Array 1 328926-330967 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLR01000002.1 Salmonella enterica subsp. enterica serovar Ealing strain CFSAN059900 CFSAN059900_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 328926 29 100.0 32 ............................. TTTACAGGTAAAGAGTGGCAAGAGGCGATGAA 328987 29 100.0 32 ............................. GTTCAAAAATTCAATATGAGGTTGGAAATTTT 329048 29 100.0 32 ............................. GCTACATCGACAGCCAGAACAATTTCACCAAA 329109 29 100.0 32 ............................. TGCTTCCGAATGCCTCAAAATCTCCTTTGACA 329170 29 100.0 32 ............................. GGTTATTAAACCGTTTCTTAACCAGGAACAGG 329231 29 100.0 32 ............................. GTATCTGGCCGCCGCACAGGGGCGCGACACCG 329292 29 100.0 32 ............................. CGCAAAAATTAATTCATATTATAAATATCTGT 329353 29 100.0 32 ............................. CGCTCACCAGCTCGCTCATCCCTGGTTGGCCC 329414 29 100.0 33 ............................. GTTGCGACTGACAAAGCCATCAGTGATAAATGC 329476 29 100.0 32 ............................. GCGCAGTTATGCCCGTCATGACCGTTACTGAT 329537 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAGCGCTACTACGCAC 329598 29 100.0 32 ............................. CCCACATTACGCGGGCTTTGTTGGGCATTATA 329659 29 100.0 32 ............................. AAATGTTTACACCTTCAAATACAGGTGAGAAA 329720 29 100.0 32 ............................. GACTACTATAAGTAGTCGGATAGTCAGGAAGT 329781 29 100.0 32 ............................. AGTTATTTTGGTATTGTCTCCGGGGCGAAAAC 329842 29 100.0 33 ............................. GGATTAGTGAATAAATCATATTCAGATATTGGC 329904 29 100.0 32 ............................. ATGTTTGACTCAATGAAGCAGCAGCAGCAGTA 329965 29 100.0 32 ............................. TAGCGTAATGAATATAGAGTGTTACAGGGATG 330026 29 100.0 32 ............................. AAAAATATTTACAGATTAAAAAAAACTTATCC 330087 29 100.0 32 ............................. ATGTGGTTCTCCAGTCTGGAATTTCGCCGTCA 330148 29 100.0 32 ............................. CTATAGCAGCACTCCGCCAGCTCGAGCAGCAG 330209 29 100.0 32 ............................. AGCACCTCAGGGACGATATTATTGGGACTATA 330270 29 100.0 32 ............................. GTTCTTTGACTCCACAGCAGGCGGCTAAGGAC 330331 29 100.0 32 ............................. TAATTCGGTGTGAGTTTTATATGCCATTTTTG 330392 29 100.0 33 ............................. CGAACGAAAGGAATCCCCATTCTCGGTGTTGGC 330454 29 100.0 32 ............................. GCCTCCATCATCAGGCGGTAATAACCGTCAAT 330515 29 100.0 32 ............................. ACGGCAACACTGCCAGCTGTCCCGGCAGTGCC 330576 29 100.0 32 ............................. TCCCTAGGAGTGAACGGGGTAAACATATTTTT 330637 29 100.0 32 ............................. CAGGTGTCGATATATTCACGTACCTGTCCGGG 330698 29 100.0 32 ............................. GACGCGATCGTCGAATATCGCAAACCAGCTCC 330759 29 100.0 30 ............................. GGTAGGGGGGGGATCAAATCGCTGGCAGCA 330818 29 100.0 32 ............................. CGCAGTTAGAAAAAAACTTACTATTTACGTAA 330879 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 330940 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 347255-349664 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLR01000002.1 Salmonella enterica subsp. enterica serovar Ealing strain CFSAN059900 CFSAN059900_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 347255 29 100.0 32 ............................. GATACTGTGTGTGTGTGCGATCCAATAACTAC 347316 29 100.0 32 ............................. GCGTCTGGTACTGGCGTTACCTACAACACACT 347377 29 100.0 32 ............................. GAAATCGTCAGGCTGATCCGTCAATTCTGGAT 347438 29 100.0 32 ............................. CGCGAGCAATTCCACCTGACGTTCCGGAGACA 347499 29 100.0 32 ............................. GCGATGTGTCGGAATATGCAGGCTGATTTTCG 347560 29 100.0 32 ............................. TCTATATCGAATATCAATGTATTAGTAATGAT 347621 29 100.0 32 ............................. GCGGCCGGTTTGATTTAAGGGGATTTTATGAG 347682 29 100.0 32 ............................. GCCGTGTACTGCTCCCCGCTGATTACGGGCAA 347743 29 100.0 32 ............................. GCCGTGTACTGCTCCCCGCTGATTACGGGCAA 347804 29 100.0 32 ............................. AGGTAATTGTGGCTCAACACATAGTAAAACAA 347865 29 100.0 32 ............................. CCGCCGACACAAAACAGCGGCGCGCTGGTGTT 347926 29 100.0 32 ............................. GCCGGTACATGCCAGAACGCCGGTTACCTCAT 347987 29 100.0 32 ............................. CGCGTGGCGTTGATTGTAGTGGTATGTATCAC 348048 29 100.0 32 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAG 348109 29 100.0 32 ............................. TTGGGATGTACGGAAAACCCGACGATGTTATG 348170 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 348231 29 100.0 32 ............................. TAAAATCCTGAACCTTCGGCGCTCCACCAGTC 348292 29 100.0 32 ............................. CATCACGGATAGGATATAAACACGGTTAAAAT 348353 29 100.0 32 ............................. CGATCAATACCATTTTTTCCGTCTTTATCTGG 348414 29 100.0 32 ............................. AACCGATACCGGCCAGCCTTATGGAAAAACAT 348475 29 100.0 32 ............................. TAGCCCTAATGCCTCTATTTTATTCGAAAGAG 348536 29 100.0 32 ............................. CCCGGCTGCAGATTTTGCTGCAGCCTCCAAAC 348597 29 100.0 32 ............................. CGCCTCAGCCGAGCGATAGACCAAGTAGATCT 348658 29 100.0 33 ............................. GCAGCGCGCCGCGAGTTGTCCAGGCTGTTAACC 348720 29 100.0 32 ............................. TCTGCGCTGACGAATTATCTGTATAAGTATTG 348781 29 100.0 32 ............................. CGTTCATCATAAATAGCCTGCTCGCACTCGGA 348842 29 100.0 32 ............................. TTGAGCGCTCCTTTTTCTGATGCCATGCTCCA 348903 29 96.6 32 ............T................ ACAGTATTACTTGTGAACTTAATAGAAAAAAC 348964 29 100.0 32 ............................. CGTCCGATCCTCGCTATCTGGATATGGCTGCG 349025 29 100.0 32 ............................. AGCCAAACATACGGGGTGTATCCATAGAACTC 349086 29 96.6 32 A............................ ACTATCTCAAAACCGAAAACGACGGGATGGAA 349147 29 100.0 32 ............................. TGAGTTTCCCAGCCCCTGATGCTCTTCTTCAA 349208 29 100.0 32 ............................. GTCATATGCCAGGCCAAGTAGCGCCTCCATCT 349269 29 100.0 32 ............................. AGTCGGAGGCTCTGAGTATAACGCCGAGAACG 349330 29 100.0 32 ............................. GCATATGCAGCGCTGGCTGGGCAGGCTGAGAT 349391 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 349452 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 349513 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTATCGGT 349574 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 349635 29 93.1 0 A...........T................ | A [349661] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGATCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGAGCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //