Array 1 1939-113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000020.1 Defluviitalea phaphyphila strain Alg1 scaffold20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1938 29 100.0 35 ............................. AATATCAAGGCACCCGAAAAATTTTTATATTGTTT 1874 29 100.0 37 ............................. CCATAATAGTAAAAATACATTAGAAAATAATAATGTA 1808 29 100.0 37 ............................. CTTAACTGCTTATGCAGGAGGAACAATCACAGTAACG 1742 29 100.0 37 ............................. CTCATCACTATTCCCTATTAGTTTCATTAGACTCTGT 1676 29 100.0 39 ............................. CAAAAATTGTTTGCTTTACGATGAATTACATCGTATTCA 1608 29 100.0 38 ............................. CTCGTCTAGTAAAATTTGCAGTTTTGAATAACACTCTA 1541 29 100.0 38 ............................. CTTAGTAATAGTACAACTCAACCCGTCATCAGATAATA 1474 29 100.0 37 ............................. CTAAAACATGGGAAGTTAGCTTTGAAGTGACGGAGGT 1408 29 100.0 38 ............................. CTCCACAATGCTATCTGAATAGTCAAGACTATTCCCGC 1341 29 100.0 36 ............................. CTATAATTTATCACCTTAAACATAAAAATGGAAAAT 1276 29 100.0 38 ............................. CCTAAAGTAAATGTTGCAGGTGAAGAAATGACAGTTGC 1209 29 100.0 38 ............................. CCAGCCACAATAGACAGTGTAACCACAGAGGGTTGCAC 1142 29 100.0 37 ............................. CTTTTAATTTTTCCTAAAATATTGGGAAAATTTTAAC 1076 29 100.0 38 ............................. CGCAACTCCATTTCAACTTGCCCATCTACAACGCTATC 1009 29 100.0 39 ............................. CTTTGTTGCTCCTGTAATAGTACAACTCAACCCGTCATC 941 29 100.0 37 ............................. CATAATCAGTAGAATATTGTAATTCGACAAGAGTCCA 875 29 100.0 37 ............................. CATAGATGAAGCAGATAATTTTACAGTAGAGGAAGGT 809 29 100.0 38 ............................. TCTTGCTTGCACATAAAAAACAGGCTTAATTCTATCTG 742 29 100.0 36 ............................. TTCAGATATGAAGGCTATTTCTACTAATGAATTTAA 677 29 100.0 38 ............................. TTTCGCTGTAGACTCAATGATTACCATGGTTTCCGGGG 610 29 100.0 36 ............................. TACATGAAAGTACAAGAAGAATATGAAAGCAGCAAA 545 29 100.0 41 ............................. TGCAGATGAAATTACATGTGGTCAATTAATAAACATATTAA 475 29 100.0 38 ............................. TTTGCACAAAAATATAAAATTGATTTAAATGGTGCAAG 408 29 100.0 37 ............................. TGTGGTTTGTTTGGTAGTTTAGGCACTGCATTGGCAG 342 29 100.0 36 ............................. TTTCTTTTGTCTTTTCTTTGCTAATAGGTTGTTGCG 277 29 100.0 39 ............................. TTAATGAAAATAAAACAAAACGCCAATGATGATTTGGCA 209 29 100.0 39 ............................. TATGGTATTAATTTTAAATATGCTATTGGCGGACAGTTA 141 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 100.0 38 GTTTTAATTCGACCATAGTGGAATGTAAA # Left flank : CTTAAAAAAAATGTTTCTTATAGATATCTAATTAGGCTTGAAATGTATAAAATAGTAAAGCATTTACTAGAAGAAAAACAGTATAAAGGTTTTAAAATTTGGTGGTGAAAATATTGTATATAGTATTGGTATATGATATAAATATAGAAGAAAATTCAGGTCAAAAAGTGTTAAGAAATACTTTTAAAATTTGTAAGAAATATTTACATCACATACAAAATTCTGTTTTTGAGGGAGAAGTGACAAAAGTACAGCTAGAAAGGCTAAAATCGGAGCTGCAAGAATATATAAGGAAAGACAAAGATTCTGTAATAGTATTTAAAACAAGGGCAGATAGATGGCTTGAAAAAGAATTTTGGGCAAAAGAAGAAGATTTAACAAATAATTTTCTTTAAAAAAATTCTGTCGATGTCCTAGGGTTTTTACATTATTGAAGGTAGACAGAAAAAAATATAAATTCAGGTGTTTGAAACACCTTATTTTATTAGATTTTTTCATGG # Right flank : ATCTCACTGAACTAAAAAAACTTGATGTTTATGATAATCTAAAATTACCCTAGTATAATAATTGAAAATTCCCCTAGAGGAATTATAAAATAACCCTATGAAATGTTTTCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCGACCATAGTGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12717-11100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000035.1 Defluviitalea phaphyphila strain Alg1 scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12716 30 100.0 36 .............................. GGAAAATATTGAAGATTTTATTTTAATGCAATACAC 12650 30 100.0 35 .............................. CAACTTAACCTGAGTCGGTTCGTAATCTCTATTTT 12585 30 100.0 37 .............................. TTTATTGTAATATTTTACTATTACATCAGACGCTATT 12518 30 100.0 36 .............................. ATAATACTAATGGGCAAATATGTACTATTGTATCTT 12452 30 100.0 36 .............................. TAATGTGAGAAGGGTGGTAAGTCTATGATAGAAGAA 12386 30 100.0 35 .............................. TCTAGACAAAAATCTATACTGCTTCCTCTATATCT 12321 30 100.0 36 .............................. AGGCACTCCAAATAATTCGGCAGTAAAAACTACTTC 12255 30 100.0 37 .............................. AAAAATCCTCTCCTTAATGCGTCTTTATCTAAATTAT 12188 30 100.0 36 .............................. ACATCTTTGTGGGAAGAATTTGCAAGGTATCTGGAT 12122 30 100.0 36 .............................. AATTGGTATAAAAAAGATTATTTTAATCGCTCATAA 12056 30 100.0 37 .............................. ATTTTAATAACAAGTTGCGGGAAGAATTTATTTGACA 11989 30 100.0 36 .............................. GTATTTTTCCCATGGTATGAAATGGACGAGTATCGT 11923 30 100.0 35 .............................. TCTTTATTTACCATGAAGTTTCCATCAGCTTTGCG 11858 30 100.0 37 .............................. TCAGTTGCAGGCTGGAAATCGTTTAAATAATATTTGA 11791 30 100.0 36 .............................. GTAGGTAAAAACAGTTATAATTTGTTCAAATGGTAT 11725 30 100.0 36 .............................. GTTGGTATAGGTATTATGAGCACAATGATAGGTATT 11659 30 100.0 37 .............................. TTTTTGAGGGAGGTGATGGTTCTAGTTCCGAGGATGG 11592 30 100.0 36 .............................. TCAACCTCAACAATATAATCAGAACTTACATTATCA 11526 30 100.0 37 .............................. GTTTGATAAGCTTTTTCTTGATAATATTTATCTAGTG 11459 30 100.0 36 .............................. ATAGCATTGCTATGCCCTAATACTTCTTCAAATAAA 11393 30 96.7 37 .............................A TCAGAACAAAAATCTATACTGCTTCCTCGATATCTGT 11326 30 96.7 35 .............................C AATTGCTACAGGGGCTTCTATAGTCCCTTATGTTA 11261 30 100.0 36 .............................. TCTGTTGTAATATTTTACTATTACATCAGACGCTAT 11195 30 100.0 36 .............................. TTTTTTAATAATTTAAAAATTTTTTGACCTGTTAAT 11129 30 96.7 0 ...............C.............. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.6 36 GTTTTAATTCGACCATAGTGGAATGTAAAT # Left flank : TTTAAAAGAAAGTCGATCAGAAAAAACTTTAAGAACATTTGAGAAAAGATTTGAAAAATACGACCTTATTATAGCTGATGAACTAGGATACATATCTTTTGATAAAGAAGGGTCCGAACTACTATTTACATATCTTTCTCTAAGAGCCGGTAGAAAATCTACAATAATTACTACCAATCTTTCTTTTGAAAGATGGGATGAAATATTTAAAGACCCTGTTATGACTGCTGCTATGATAGACAGGTTAACTCATAAATCATATATAGTCAATATGAATGGTAACTCATATAGGCTAAAAGAAACAAAACTATGGTTAGAAAATCAATAATTTTTTTACTCCCNAAATCATATATAGTCAATATGAATGGTAACTCATATAGGCTAAAAGAAACAAAACTATGGTTAGAAAATCAATAATTTTTTTACTCCCATAGGGGATTTTTCAGTTATATTTTAGGGGAATTTTCAATTGACAAATACACTTGAAAAGGAAATACAAA # Right flank : CTGTAATGTTTAATCTTGATAATTGTTAATGTCAATATCTTTTTTTAACATTTTTCAAAAATAAATTTTAACACTTTTGACTAATTATTTTTAGAATTATTATCAAATATTTTATCAATTCTATAAGATTTATCTGTTATTTTTTTCAATTTTAACTGACGTAATAACTGGTTTAGTATTACGTTAGTTATCGTTATATCATTAAATATTTCAAATATTGATTTTACTTTTAAATTTAAATTTTCAGACATTATTTTGTCATTATCGTCATGAGAATTTATTATTTTTGTAATTCTAAGGTTAATAATTAGTAAAAACTTATTATGATAATCAAGAATATTTATAATATCGAATAGAATTTCAATGACAATATTGAAAATGAGTTCATATAAAAGATTATGGATAATATATATTGGAAAATATCTCTTAGGAAATTTTATTATAGTAATACTTTCAATCATTTTAATTTCTATAACTTTTAAAATATATATAAATATGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCGACCATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 23933-24159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000013.1 Defluviitalea phaphyphila strain Alg1 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 23933 25 100.0 42 ......................... TCTCTGAAGATAAGTATGAAGGTAGTAGGAAATACAAATTTC 24000 25 100.0 43 ......................... GATATTCATTATGCTTCTTGTTTTGTATCACAAAATAAGTTTC 24068 25 100.0 42 ......................... TTACTGTGTATTTACCACAAAAAGATGGAAGTTTATTGTTTC 24135 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 4 25 100.0 43 AATTCCTTATAGGTAGTTTCCAAAC # Left flank : ATAATACATGTATTTATGTTATTTTTTTAATACATGTATTATGTATCGTACTGATATTATATAAAATAAAAAAATTTTGGTCAATTGTGAACTTTTCACTTATATTCTTGTCGTTTTTTGTCTATTTTTCTCTTATCTTTTGTTTATTTATTTTATATTATTAATTTTAAACAAATATTATACTATTTATGAAGATGTTTTTTGTTTATTTTTTATATGTATTTTGTATGTAATATACCTATACTAATATTTTACATTATATATATTGTTTAATATACAATTATGACATAAATAATACATGTTATATTTGACATAAAATTAAAAGGATTTTTTAAACAAATATATTGTTATATAACCAAATTTACCAAACAAAAAAATAGCCGCCACTTTCTAGTATTATGCTAAATACGATGAAACAATATACTAGAAAGGACGACTAATTATATCAGAAAATAAAACATGTATTTTAATTTTATATTTAAAATTGAGTAAAAATTTCA # Right flank : CCATTGGGTTGCTGTGTTTATCGCTATTTTATATTTTCTACGTCTTTTAAAAAAATCCTTCTTTTTTTATATATTTTTTTATAAAATATTTATTTTTCGGGGTTTGTTGGTTAAATTGAATTCCGTCGACCCCCCGGGATTTTTGCACTACTGGAGGTCGACAGATTTTTAATTTTATAATAATACATATTTAAATCTTTATCAACTTTTAAAAATAAAATTTTATTTATACATTATTCAAGACAAATTTCCCTTTTACTAAAGAAAATTTATTATCAAAATAGCTTTGTCCTTTTAGTATCTTACTGCCGGGGTAAATGCAAAATACAGCTTGTTTGTCTTCTTTATAAACTGAATTTTCATATATAAGTCCATATTTCCCCTTTATTCTAAGGTCTATTTCTTCAGGTTTTAGCTGTAAATAATTCTTTAAACTAATAGTTTCATCTTCATCATTCTTTTTTATGGTACCATCAACATTAATTCCCCAATTACTTAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTCCTTATAGGTAGTTTCCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 33413-33117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000013.1 Defluviitalea phaphyphila strain Alg1 scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 33412 30 100.0 35 .............................. ATTCATTGGAGTCTAAACCCCATTTTGTAATACCA 33347 30 100.0 38 .............................. AATTTATATAAATATCAATAAATTTTTAATTATATTTT 33279 30 100.0 37 .............................. TAAACTTCTAAATTACCATAATAAGTTTCAAGTACTT 33212 30 100.0 37 .............................. ATATATTCTATATTTTCACATTGAAACTTCCAATGCT 33145 29 93.3 0 ......................-......T | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.7 37 GTTTAGAAACTACCTATAAGGAATTGAAAC # Left flank : TTATATGTGAAGAGTATAATTCATTAGAAGAAGAAGACGATGACTGGGCATGTGATTGGAACGAAGTAATTGATGGCCCAGATTTAAAAAGTTATGGAGATATTTATTTAGAAAATGGATTTGATTCAACTGATAAGGCTATTGGAAGTACTTTATATTTAGTTGCAAGAACTGTTTGTGTTTTTGCAAAAGTAGTATCAGAGATAGCTAATACAGTTAAAATACCTATATGCATTGCTTTTCACGACCAAGACCCAATAATGAGAATAAGCAAAGATAATTAATTTAAATAGGATATTAAATTTTCAAATTCATAAATTAATAAAACTAAAAAATCCGTCGACCTCCAGTAGTGCAAAAATCCCGGGGGGTCGACGGAATTCAATTTAGCCTACAAACCCCGAAAAATAAGCATTTTATAAAAAAATATATAAAAAAAGAAGGATTTTTTTAAAAGACGTAGAAAATATAAAATAGCGATAAACACAGCAACCCAATGG # Right flank : AAGGAACTGCGAAAAGTAGTTCTTTTTTTATGTTTTAATTATTTTGAGAATTGTAGATAAATTCGAAATTTATTTAAAATAAAAAGGAGAAATATTGATTTTCTTGTTAAATATGATAAAATAAAAGCAAATTATTTATATTTATGATATAAATTTGTCTATTTATAGTGGTAATAAAATATCATTATTGAATTGAAGGGGTGTCTATGAAAACTATAAAAGTTAAATTTAACACCTTAACTCCTATTTATTTTGGAAACGCAATACAAGATTTCACAGAAATAAGACCGTCTGCAATTTTAGGATGTATGCGTTTTTGGTTAGATGTTGTAAATGTGTTAAATGATAAAAAAATTACGATGGATCAAATAGATGAATCAACAAAAAATACTAATAAAGAAGATTCTAAACCAAAGATTAATGAAATTATATTAAAGAAATTATTTGAAAATCCTAAAGATTCTTCTTGGGATGAAATGATTTTAGAGGAATACAAAAAA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAAACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 1021-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000060.1 Defluviitalea phaphyphila strain Alg1 scaffold60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1020 30 100.0 37 .............................. AAAATTACTAAGATTACTGAATTACCAGAAAAGTTTT 953 30 100.0 36 .............................. TACATAGATAACAACAAGACATTGGCACTTTCACAT 887 30 100.0 36 .............................. TGGAGTCAGATTGAGTAATAACTCCTTCTTGATATA 821 30 100.0 36 .............................. AAAAAAGAAGGGGGGACCCCCTTTTAATCTAAGCAA 755 30 100.0 36 .............................. TCCTATGTCGAATTTCTTCTACCATGAAAACATATA 689 30 100.0 36 .............................. TGACAAATGTTTCAGGATATATTATTATAATAACAA 623 30 100.0 35 .............................. TTCTTTTGTAAAGGTACTAGAGCATGTTTTTTACA 558 30 100.0 36 .............................. TATATACTACCTCCAAAACTATCGATATGAATTTCG 492 30 100.0 36 .............................. TTTTTTAATCCATATGGAGCAGGTCCACCGAGGAAA 426 30 100.0 35 .............................. ACATGTATTCCTTCAAGCCCGACTACATCTTCACC 361 30 100.0 36 .............................. ACCGTTGGTAAAATCTTAAGGGATTTGACTAATGGA 295 30 100.0 36 .............................. CAATCTAATGCGAACATATTTACTGCTGTAGAGCCA 229 30 83.3 0 .................T..TA...T...A | G [204] ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.7 36 GTTTAACCGACACATAAGATGTATTGAAAT # Left flank : GATTAAAAGATCATTTTCAACAGGATAATGAGTAAAAAACTACATTCTTAAATGATCAAAAAGTTACATTTTTAACTTGACATTTATAATAGGACTAGCAAAGACTATAGGT # Right flank : ATAATAATTAACAAGATTAAAAATATAAAACTTAACAAAATCGTAATAAAATATTATAATTATTTCTGAAAATAAAAATATATAAGGAGATAATTATAATGATAGAAATAATTGTATTTGTCAATTGAAAATTCCCCTAAAATATAACTGAAAAATCCCCTAGGGGAGTAAAAAAATTATTGATTTTCTAACCATAGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCGACACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 574-76 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000070.1 Defluviitalea phaphyphila strain Alg1 scaffold70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 573 31 100.0 35 ............................... CCTGTGATGATTCCCGGGATTTCGATATTGTCGAA 507 31 100.0 36 ............................... GACAGGTCTTTTTCTTTTTCTTTTATAAGTATTTGT 440 31 100.0 37 ............................... TTAGATGTGCATTTGTTAACAAATTCTTTAAGATATT 372 31 100.0 34 ............................... ATTGATTTTTTGGAGCTTTTAATTTTGCTTGGAT 307 31 100.0 35 ............................... CGTGTTTGCGTTGTATAACAAACACGTCATCGTCA 241 31 96.8 38 ..............................G AGTCATGACATTCAAACATATCAGACTCCCACCACAAA 172 31 96.8 35 ..............................G GTAACGCTACTGAAACAGCTGGGAAGCAAGCAAAA 106 31 96.8 0 .............................T. | ========== ====== ====== ====== =============================== ====================================== ================== 8 31 98.8 36 GTTTCTAGCCTACCTATAAGGAATTGAAACT # Left flank : TATAATAGCAATTAAAATATTAGATGTAGAAACACCTATTCCATTTATGGAAGAACTTCTAGGGAATAGAACGCTTTTAAATATTTTCCCTATGTTCTTAAATTTAACTATTAGGGAAGGAATTTAAGTCGAGATTTAAAAGCTTATATTGCTTTAAATAATTATATGTAACTTAACAAATTAAGTGAAAATATTATAGATTATAAAGATAGAAAAAACTGACTTAAAAATAATGGAATAAAAATGGATTTGTAAAATTAAAAAAGTCGTCGACCTCCAGTAGGGAAAAAATCCCGGGGGATCGACGACAATTTAATTTAGCCCACAACCCCCGAAAAATNACCTCCAGTAGGGAAAAAATCCCGGGGGATCGACGACAATTTAATTTAGCCCACAACCCCCGAAAAATAAACATTTTATAAAAAAATACATAAAAAAAGAAGGAATTTTTAAAAAGACGTAGAAAATATAAAATAGCGATAAATACAGCAACCCAATGG # Right flank : TACACAAAAAAAGTCGGCTTTTGCCGACTTTTTTAAGTTTCTATTTATGATAAATTTCTTATATTTAATATGAACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATAAGGAATTGAAACT # Alternate repeat : GTTTCTAGCCTACCTATAAGGAATTGAAACG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 643-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000042.1 Defluviitalea phaphyphila strain Alg1 scaffold42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 642 30 100.0 38 .............................. TGATTTTGTACGTATTCATCGATTAATTCTAGTATATC 574 30 100.0 37 .............................. AAATAAATACCAAAAAAAATTTACGCATTTAAAAACC 507 30 100.0 36 .............................. TCAGTACAGTAAAAATTCTAAGAAAAATATTTCTGG 441 30 100.0 39 .............................. TAAACACAACACACAAAACCAACTACACAAAAAAATAAC 372 30 100.0 38 .............................. TTAAATTCCCATATCCTAAAAATATAAAAGATATGGGG 304 30 100.0 36 .............................. TCAAGTATAGAAGATAAATCACTAGAATAATCGATA 238 30 100.0 36 .............................. GGTATAAACACGTTTAAGCCAAATTTTATATTGTCA 172 30 96.7 36 .........T.................... TAAACTTCTGCTACATAAGGTAATATACTTTTAGTA 106 30 90.0 0 .............T...G...........T | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 98.5 37 GTTTCTAGCCTACCTATAAGGAATTGAAAC # Left flank : TTTTGGGAATATTTTTTACGATGAATATGGGAAAATTGAAGCTATAGAATTTTATGAACCATCGCATATAATATTTAAAAATTATCAATTGATAAATCAAGATTATAAGATAGTTGAAAAGTTATTTATACAATTAGATCCCGATTTGATTTATGAAAAAGGTATAGGATTTACATCTGTTAAATATTAAATTGGAATATATGCTCCTTATGGAAAAGTAGAAGCAGTCCTTGTGGGTAGAGAAGGTTATTATAGTTAATTATGAAAATTAAAAAGAAATATTTATTTAAAAATATGGATAGAATTATTTTGTAAATAAACAAAACTAAAAAAGTCGTCGACCTCCAGTAGGGAAAAAATCCCGGGGGATCGACGACAATTTAATTTAGCCCACAACCCCTGAAAAATAAGCATTCTATAAAAAAAATATATAAAAAAAGAAGGAATTTTTAAAAAAACGTAGAAAATATAAAATAGTGATAAATACAGCAATCAAATGG # Right flank : TTACACAAAAAAAGTCGGCTTTTGCCGACTTTTTTAAGTTTCTATTTATGATAAATTTCTTATATTTAATATGAACT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 3375-2681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000042.1 Defluviitalea phaphyphila strain Alg1 scaffold42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3374 30 100.0 37 .............................. CTCATTATACTTCAATCTGTATTATTATTTCTTTCAC 3307 30 100.0 36 .............................. TTTTTATTCATAAAACTATACTTATTGTCTTTGCAA 3241 30 100.0 37 .............................. ATAATTTCAAATATTAAAGTGTCTTCTTTAGATGTGC 3174 30 100.0 36 .............................. TTTGAATCATATTTACCTTTTTCAATATCTTTTAAA 3108 30 100.0 39 .............................. ACAGATATTAATTTACTTGAAGCACAAACAGCATTAAAG 3039 30 100.0 35 .............................. TATGTAGAAGGTTTCACTGAAAAATTTCCTTTCTC 2974 30 96.7 35 .................G............ TCGTTTTGTATAAGGCAGTTAAACAATTTTTTAAA 2909 30 100.0 37 .............................. TTATAAAGACAAATGTACATGGAATTATGTCGCTAAT 2842 30 100.0 36 .............................. GTGCTTCTGAAGGAACTGGCACAGCGTGGAGTACGT 2776 30 96.7 36 .................G............ TTTTTATACGAACGATTTTCAATTCGTCCATATATA 2710 30 93.3 0 ............................GA | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 98.8 36 GTTTCTAGCCTACCTATAAGGAATTGAAAC # Left flank : TGATAAAATATATAGAGGGCCAGGGTATTAAGATGGATATTGATTATTTTGGTGAAACTAATTCTGAAATTTTTTATAAACAAGAAGAATATTTTAAAATACATTCTAAATATAAATTAATTAGTTTATTATCAGTAGCATTTATTCAACTTGGGATAATTGAAATAGAAAAATAAATCCTATTTAAATCCTTTATTTATAACATTACAGGATGTTTTAGAAAATAAAAATATAAATTTTAGATTTGAAAAGAAAACGGAAATACTAGATTATAAAAATAGAAAAAACTGACTTAAAAATAATGAAATAAAAATGGATTTGTAAAACTAAAAAAGTCGTCGACCTCCAGTAGGGAAAAAACCCCGGGGGATCGACGACAATTTAATTTAGCCCACAACCCCCGAAAAATAAGCATTTTATAAAAAAATATATAAAAAAAGAAGGAATTTTTAAAAAGATGTAGAAAATATAAAATAGCGATAAATACAGCAACCCAATGG # Right flank : TTCATTCTCTTTAGAACGATTTTTAAATAAAGTGAATATAATATTCACAACCACTGATTATAGGAGATGAGAGGATGAAGAAGGTTGTTTCTTTTATAAGAGGAGATGTGACAGGAGATAGAATAGCTGATAATGTATATCTGACAGGCATAAAAACACCAAATAGTCCGTTTATCCAAGATATAACTTTAGTAGTACAAGATATAATTCAACCCTTTATTTAAACGATTTTGCAGGGAATGGAGTATATGATATTTTGATTAGCATTACTTCAGGAGGAAGTGGAGGAATAACTTAATTTGTAAATCCTTTAAGTGGATTATATCCCGTAGATTTTGATGCTAATAGGGTATATGAATTATTAGCTTTTCAAAGGATAGCGGGAAGGTATAATGCAGATTCCCTAGGATTTATTCAAAATATTTTAAAATGGGATAAAAATAGATTTGTATTAGATAGACAATTTGTAGGGATTTTAGGGTCGGAAATGATTTAATCAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : GTTTCTAGCCTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 7303-6406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000042.1 Defluviitalea phaphyphila strain Alg1 scaffold42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7302 30 100.0 35 .............................. TTGCTTTTGTCCCTGATAATCTTTGTATTTATGAT 7237 30 100.0 35 .............................. ATTGTTGTGGGGATATTCCAAAAGCCGCTCCTATT 7172 30 100.0 37 .............................. AATTGTACTGAGTATATTCAATATCGCCTACATACTC 7105 30 100.0 36 .............................. ACAAGCTATTTTATTAGAATACCTACAAGGCAACTC 7039 30 100.0 36 .............................. CGTTGTGGAATACGTATATACGCATTCCACGGGTTG 6973 30 100.0 36 .............................. CTAAAAAAGGTGATACAATGTATAGATTGCTTTATT 6907 30 100.0 38 .............................. TATCCCAAAGAGTCGCTACAAAAGTAACTGGCATATAC 6839 30 100.0 38 .............................. GTCCCAATTTCATCATAAGGACTAAATACAAGAGAATC 6771 30 96.7 39 .................A............ ACTCTGTATAGCCCCGATCGGCTCTACCTATTTCCCGAT 6702 30 96.7 36 .................A............ ATATAGTATCTAATTCTTTACAACGTATTCTGATGA 6636 30 96.7 36 .................A............ TATATCCTGCATAAATATACCCTTTTGCAGTTTTTA 6570 30 100.0 39 .............................. AAAAGAGCTGCTATAGTATTGTTCTTAAAGGTAATAACA 6501 30 96.7 36 .................A............ TTCGCATATCGACAAGGTAATTCCAAAGGATAACCA 6435 30 93.3 0 ............................GA | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 98.6 37 GTTTCTAGCCTACCTATGAGGAATTGAAAC # Left flank : ATGGAGCGGAAATACAATTAATATTAAACATTAGTGGGACAGTATTAATAATAAAAGGATAAAAATTCATGAAGCAGGTTATAATTATCTGCTTTCTAAGCAAAAGAAATATTAGAAATTATATTAAACGCTGTAATAGAGCAGTATTGTATTAATTATAGCAGGATAAGTATGATTATGACGAGGATGAAAAGGTAACTTTTATGCCTTATATTTCGAATACTACAAATTTAATATCTTTAATATATCCAGAGAAAGTATTTATAAAGGATGTCGAAGTTGAAAAGGGTCTAATGATGTAAATGGCATAAGATAAATTTACAAAACTAAAAAAGTCGTCGACCTCCAGTAGGGAAAAAATCCCGGGGGATCGACGACAATTTAATTTAGTCCACAACCTCCGAAAAATAAGCATTTTATAAAAAAATACATAAAAAAAGAAGGAATTTTTAAAAAGGCGTAGAAAATATAAAATAGTGATAAATACAGCAATCAAATGG # Right flank : TTCATCTTCTTTAGAACAATTTTTAAATAAAGTGAATATAATATTCACAACCATTGATTATAGGAGATGAGAGGATGAAGAAGGTTGTTTCTTTTATAAGAGGAGATGTGACAGGAGATAGAATAGCTGATAGGGAATGGAGTATATGATATTTTGATTAGTATTACTTCAGGAGGAAGTGGAGGAATAACTTAATTTGTAAATCCCTTAAGTGGATTATATTCCGTAGATTTTGATGCTGATAGGGTATATGAATTATTAGCTTTTCAAAGGATAGCGGGAAGATATAATGCAGATTCCCTAGGATTTATTCAAAATATTTTAAAATGGGATAAAAATAGATTTGTATTAGATAGACAATTGGTAGGGATTTTAGGGTCGAAAATGATTTAATCATAACTAAGTCTTTAAATAATTCTTTGCTGTAAAGTTAAAAACTAATAATTATGTATATTTTTATTAAATATAATTGCCAAAGTTGTAAGACAATATTTAAAAAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTCTAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 30326-30486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000008.1 Defluviitalea phaphyphila strain Alg1 scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 30326 29 100.0 37 ............................. TAAAGATAAATTTATTCAAAAAATTAATAATTCAACA 30392 29 100.0 37 ............................. GATTCCACCAACTGACCAACAGACCCACTATATATTA 30458 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 100.0 38 TTTTCCTCCCTTATAGGGGATATATAAAC # Left flank : CTCAGCTTCCCAATGCCTTAGCCTATGAAGCTATCTCTCAAGGAATTATAAAAGAATTAAGAAATTATTCTGAAATAAAAAAGGAAATTACATATAAAAATAGTCGTTTTGATTTACAATTAATTGGAGATAAGACTTATTTTATAGAGGTTAAGGGAGTTACTTTAGAAAAGGATAATTGGACTTACTTTCCCGATGCTCCAACTTCAAGGGGGCGAAAACATATTGATGAAATAATTGATGCTGTTAAAAATGGATTTAGAGGTGTAATCCTTTTTGTAGTCCAAGTTTCTTATGCTAAGGGATTTAGTCCTAATGCTGTCACTGACCCAGACTTTGCTAAAAAACTTAAAGAAGCTTATAAAGCAGGAGTAGAAATACTTGCTTATAGATGTGATATATCTACAGAAGAAGTTAAAATTGTAGAAAAAATACCTGTTGTTTTATAAATATTAAAACAAATAATACTATAAAAAACCCCATGTGAAGGGGTTTTTTTG # Right flank : CCCATTGAATATACTATAAAAACTGTGTTTGTGAATTTTTTTAATTTTTATTTAATTATGACAATAATTAAATATGCGATGATTTCGTGCTTTCTTTTCTGTCGAACCCCCACATTTTTTACACTACTAGGGGTCGACAGAAAATTATAAAACTCTAATATAATTATCCCATTTATTTATCTCATTTATTAATTCAATACAGCCAAATCCTTGGGAATTTTTATTGCCTAAGCCACAGCTATAAGCTATATCTATTATTTCAGGATTGCCAATTATTATAAATCCTCCTAAAAATCCTTCATAAGGATATTTTTTATAAAAATCTACTACCTTTTTTGTTTTTTTATAATCTAAAATTTTTACTTCCAAATTTCCCTTATAATCATGATTATAATAAGCCTTATATTTTTTTAGGAGATTTTCTTTCATTTTTTCTGTAAATAAAGGATCTTTTATATCATAAAAAATATCTTGTCCATTTTCAATATATTTTTTTAACA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTCCTCCCTTATAGGGGATATATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 38421-37851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWID01000017.1 Defluviitalea phaphyphila strain Alg1 scaffold17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 38420 30 100.0 37 .............................. CCTACTAAAAGAATTTGTAGACAATCCTAGGAATAAG 38353 30 100.0 36 .............................. GTAGGCAATCCTATCATAAAAAAATAAGTCGACTTT 38287 30 100.0 39 .............................. ATAATTGTTGTAGGCAACGCACTGCCTTTATATTCCCCA 38218 30 100.0 38 .............................. ACAATTAAATCGTTATTATTTTTTTCGATAATTTGCCA 38150 30 100.0 36 .............................. ATATCCTCTAAATCTTCACCGGGGACATAAGAAAAG 38084 30 100.0 36 .............................. TCCCGCCAAATTCAGATAAATCGATAGAGTAACTTG 38018 30 100.0 38 .............................. ATATATATCATATCATTTCTATTTCTTGCATTTTCCGC 37950 30 96.7 39 .............................C TTAAGTAATGCTTTAATCACATGAATATCAAACCCTAAA 37881 30 96.7 0 .................A............ | G [37853] ========== ====== ====== ====== ============================== ======================================= ================== 9 30 99.3 38 GTTTCTAGCCTACCTATGAGGAATTGAAAT # Left flank : TTTAAAAAAACAAACTATAAATTTCTTGTGGATACAAATGTTTTACCTAATAGAATTTTAAAAAGCTGCATGTTTGATGGGGCTAACGCTTAGATAAATCAAATATTATAATAGCAATTAAACTATTAGATGTAGAAACACCTATTCCATTTATGGAAGGATCTCTAGGGAATAGAACGCTTTTAAATATTCTCCCTATGTTCTTAAATAAATAAAAAAATAAATTTTATTTATAACATTAGAGGACGTTTGTAGTATTCATAATATAGGTTATAGAGATAGAAAAAACTGACTTAAAAATAATGGAATAAAGATGGATTTATAAAACTAAAAAAGTCGTCGACCTCCAGTAGGGAAAAACCCCGGGGGATCGACGACAATTTAATTTAGCCCACAACCCCCGAAAAATAAGCATTTTATAAAAAAATACATAAAAAAAGAAGGAATTTTTAAAAAGACGTAGAAAATATAAAGTAGCGATAAATACAGCAACCCAATGG # Right flank : ACATCCTCTATAGAACGATTTTTAAATAAAGTGAATATAATATTCACAACCACTGATTATAGGAGATGCGAGGATGAAGAAAGTTGTTTCTTTTATAAGAGGAGATGTGACAGGAGATAGAATAGCTGATAGGGAATGGAGTATATGATATTTTGATTAGTATTACTTCAGGAGGAAGTGGAGGAATAACTTAATTTGTAAATCCCTTAAGTGGATTATATCCCGTAGATTTTGATGCTGATAGGGTATATGAATTATTATCTTTTCAAAGGATAGCGGGAAGATATAATGCAGATTTCCTAGGATTTATTCAAAATATTTTAAAATGGAATAAAAATAGATTTGTATTAGATAGGCAGTTTGTAGGGATTTTAGGAGATGAGATAGTTTAATAAAGATATAACTGAGCAGAATTACTGGCTCAGTTTTTTAAATGTAAATTTTATAATAATAAAAATAAAATATCATAATATTATACTTAAAAATTAAAGTTTATAGTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGCCTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //