........................T. TGCGCAGCGGCCGATAGCGGCACGCTGCTCGC 118113 29 100.0 32 ............................. GGCTCGCTGGGGGCCGTGGCATCGGCCGCAGG 118052 29 96.6 32 ............................T GCAGCGCCAGACCGCGGCTTCGGATGCCCTCG 117991 29 100.0 32 ............................. TGCCGGCGGCGCAGAAGCTCATGGCACTGCCG 117930 29 100.0 32 ............................. ACCCGAAGGACTCGCAGGACACTCCCGAGCAC 117869 29 100.0 32 ............................. CAGCACGCGAGGGTGGATCACGGTGAGCTACC 117808 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 99 29 99.8 32 GGCTGCCCCGCGCGAGCGGGGATGGACCC # Left flank : TTGCCGCGGCCAAGCGCATCGAGCAGGGTGCCGACGAGACCGTGGACCGGCTCGTCCGGCAGAGTGCGGCGCGGGAGTTCCGCCGCATCGGCCTGGTGCCGAAGATGATCGACGACATACAGAGTCTTTTCGGGATCGCTCGCGATGGCACTGACGGTCGTGATCACGCGTGACGTGGACGACCGCTACCGCGGTTTCCTGGCGTCGGCGATGCTCGAACTGGCTCCTGGCGTCTATGCCAGCCCATCCCTGACCAAGGGCGCACGAGAGCGCGTCTGGGGGGTGGTGTCGGACTGGCACGCGCAGCTGGGGAGGGGCTCGATCACGCTCGTCTACCCGGACAAGCAAGCCGATGGCGGACTTGCCGTGATGCACCTCGGCGAACCCAACCGGAAAGTCGTGCGCATCGACGGCGTACTGCTGACGACCAAGGGTTAACCCTTGATCGCTTGACTGCTCCTTAACAAATTGACTTTGCGGATAGGAACTTAGGATTTAGG # Right flank : GCGACAACCGCCGGCCCCGCGCCTCACCCGCGCCGCCGCCCTCCCGCCCGCTCCCGGTGCAGCCAGGTCAGGCCCGAGGACGTGCCCAGCGGTTTGCCGCCGCGCGCGGGCCGGTACTCGCAGCCGATCCAGCCGTCCCAGTGCCCCTGTGCGGCCAGCTCGTCGATGAGCTCGAAGAGGTACGGGTAGTGCACCTCGCCGCGGTCGGGCTCGTGGCGTTCGGGCACGCCGGCGATCTGCAGGTGGCCGACCTGTCCGCTGGGCAGCCAGCGGCGCAGCTGCATCGCCAGGTCGCCCTCGGTGATCTGGCAGTGGTACAGGTCCATCTGCACCTTCAGCGCGGGCGAGCCCAGGGCCTGCACCGCGTCGTGCGCGTCCTGCTGGCGGCTGAGGAAGTAGCCCGGCATGTCGCGCTGGTTGATGGGCTCGATCAGCAGCGTGCAGCCGGCAGCCGACGCGCGTGCCGCGGCCCATGCGAGGTTGTCGTGCCAGAGCGCCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCGAGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //