Array 1 63940-63704 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI271421.1 Leptotrichia wadei F0279 Scaffold804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 63939 36 100.0 30 .................................... GTAAAATAGATACAATAACTTCTTCTACAT 63873 36 100.0 32 .................................... TTTCTTTTCTTCGATGTGGATTGGTTTACCAG 63805 36 100.0 31 .................................... TTACATACATCATTTAGACAAAACCATTTCT 63738 35 77.8 0 .............T-.....T...AA.T...G...T | ========== ====== ====== ====== ==================================== ================================ ================== 4 36 94.5 31 GATTTAGACTACCCCAAAAACGAAGGGGACTAAAAC # Left flank : AAACGAAGGGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCCTAAAAACGAAGGGGACTAAAACTTTACAGCCCATTGTTCTGCATCTTCTAGGTTGATTTAGACTACCCTAAAAACGAAGGGGACTAAAACAGAAAGAGTAAGCCTAGATACGCTTAAAATAGATTTAGACTACCCTAAAAACGAAGGGGACTAAAACATGATATAATTCATTTAGATTGAAAGAGATTGATTTAGACTACCCTAAAAACGAAGGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCCTAAAAACGAAGGGGACTAAAACTTTTGGAGCTTGATGCAAGAATTGATATAAA # Right flank : ATATATAGGTTTCTAAATTTAATGTTGTCTAAGTTTGTTAACAAAATAAAAATATTGATTTTAATAAAGAGCTACACAGCTCTTTTTATTTACTTATTCAAAAAAATATACAAAAAATTTTTTTGAAGTATTGACTACGTGTGTAATACGTGTTATAATGGTTTTGTAACTCAGGAATTACACAATAAAAAATAGATATAGGAGTTGATAAAGATGGATTTTTTTAACTTTTTAGATGATTTTTGGGATGTTGTAGGTGATGATGTTTTAGATAGGTTAAAAGATGTATTAGAGTATATAGTAAATAAATTATTAGATATTTTTAAAGAATTGGTTTTAGAAGTTTTAAGAAGATTAGTGTCAAAATCATTTAGATAGTATTTTTAAGAATAGGAAAAAAATCACGGTAAATTTCTATATTAAAATAGAAATATGTTATCGTGATTTTGTTATTCAAAATTAAAATTGCTAAGTTAATATTTAGAGATAACTTTTGCATA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAGACTACCCCAAAAACGAAGGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 64325-64094 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI271421.1 Leptotrichia wadei F0279 Scaffold804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 64324 29 100.0 39 ............................. TTTACAGCCCATTGTTCTGCATCTTCTAGGTTGATTTAG 64256 29 100.0 38 ............................. AGAAAGAGTAAGCCTAGATACGCTTAAAATAGATTTAG 64189 29 100.0 38 ............................. ATGATATAATTCATTTAGATTGAAAGAGATTGATTTAG 64122 29 79.3 0 .......................NNNNNN | ========== ====== ====== ====== ============================= ======================================= ================== 4 29 94.8 39 ACTACCCTAAAAACGAAGGGGACTAAAAC # Left flank : AAATTTAGAAAAGAAATTATAAGAAAAGGATATTATCAGGTACAAAAATCAGTATACATTGTAAGTTCTAGCACAAAAGAAAAAATAATTTCCTATGAAAATCAGTTGTCAATGATAGTTCCAGAAAATTCATCAGTAAGAACATTAATTCTAACAGAAGATCAATTCAAAAAAATGAAAATCTTATCTGGAGAAATAACTATCGGAGAAAAGATCATAAGAAAAGAAACAAAAATTTTGGAATATTAGTTTGCATTATGAGAAAAATATGGTAAAATAAATTAAAGGGGTAATCTAAATCAGTAAAAAAACAATAAATAATCAAATATTAAAATAAAAAGTAACATATTATCCCATAATTTGGATGGGATTTAGACTACCCTAAAAACGAAGGGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCCTAAAAACGAAGGGGACTAAAACTTTTGGAGCTTGATGCAAGAATTGATATAAAGATTTAGACTACCCCAAAAACGAAGGGGACTAAAACGTAAAATAGATACAATAACTTCTTCTACATGATTTAGACTACCCCAAAAACGAAGGGGACTAAAACTTTCTTTTCTTCGATGTGGATTGGTTTACCAGGATTTAGACTACCCCAAAAACGAAGGGGACTAAAACTTACATACATCATTTAGACAAAACCATTTCTGATTTAGACTACCTAAAAATGAAAAGTACTGAAATATATATAGGTTTCTAAATTTAATGTTGTCTAAGTTTGTTAACAAAATAAAAATATTGATTTTAATAAAGAGCTACACAGCTCTTTTTATTTACTTATTCAAAAAAATATA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTACCCTAAAAACGAAGGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //