Array 1 420986-423027 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKC01000005.1 Salmonella sp. zj-f75 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420986 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 421047 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 421108 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 421169 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 421231 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 421292 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 421353 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 421414 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 421475 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 421536 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 421597 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 421658 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 421719 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 421780 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421841 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421902 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421963 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 422024 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 422085 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 422146 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 422207 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 422268 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 422329 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 422390 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 422451 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 422512 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 422573 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 422634 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 422695 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 422756 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 422817 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422878 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422939 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 423000 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 97.6 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440660-442641 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKC01000005.1 Salmonella sp. zj-f75 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440660 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 440721 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 440782 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440843 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440904 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 440965 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 441026 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 441087 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 441148 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 441209 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 441270 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 441331 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 441392 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 441453 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 441514 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 441575 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 441636 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 441697 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 441758 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441819 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441880 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441941 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 442002 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 442063 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 442124 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 442185 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 442246 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 442307 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 442368 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 442429 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 442490 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 442551 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 442612 29 100.0 0 ............................. | A [442639] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //