Array 1 103630-102669 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJXA01000006.1 Enterococcus faecalis strain EN388 NODE_6_length_210384_cov_31.1668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 103629 37 97.3 29 ....................................G CCCGTAATCATCGAGGTGATGAAAAGTAT 103563 37 100.0 29 ..................................... CACACGCATGCAAGTGTACTGCTTGCTGC 103497 37 97.3 29 ....................................C TAACCACATTTGAAGAAGTCTATAACCTT 103431 37 97.3 29 ....................................A TTGACCCATTCTTGATAATCAAGAATGGA 103365 37 100.0 29 ..................................... TTTTTTCAGTTGGTGTTTCAGGTACAATG 103299 37 100.0 29 ..................................... TCATATTTTTTTTCTGAAATGAAATAACT 103233 37 97.3 29 ......T.............................. GTTCAGTAATATCATAATCCCATTTAACT 103167 37 100.0 29 ..................................... TTATTTTTAACTCAGTATGCTGGTTTTCG 103101 37 97.3 29 ....................................A TCTCTCCTAATGGAAATCCTTATGATGGA 103035 37 97.3 29 ....................................G TGCAACTGCAGCTTCTGATGCATTTCCCA 102969 37 97.3 29 ....................................A TTTTCTTAATATCCTGCTCCATAGCCACT 102903 37 100.0 29 ..................................... CCGCATATTATTAAATCGCTTAGAACGTT 102837 37 97.3 29 ....................................G AAAAGCAGTTCGAGCGGAAACTGCGACCA 102771 37 94.6 29 ....................G...............G ACTTACAAAAGACTGTGATTTACGTTATA 102705 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 15 37 98.0 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 15086-15276 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJXA01000013.1 Enterococcus faecalis strain EN388 NODE_13_length_51889_cov_34.8409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================ ================== 15086 26 100.0 28 .......................... AAGGTGGTGATACAGGTATAACAACGCT 15140 26 92.3 28 ...G...................T.. AAGGAGGCAATACAGATACAACAATGTC 15194 26 100.0 28 .......................... GAAGCAGTGATACAGGTACAACCCCACC 15248 26 80.8 0 G.T....A....T.G........... | TA,C [15268,15271] ========== ====== ====== ====== ========================== ============================ ================== 4 26 93.3 28 ACCAGAACCAGGAGATAGTGGAACTG # Left flank : CAAAAAATTAATCAATATCAACCGTTTCTTCCCGATCTCAATCGAAGTGACGAAGCAGTTGTCTTTGCTAGAGAGCTTGATTATCAAATCGGAAAATCAATAATTGGCTCAGAAGAAAACAAGCAGTTAAAATCGTTATTCACAAAAATTGAGCTTTCCTTTGGAAAAGAGATAATGAATGATCCGAATAATGCACATTTGAAGAAGTTATCGCTATCACTCAACGAACCAAATAGGCAACCTACTCAATCACAAGAAACACCTAAAATACAATCAGCACCACAACGTTCAATAAAAATGCCATCAATGTAAAGGAGAAGAGAAATAATGAAGAAATTTATATTAAGTAGTTTGTTTAGTGCAACTTTATTAGTAGGAGGTGTGTCTCACACTGCTTTTGCGGAGGAAAATTTACCTAGTAATCCTACGACCCCACCAAGTGAAGAAGTGATTCTACCGTTTACTGAAGACAGTACAACCCCAAGTGATCCAGTTCTTCC # Right flank : GGCGATAGTGAGCCAAGCCAAGCAACGCCACCAAATACAGAGAATAGTAATGCAGGTAGTAGTGATACCAATAAACCAACTCCACCAAGTTCAGAAAATACCGACACTGGACATACAGGAACGACTCCACCTACAACTCATGTGGGAGTAAATTCAGACGGGACGATCAATTCATCGGGAAATGGAGCACAAATGACTCCTATTCAAACGAATGATGTGAATGAATTGACACACATTCCAACAGCTTCTACGCCAGTTGAAACCGATACGGGAGAAAAAATCGTTTCCGTTGTAGACGGTGTGGCATACAAACAAGCAAATGATGGGACGTTGACGCCTATAACGGCAGAAGTGAAGCAATTACCTAGTGGAAATATTACAGTCAAAGGATCAGATGGCCAATTAAAAGTTCTACCAAAAACAGGAACAAAACAAACAGTTATGATGACGGTATTAGGTAGTCTTCTCACGTTAGGTTCAGCTTTTGTTTGGTGGAAAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGAACCAGGAGATAGTGGAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //