Array 1 95124-91315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDQ01000031.1 Pasteurella multocida strain 2320PM isolate swab isolate 1 contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95123 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 95063 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 95003 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 94943 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94883 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94823 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94763 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94703 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94643 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94583 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94523 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94463 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94403 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94343 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94283 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94223 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94163 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94103 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94043 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 93983 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93923 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93863 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93803 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93743 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93683 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93623 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93563 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93503 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93442 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93382 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93322 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93262 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93202 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93142 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93082 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93022 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 92962 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92902 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92842 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92782 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92722 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92662 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92602 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92542 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92482 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92422 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92362 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92302 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92242 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92182 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92121 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92061 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92001 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91941 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91881 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91821 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91761 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91701 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91641 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91581 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91521 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91461 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91401 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91341 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17446-18810 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDQ01000034.1 Pasteurella multocida strain 2320PM isolate swab isolate 1 contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 17446 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 17506 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 17566 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 17626 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 17686 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 17746 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 17806 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 17866 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 17926 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 17986 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 18046 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 18106 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 18166 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 18226 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 18286 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 18346 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 18406 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18466 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18526 28 100.0 49 ............................ GTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGAAAT 18603 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18663 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 18723 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 18783 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 23 28 99.7 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //