Array 1 219167-214281 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHMR02000002.1 Bifidobacterium animalis subsp. animalis strain YL2 NODE_2_length_888144_cov_174.928, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 219166 29 100.0 32 ............................. TATCGTCACACCAGCCGCCTTCATGGCCTTGC 219105 29 100.0 32 ............................. TAGCGTACGGGTGCCACGTATTTGTTCCAGTT 219044 29 100.0 32 ............................. CGCATCGCGTACCCGCCGCGGCCGGTGCCGGA 218983 29 100.0 32 ............................. ATATAGTCGGCCTTCGCCCAATCATCGGACAA 218922 29 100.0 32 ............................. TCATCATCGACCATCTGCTGCTGATGACACAG 218861 29 100.0 32 ............................. GACATCGACGCGCTGATGGACGTGATCAACGC 218800 29 100.0 32 ............................. ATTCATTTCAAGACCGGCTATTCGATTCGACT 218739 29 100.0 32 ............................. GTCTGTGGCGGGAAATTGGTGTCTGCCATGGC 218678 29 100.0 32 ............................. TGCCTTACGCAGGTTGGAGCGGCTGATCGAGA 218617 29 100.0 32 ............................. CATGAGCACACCCACATTGACCGTCATCGGAC 218556 29 96.6 35 ...................A......... AAGAGCGTCGACCTCGCCGTGCTCGGCGGCAAGTT 218492 29 96.6 32 ............................A GTGTCGTGTCAGCCGCCACGGTGAGTGATTGC 218431 29 96.6 32 ............................C TCATGATCTCGTCGACGAGCTTGCCTCCGTCG 218370 29 100.0 32 ............................. TTCGGCGTGGGGACTGAAATTCCATCTATTCG 218309 29 100.0 32 ............................. CCGCGAGGTGATGGCGGTCAGGTCGACGCTTG 218248 29 100.0 32 ............................. ACCATCTACCACCCGCTGACCTTCGACCACTA 218187 29 100.0 32 ............................. CCTGTGACACCAGCTGTTCGGTGTACCCGTGA 218126 29 100.0 32 ............................. CGCTCGCGTCGGTGTTTAATCTTGACCGTGCG 218065 29 100.0 32 ............................. CGCTCGCGTCGGTGTTTAATCTTGACCGTGCG 218004 29 100.0 32 ............................. AACAAGGAGATCATCATGGCCGCGACCAACCG 217943 29 100.0 32 ............................. CCGAGGCACAGTTCGGTGCCGGGCTCAGGCAT 217882 29 100.0 32 ............................. ATAAGAAGTATGACCCGCTCGTCTCCGTGGAC 217821 29 100.0 32 ............................. ACATTCATCGCCGGCACGATTCCGCTGCCCGG 217760 29 100.0 32 ............................. ACCGCAGTACAACCTCCGCTCGGCATCCAGCG 217699 29 100.0 32 ............................. ATGTCGCCATTGTTGACGGAGGAAGACAGGTA 217638 29 100.0 32 ............................. ACCAAACCGGAACCGCCGGTGAGGTGGCTCGC 217577 29 100.0 32 ............................. ACCAAACCGGAACCGCCGGTGAGGTGGCTCGC 217516 29 100.0 32 ............................. GTCGCCACCACGCGGTTCGGTCGGTTCATCTC 217455 29 100.0 32 ............................. GCAAGCGACAGGACGCCAATATGCTCGGATAC 217394 29 100.0 32 ............................. TCAGTGGTGGTCAGGATGGCTTGCACGCCCTT 217333 29 100.0 32 ............................. CGGGTATGGACTCACAGCAACCAACACGGTCA 217272 29 100.0 32 ............................. GTCGGCATGGCCGTCGGCGCCATGAGCACCGC 217211 29 100.0 32 ............................. AGCTGCGAGTCCGGCATTTCCCCGAGCATGGC 217150 29 96.6 32 ............................C GCCCACCTCACACTCGGCGAGCGTGCCGAGGA 217089 29 100.0 32 ............................. CTCACCGATGTCAGCGGAGAGCCTTTCGTCGA 217028 29 100.0 32 ............................. ACGAAAACAACCACCTCGCAATAACATACCCA 216967 29 100.0 32 ............................. GGCGACTTGCCCAGCTTCTGGCCGCCCACAAT 216906 29 100.0 32 ............................. TTTGCGAGCTCGGAATCCAATGTAGCCCATGA 216845 29 100.0 32 ............................. CTCGCCACCAAACCCCCGGTGATATCGTCGCT 216784 29 100.0 42 ............................. GTCGCATCGAAGACCACTGACGGCACATGGGCCGAGACGGGC 216713 29 100.0 32 ............................. CGGTCCACGTCCGCGTCGCCGCCCAGGATCGC 216652 29 100.0 32 ............................. CAGAACGAACACGTCCTGTACACCAGAGACGA 216591 29 100.0 32 ............................. AACGGGAAGTACGTGGATTTCGTCAAGATCGC 216530 29 100.0 32 ............................. GGAGAGCATTCATGGCTGACGCATATGGGCCG 216469 29 100.0 32 ............................. AAGAAGGACGCAACAAAGGCTGCTTGACGGCC 216408 29 100.0 32 ............................. GCACCTGGCACTTCAAACGATATCTGGGAGTC 216347 29 100.0 32 ............................. GCTTGGAAACAGGCCGGTCTACAGGTATGCGG 216286 29 100.0 32 ............................. TCTGTGTCATACTTGAGTCATCAAGCAAACAA 216225 29 100.0 32 ............................. CCCCGAGCGCCAGAATGAGACGATGCCCCGCT 216164 29 100.0 32 ............................. TCCCAAGCGTCGTCGCTTGTGATCGGCCTGCC 216103 29 100.0 32 ............................. GGACTCGTCCTGTTCGCCCACGTCACATGCGC 216042 29 100.0 32 ............................. AGCCAAGACGGCGATACCGGGGACCGTGGCCA 215981 29 100.0 32 ............................. GAGCGAGCCATGAGCGCGTCGAACCAGACACC 215920 29 100.0 32 ............................. CATTCTTGCCTGCTGCGATGCGCCGCCTATGC 215859 29 100.0 32 ............................. CACTGCGCAGCCAGCAGATAGGTGTCATTGGC 215798 29 100.0 32 ............................. CGGGAGACCGCCAGCATTTCGATGAGCTTCAG 215737 29 100.0 32 ............................. AATGATTGGCATTCCGACATCGCCCGACTGAA 215676 29 100.0 32 ............................. CTGGGTAGGCTATGGCTGGTGACACCTGATGG 215615 29 100.0 32 ............................. TTGCGCCACATACGAGTCGGAATACAGGTCTT 215554 29 100.0 32 ............................. ATGCCGACGCCAGTCCATTTGCCCTCATAGGA 215493 29 96.6 32 ............................C CGACAACTCACCAAACACTGCAACAGCCACAT 215432 29 100.0 32 ............................. TGGGCGTCAGATAGTCCGTCAGACCTGCTCCT 215371 29 100.0 31 ............................. GTGTGTGATGGCGACGAACATCAGCCAGAAG 215311 29 100.0 32 ............................. CACACGCTGACGATGGCGCAAGCGATGTTGAT 215250 29 100.0 32 ............................. GCACGTGAAGCCCGCGAGAAAGCGGCAGTCAA 215189 29 100.0 33 ............................. GGAAGTGAACAATGCCGGACAAGATTCAGCAAT 215127 29 100.0 32 ............................. ACGTGGAGCGTGGACAGGGACGGCAGGGCGAA 215066 29 100.0 32 ............................. GAACTGTGGGTGAACCGCACGCGTTCCACGCA 215005 29 100.0 32 ............................. GCAATGAACTTTCGAACTCGTCGAACAGGATG 214944 29 100.0 32 ............................. GCGACCAGCCAACCGCGCGCATCGCATACGCG 214883 29 100.0 32 ............................. AGAGATCGTAAGGCTCCAGCAACGTGTGCGTG 214822 29 100.0 32 ............................. GATCGCGGAAAGCGCGCGGGGCATGCTCGGGT 214761 29 100.0 32 ............................. CATTGCAAAGAATGTTGGGCCATAAGAGCGCG 214700 29 100.0 32 ............................. GTCGCGGATCATGTGTGCCCGGATTGCATGCA 214639 29 100.0 32 ............................. AACCATACGAGCGCGCCAACGACCGCTGCGAT 214578 29 100.0 32 ............................. TATCAAAAACCGTTGGAATCAAGCCGTTCTAT 214517 29 100.0 33 ............................. TAATCGGAGGGTGCAATCGCACACTCAAACACG 214455 29 89.7 118 ..........T.....A......A..... CAGATTCGTCTGATCCGCGCCCGATGAAAGAAAACCGAGGCCTTGGGAAGTCACCAACAGGTGTCTTCGCAAGGCCTCATCTCATAACACATTCTATCACACCTAATCACGGTGATTG 214308 28 82.8 0 .......T........T...-.C...T.. | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 79 29 99.4 33 GTTTGCCCCGCACAAGCGGGGATGATCCG # Left flank : TTCTGATCGCGGGATTCGGGAACTACATTTGTGAGGCACCATGATAGTGATTGTGCTGACTTCCGCACCTCCGAAATTACGTGGACATCTCACTAGATGGCTGCTGGAAATCTCTGCGGGGGTGTATGTGGGCAAGGTCTCCGCTAGGGTGCGAGAACTCTTGTGGGTGCAGGTCCTTGAGAATCTGGAGGAAGGGAAAGCCGTGATGGTATATTCCTCGAATACTGAGCAGGGGCTTGAATTCAAGACTTATGGGCAGACATGGCAACCGATAGATTATGATGGATTGGAGCTTATCCTGCGGCCGGCCAAGCAATCTTCGGAGAATGATTCCGCCAGAAGACCTTCGCGCGGACGGCGCACGGGATGGAGCAATGCGTCGCGGTATCGACGATTCGGTCGATGATGGTGCGTCGAATAGCGACGACGGAAAGTGAGCGGAGTGTGCAAATCCAATCTTTTGACATAGTCGAGAGAGTGTTTTGCCAGTAAAGTCGGAC # Right flank : GAGTGGTTCCGGCTAGCCTTAGATGCCGGAACCACTTCGTCCAATCCTACCCCCCATCACCCATTGGAGCTGAATATTATGAACAACAATGCAAGGATTTCGACCGCCATAGGAGTCGTCTCACTGACGTTCGGCATCACAGCACTATGTGGAGCGCTGAACGGAAATGCACTAATATCCGGGGGATTCGCAAGCGCCGCCGTCATCGCTGGTCTCGCTGCCGGCATCTGCGCATGGAGAGGTCGTGGCGACAACTGAACGGTATCTGCTGGTGGCCGAGGTGGTCGGTTTGCTCCGTATGACTGGGGAGAACCCGAAGCATCCTATTGGATGGCTTCTCCGCAGCGTTCTGGTGTTGTGTGATTCATTACCGGCGAGCAGAATATGGGGGCGGTACACTTTCTTGAAGATGCACCTGCTTTATGCTTTATATTGTTAGATATCCCTAACATTCCTTATCCGTTTTGAGCGGATACTCAATTTGAAAGCACGGTTTTCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //