Array 1 819-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEI01000404.1 Serratia marcescens strain EL98 contig404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 818 27 93.1 32 --........................... GATTGGTTCGAGCCATCCCGAACCGTTGAAAA 759 29 100.0 32 ............................. AACAGGCTAACTTCACCGTGCTCAACACAGTA 698 29 100.0 32 ............................. TAAACCGCGCACGCGGCGCCGCAGATCAGATG 637 29 100.0 32 ............................. AACTGGCCGCATTTGGGTTAACGCCCGAGGAC 576 29 100.0 32 ............................. TTGAAGTAACTTATAGTGATGAGGGTGACCAC 515 29 100.0 32 ............................. TCGTCGGCGCTGACCGTGCGCTTTTCCTTTTT 454 29 100.0 32 ............................. CATGTTGCATAGATAGTGCTTGACTTTGTTTT 393 29 100.0 32 ............................. CGCTCGGTGATTGGGTTCATCTCGATGGTGCC 332 29 100.0 32 ............................. GGCATGTGGGAGTTTCCGCGTATTAACCAGGG 271 29 100.0 32 ............................. AGCGTCGCAAAGGCGACGGATGTTCTTCAGTG 210 29 100.0 32 ............................. GCGCCGTCCGGGATAATCGGTTCTACGTTGAA 149 29 100.0 32 ............................. TTAACGACGATCTGGCCGGAGTGGTAAACCGA 88 29 100.0 32 ............................. TGTTCTTCGTGCCGATGGCATACAACGGGCCG 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24888-25039 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCEI01000395.1 Serratia marcescens strain EL98 contig395, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24888 29 100.0 33 ............................. AGCCACGCCCGGCTTGCCGTAGATGCGTATTGC 24950 29 100.0 32 ............................. ATGTAGAAGTGGTTTAATAGGCTGCGGCTATG 25011 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTTGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGACTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCTGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : GACGCCGTCCGGGATAATCGGTTCTACGTTGAAATCTCGCTCCAGATTCTCCGGCTCAAGCGCCAGCGTGTGCACCAGCGAGCCGAACGTCAGCGCGTCGCTGCGTTCCCGGCCGATCGTTTTGATGACGTGGCGCCCGTGGTAATACATCAGGCTGATACGCGCGTCCTTCACCTGTGTGCTGCTGATGCCGTTCGCAGCGTGATAGGCTGTGTTTGAAATATCAGCGTAACGGCCTGGCTCGAAATACGCCTGCGCGCAATCTGCTGCAGGCTCACTTTCTTGTCGCTGCGCTAATTCCGCTTTTTCACCGTCGTTTGAGGCGTCATTGCATGTCTGCTCTGGTAACGGCTGCTGCTCGGCATCTTTGCTCGGCTCGCTATCAACCTGCACTGTAGCCAGCGGGGAGGCTTCGAAAAGACTGGACACATCGAAGCGGCCACCGCCTAAACTGACAAGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGCAGCCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //