Array 1 70660-76629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZRR010000001.1 Acinetobacter indicus strain AI24 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70660 28 100.0 32 ............................ ATGCACAATGGATTGAAGGCGAAACCCGTTAC 70720 28 100.0 31 ............................ GATGTATGGGCGACCCCGCAATATTTGTTTG 70781 28 100.0 32 ............................ AAACTGGTATGCGTGAGTTCATTGCACTTCAG 70841 28 100.0 32 ............................ ACCAGGCAAAATTGACGTAATCATCCAATATT 70901 28 100.0 32 ............................ TTGTGTAAAGTCGGTGATGAATATATCAACTA 70961 28 100.0 32 ............................ TAGCCAAAATGGGTAGTAAGGCAGCTTTGTAA 71021 28 100.0 32 ............................ GATTACTAAGGTTGTTCTAAAGTATAACAATT 71081 28 100.0 32 ............................ TATTGAAATTGCTTTGTTTATTAAAAAGAAAT 71141 28 100.0 30 ............................ AAAGATACCGCTAAAATAGATGGAGCTTTA 71201 28 100.0 33 ............................ TAAAGTTTGGCGGCTCTAAATCAAGCGCACCTG 71261 28 100.0 32 ............................ AAGCAGTGACGGACCTGGGTGAGCTGCAAGAA 71321 28 100.0 30 ............................ TTAAAATTTCATTTTGTTTACTTATCTATG 71381 28 100.0 32 ............................ TGATAAAACAGTTGAAAAACAAACAGCCAAAG 71441 28 100.0 32 ............................ TCACCAGTGCCGCGATTACTCTGAGAACGTAC 71501 28 100.0 32 ............................ ATTGAGCGTGATGAGTCAATCATCCAGAAGAT 71561 28 100.0 32 ............................ AAGTCAAACAAGCATACATGCATGAGGTTGAT 71621 28 100.0 32 ............................ TATTGAGGTTATTCGTGGCGGCTTAGAACAAG 71681 28 100.0 33 ............................ ATATACATATCAAAGGTTTGCAAGGAATTTCAG 71741 28 100.0 32 ............................ TGAACGCACAACATGAGCTTTAAACAAACCGG 71801 28 100.0 31 ............................ ACCACTTGCCTTGTGTAAATCATTTAGGCAG 71861 28 100.0 32 ............................ TTAGTAAGCTCAACAGGAGTAGGGAATAACCA 71921 28 100.0 33 ............................ ATTCATTGAGAAGACCTGCACCAAAACTGTATG 71981 28 100.0 32 ............................ ATCATAAGACGCACCAATCATTGGCGCCGGAA 72041 28 100.0 32 ............................ TAACCAAGATGTTTTATGTGACAGCTGTGCTT 72101 28 100.0 32 ............................ TAACCAAGATGTTTTATGTGACAGCTGTGCTT 72161 28 100.0 32 ............................ AAAATAAAATATACAAATAAGAATATTTTAAT 72221 28 100.0 32 ............................ ATTGCAAGTTCAGGCATCGTTACTGCAAAGAT 72281 28 100.0 32 ............................ TCATTATCTAACTTATTAACTTTTACATTATA 72341 28 100.0 31 ............................ TCTCACCTTACAAGAGAACAGAAAAAAACTA 72401 28 100.0 32 ............................ ATAAAACACCGCCTTCAGAAGTTGGAGGGAAT 72461 28 100.0 32 ............................ CATTGCATCTTTAAGCGGATGAGCCAATAGGA 72521 28 100.0 32 ............................ CATTGTCTGCTGCGGTAAAGTTGATTCAAGGC 72581 28 100.0 32 ............................ TAGTTTGATGCTCACTACATTTTGTTTGGTAC 72641 28 100.0 32 ............................ AGCCGATGAAGTGAAAGACGCTGTAAACGTAA 72701 28 100.0 32 ............................ ATTGTGTATCAGCTGCCGCAGTAGGCTTAAAG 72761 28 100.0 32 ............................ ACTTGAAAAACTTGTAAATGAAGATTTACCAA 72821 28 100.0 33 ............................ TTAATTGGTGTTGACTCTGGGAATTATTTTATG 72881 28 100.0 31 ............................ TCTCCGGCGCGGTGCGTTTAAGTTTTGACTA 72941 28 100.0 32 ............................ ACAAGATAGTCATAGCCGCTTTTATCCGTCAG 73001 28 100.0 32 ............................ ATCACTTTTGCGGACTATAAGGACGACCTTAA 73061 28 100.0 32 ............................ AATTGGATGCCGCTTCTAAACATGCAGCGATA 73121 28 100.0 32 ............................ TGATAAAACAGTTGAAAAACAAACAGCCAAAG 73181 28 100.0 32 ............................ TCTTGGGTCTAGGTTAAAATTGGTTTAGATAC 73241 28 100.0 32 ............................ CGACAATCGCTTCGGCAATACCCACTTGTGTT 73301 28 100.0 32 ............................ ATCAACTAATCCTTTAAAAGAATTGGATAAAT 73361 28 100.0 32 ............................ TGAATATTTTGGCATTAAGCCATTAATTGAAG 73421 28 100.0 32 ............................ TAACCCCGATATTAGACAAGTAGCTTCATTGG 73481 28 100.0 32 ............................ TAGCTTTGCTAGTGGCGGATTGCGCCTTTCCA 73541 28 100.0 32 ............................ ATTTATCTATTCGCGGTACGCAGTGGATTCCG 73601 28 100.0 32 ............................ ACTTGAAAAACTTGTAAATGAAGATTTACCAA 73661 28 100.0 33 ............................ TTAATTGGTGTTGACTCTGGGAATTATTTTATG 73721 28 100.0 31 ............................ TCTCCGGCGCGGTGCGTTTAAGTTTTGACTA 73781 28 100.0 32 ............................ ACAAGATAGTCATAGCCGCTTTTATCCGTCAG 73841 28 100.0 32 ............................ GATTGATTGACTAATCGTTACGTCTGTTTTTG 73901 28 100.0 32 ............................ ATCACTTTTGCGGACTATAAGGACGACCTTAA 73961 28 100.0 32 ............................ AATTGGATGCCGCTTCTAAACATGCAGCGATA 74021 28 100.0 32 ............................ TAGAAATTGTTTTATCTGTTAAATTGACGCTA 74081 28 100.0 32 ............................ TGACGATGCCGCAGCCAGAAACCGCTGTAGCA 74141 28 100.0 32 ............................ ATTGCCAATTCAGGCATGGTTACAGCAAAAAT 74201 28 100.0 32 ............................ TGCCATGTAGCCGGCAAGGGCTTGCATGGATG 74261 28 100.0 32 ............................ ATCTTCATGCTTAACCGTGATGCCGTCATCAT 74321 28 100.0 31 ............................ CGCATCAGACCAAACTTCACCATTTACACTA 74381 28 100.0 32 ............................ TGAGCAGATGCTTCGCTACCGTGCTGCATCAT 74441 28 100.0 33 ............................ CTGAGTTTGCTGTAATTAACTTCTTGTTCACAG 74502 28 100.0 32 ............................ TTTCTTCGCCATGAGTAGCTACTCCTCAATTT 74562 28 100.0 32 ............................ AAAACCACTTTAAGCTGTTCTTTGGTTCGATC 74622 28 100.0 31 ............................ AAAATTCATCAAAGACATAAACAAAAGGCTG 74682 28 100.0 32 ............................ ACCATTACCACCATTCACTTGCTGATTCTCAG 74742 28 96.4 32 C........................... TACCGTATATAGACGATGCTGAAAAAGTTTTA 74802 28 100.0 32 ............................ ATCAAATGGATGGATGAATCAATTGGCGCATC 74862 28 100.0 31 ............................ TGATCTTTAATTAGATCAGGGTTTTTTAATG 74922 28 100.0 32 ............................ CAATAAAGCTGTCTGAGTAATCCTGATTAAAA 74982 28 100.0 33 ............................ CAGTATTTGAATGATGAAACCTATTCTGAAAGT 75043 28 100.0 32 ............................ CCCGCAGAGTTCCTTAAATGCCTAGAGGAAAA 75103 28 100.0 31 ............................ TGAAGAAGTAGGCGGAAAATTATATTCTCAT 75163 28 100.0 32 ............................ TCATCAAGACGCAGCAGGCGGCTTAATTTCAA 75223 28 100.0 32 ............................ ATTATCAGGTGCAGACTGTAACTTTAGATAAT 75283 28 100.0 32 ............................ TAATCCGATTACACAATTATCAGGGTCTTTTA 75343 28 100.0 32 ............................ ATTATCAGGTGCAGACTGTAACTTTAGATAAT 75403 28 100.0 31 ............................ ATGGCAGCACTGGCAACCTCTCCAATACCAA 75462 28 100.0 32 ............................ TGAGTCAATATCATCACGTTTTCGCAGTTTTA 75522 28 100.0 32 ............................ ATGTCGCCATAGAGCTTCATGCCTTCGCCACC 75582 28 100.0 33 ............................ TATGTCATTTTTCAGGTAAAACGACACAACCTG 75642 28 100.0 31 ............................ ATCTAATGTGTTAGCTTCAAGCCACGTCCTA 75702 28 100.0 32 ............................ ATGTTTAAAGCAATAACGCAGTTCGACAGGCC 75762 28 100.0 32 ............................ AACATCAGCAAACGTGCATGCAACCAAAGTGG 75822 28 100.0 31 ............................ CCAGCTTATTAGCTGAAATCCCTTTAGCCTG 75882 28 100.0 31 ............................ TGATCTTTAATTAGATCAGGGTTTTTTAATG 75942 28 100.0 32 ............................ TGTAACTGTACCAGTTCAGCAGCAAGACCAAA 76002 28 100.0 32 ............................ ACTTTGTAGCACCAATCTGTTCTTTAGGAAGA 76062 28 100.0 33 ............................ ACCGTGATGACAAGGGCAAAATCGTCAAAACTG 76122 28 100.0 32 ............................ GATGTACTCACGACCTTTAGCACGAATTGCTG 76182 28 100.0 32 ............................ AGACCACGCCTGTTTAAGCCCATTTTCTTCAG 76242 28 96.4 32 ..........G................. AAGGAATCGGAGATGATTTTACAACCACGATA 76302 28 96.4 32 ..........G................. ATATTCAAAAGAAAATAAATCCGGCTCTATTT 76362 28 96.4 32 ..........G................. GAACAGACGCTGGCTTAATTGTCTTGAGTCTG 76422 28 96.4 32 ..........G................. CCTATATTTCTTTTCTTCAACTGCATTAGGTT 76482 28 100.0 32 ............................ TGAAGAACTATAGATATTACGAGTAACTTCAC 76542 28 100.0 32 ............................ TATTAAGCGTATTAAAAAAAATATTATGAATT 76602 28 85.7 0 ............G.......T..CT... | ========== ====== ====== ====== ============================ ================================= ================== 100 28 99.7 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AAAAATGGCTCAGCCAATATTTGGATTATGTGCATATTAGTTCTGTTAAAACTGTGCCATTAGATAAATTAACCGGTTATGCAGTTTATAAACGTAAGCAAGTGAAAAGTAGTGCGGAAAGACTCGCTCGGGCGGAAGCTCAAAAAGGCCGTTATGATTACGAAAATGCGTTGGCACATTATCGGAAGTTTATTAAAACAACGAACTTACCATTTATTAATATGCTGAGTGATAGTAGTCAGAATACAGAGTTTATTCAGAAGCATGCATTTAAGTTATTTATTGAAAAACTTCCCGCTGAAAAATCTGAAACTCAGGTTTTTAGCACCTATGGTTTAAGTTCGGAAAGTGCTGTACCTGAATTTTAACCCAATATTTTTTTGATTCTTTAAAAGCTTAATAAAATCAATGAGTTATGATAGTGAGTTGAAACTTGGGTCTTTTATGGGTTTTGGGCTTTAACTTACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : AAATCACCCCAAATAAAACCGGAGCATCTCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAACAGGCTTCTTAACATCCAGGCAGTTTTTTCATGGACTTCCAATCGTTGGGTCAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATCAAAAATACTGCGTGCGGTCCGTGCAACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGCACACCTTCGACTTCTTCAATCGATGCCAGTTTTACAAATTCTTTATAGGTTCCCGGTGCCGGAAAACCTAGTGCCCGAATCCGCTCGGCAATAACATCCAGCGCATTCCATTGCTCGGTATATTGCGTCATAAACATGGTGTGCAGACTGTTAAACTGCGGCCCGGTCACGTTCCAGTGGAAATTATGAGTCATTAAATACAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGTCCTTCGACAATTTTGGCCCGGTTATCTTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //