Array 1 263262-264143 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZQ01000002.1 Lacticaseibacillus brantae DSM 23927 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 263262 28 100.0 33 ............................ TACAATCGAAAAGCATGGCAATATTGTGCTTGA 263323 28 100.0 33 ............................ CAACAACTATTGAAGAAATTTTGCGCCATAGCG 263384 28 100.0 33 ............................ TGACATGGATATTTTGTTGAACAAGGTTTTGGA 263445 28 100.0 33 ............................ CAATGACGCGACACATAAGGGCGTAACAATCGT 263506 28 100.0 33 ............................ CGTAATAGCAATGACTCCCTGAATAATCAATGG 263567 28 100.0 33 ............................ CTATGACTTCAATAAACGGAAAATGCAGAGCCT 263628 28 100.0 33 ............................ TTGACTTTGGTTTTTCGGCGTCAGTCTTGGGCG 263689 28 100.0 33 ............................ TATCCATCAAAGGGACGGTGGCTTTGTCGGCAA 263750 28 100.0 33 ............................ CATTCAAGCCATGATTGATTCAGTTGAAGCCTT 263811 28 100.0 33 ............................ CGACTTCAACAAGAACTTTGAACGTTACCTTGA 263872 28 100.0 33 ............................ CAAGCGATTAGGTAACCAGGTCATTTCCTATCT 263933 28 96.4 33 ........T................... CTTGGATTTGATACCTGTGGTCTTGATGTAGTC 263994 28 100.0 33 ............................ TGGGGCGTATTTTTATGCCGCCGACTACACGGA 264055 28 96.4 33 ................T........... TTGCACCTCCTCGGCAGTGGCGCGGTCCATTGT 264116 28 78.6 0 ............T........C.TT.TT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.1 33 GTATTCCCCGTGCATACGGGGGTGATCC # Left flank : CTTGTGGCCGCATAAAAGACCTTCTTTTTGAGATTTTAATTGATTAATCAATCAATTATGATGAGTATAGTCTGATTTAAACTAAATGCAAGCAAAATCGTTTGGGCCGTCATGATTGATATTTCTAAAATCTCTGACTATATTGATTGTGATGGTAAAGGAGGGAGCTCAATGCAAACATTCAAAGTTGGAGACGTCGTGCAGTTGCCACAAAAGCCGTGGCAAGGTGTGACAGGCGTTGTGGTTTTCTATGATGCCAAGCGCGATCAATATCTGGTCCGTATTGGGGCAACACAACAAGTTTACTTCAAGGCAGACGAAATCAGCTTGTTTAATCAATAAGGAGACACCTAGTTCGGTGGTTACGACCGACTAGGTGTTTTTGAGTGGTTGTTCGCTTCGGGTTATTGGCATGAATTGCGAAATCTTAATGCGACGCAAGTCATGAAAAATGCTATATTGTAAATAAGTGAATGGCGGTCTGACGGGATTCTTTTAGT # Right flank : TATTGCCCAGCGCCAAGTCGCTGGGGTGAGGCACACCAGTTGACACATTCCAAAAAAGGTGTTTTAATGGTTTAAATAATTAAACCAAAGGAGAAATTCATGGCTGATTTTCAGCATTTAGAACAGGAGTTCACTGGCGTCAGCGACTTCTTGTCGGCGCTAGGGGATACGAAGCGACAAGCGATTATCGTTGCGCTCATCAATGATATCGGGCACGAAGAAATGCAAGTGACCGATTTAACTGAGCTGCTCGGCCTGTCACGGCCAGCAGTGTCTCATCATCTCAAAATTTTGCGTGACGCCCATCTGGTTGAATACCGAACAGAGGGGACCCGCAATTATTACCGCCTGTCACATGACCTGCGGGAAATTACGAAACTACAAACACTATTGGCAGATGTCGTTCAAATAATAGAGAGAAGTAATCGATCATGAAAAAAGTTCTCGTTGTCGAAACAAACGTAACGCACTATGGCAATACTGATGACCCCACCGGATTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGCATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 275950-277929 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZQ01000002.1 Lacticaseibacillus brantae DSM 23927 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 275950 28 100.0 33 ............................ CAACTTGAACGTCTTCGTGATGACATGTTGAAG 276011 28 100.0 33 ............................ TCATCCCGCCTAACCACATTAAGACGTTCATCT 276072 28 100.0 33 ............................ TCAACCCTGGCTTTATATGCAACAGCATCGGTA 276133 28 100.0 33 ............................ CGGAATTCATCCGACCGCCAAGCAGCACGCTCC 276194 28 100.0 33 ............................ TAGGTGATGCTAAAGGTGATGCTTTAGTTGTAC 276255 28 100.0 33 ............................ TACCGTCAGTCGAGTTCGAGTTCTCGTAACTGA 276316 28 100.0 33 ............................ CGGACTGCTCAGGTTTTGTTTGGCTTGTCTTAG 276377 28 100.0 33 ............................ CTGGGGACAGTCGAGGAAACACCGAATCAGAAT 276438 28 100.0 33 ............................ GGCGCGCGTTGAAAAATGACACCGCCATCGGCA 276499 28 100.0 33 ............................ CAATATTAGCTAAAAAAGTTCGCAGTCTAAGGG 276560 28 100.0 33 ............................ TGCTGGTTTGGTTAGGTACATGTGCTCCAAGGT 276621 28 100.0 33 ............................ TCCGCAAGTTCTCAAAGTTGTCAGCATTCTCTG 276682 28 100.0 33 ............................ TGCATGTTACCCGAAGTAGGTTTGCTTACAAAA 276743 28 100.0 33 ............................ CCATGATATTTCAATCGCAACAGGCATTCCAGT 276804 28 100.0 33 ............................ TGTTACTATCCACAAGGGTCAACCAGCACGACA 276865 28 100.0 33 ............................ CAAGGATATTTCAATCGCAACAGGCATTCCAGT 276926 28 100.0 33 ............................ TGCACGAAGTTCAATCAGTGCATGAGGTTGTCG 276987 28 100.0 33 ............................ CATGAGGACGCTATGCAAGGACTGTCACAACAA 277048 28 100.0 33 ............................ TGTGGAAACGTTGGTGGACGCAGTCAATAAGTC 277109 28 100.0 33 ............................ TGGAAGGCATTTGGCACCAAACAAATCAATGGC 277170 28 100.0 33 ............................ TGTAGAAATCGAAATCATCATTACCAAAGTAAT 277231 28 100.0 33 ............................ CCAGGGACCCGCTTTTGGTTGAGACCTCAATAA 277292 28 100.0 33 ............................ CTTTACTATCCACAAGGGTCAACCAGCACGACA 277353 28 100.0 33 ............................ CAAGGATATTTCAATCGCAACAGGCATTCCAGT 277414 28 100.0 33 ............................ TGCACGAAGTTCAATCAGTGCATGAGGTTGTCG 277475 28 100.0 33 ............................ CATGAGGACGCTATGCAAGGACTGTCACAACAA 277536 28 100.0 33 ............................ TGTGGAAACGTTGGTGGACGCAGTCAATAAGTC 277597 28 100.0 33 ............................ TGGAAGGCATTTGGCACCAAACAAATCAATGGC 277658 28 100.0 33 ............................ TGTAGAAATCGAAATCATCATTACCAAAGTAAT 277719 28 100.0 33 ............................ CCAGGGACCCGCTTTTGGTTGAGACCTCAATAA 277780 28 100.0 33 ............................ TTCCGTAAAGGTCTTGCTTCATCTTGCTGTCGA 277841 28 100.0 33 ............................ CATGCCGTGGGGCGAAGGCTACATCGAAGTCAA 277902 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 33 GTATTCCCCGTGCATACGGGGGTGATCC # Left flank : GCTTAAATTCAGAAAGTGACGCGCTTCTGTCAATCGGAGCGGTTAAGACCAATGGGGAAGAGTTTTATCGGTTGATTAAAGTCGAGGTTGATATTCCGCCAAAGATTCAAGAACTGACTGGTATCAGTACGCAACTGTTGGACGATTTGGGTGTGCCTTTAGCGACCGCTTTAGAAGAATTGCTGACTTTTGCTGGTCAGAAGAACCTGATTGGATATAATGCTAAGTTTGACGAAGGCTTTTTGCTAGCTGCCATGGAAAAAGTGGGGATTGATGCAACCGACTTTGCGATTCGAGATTTAATTCCGGCTGTCAAGAAACACAGCCGTTTTCTGCCCAACTATCGGTTGGAGACCGTCTTGAAGGAATTTGATGTTGAGAATCAGAATCCACATAATGCGCTGGCAGATGCGAAAGCAACTCTGGCTTTAGGAACCAAACTCATAAAAACTGGGACGTTTCGTTTTTGAAAGTGCCGGTCTGACGGGATTTTTTTTAGT # Right flank : CAAAAGAGACAGAGACACGGACAGCAATGACGAGCGCAACGACCAATACCCGGCCTCTCTTGGACAAATTAAGAAAATTTTCCCAACGGCGTATGAGGAATACCTGAGACTAGTTACAAAGATTGTGGAGGAAGAATAATGATGAATTTTGAAGATGACGCAATTCGCATCGTTTCGGAAGCAGAAGCCGCCTACGAAGAAAGTTTCGGAGTTCGTTTTCCAGTTGAGCTCTATCAGGACATTACACGAAATGAATATTATGATTTTTCGATTGAAGGCGCCCGCCGACTGAATGTGATTATTTTGAAAGCAGTCGCCGACGGCAAACCCGTTGATACGCCAGAGGATTTTTATCGGCGTCAATATTAGCAATTTCTCGACCTGAGCACGTCGTCTAAAAGGCTTATTTTTCTTACTCTCGTCGGGCTCGTGACCCGTCAAAACAAACGATAGGAGTGGACAGAAACGGCTGTGTATTTCCCGTACATAATAGGGATGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGCATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //