Array 1 164761-163389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBZ01000001.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2710 NODE_1_length_602051_cov_6.60269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164760 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 164699 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 164638 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 164577 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 164516 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 164455 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 164394 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 164333 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 164272 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 164211 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 164150 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 164089 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 164028 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 163967 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 163906 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 163845 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 163784 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 163723 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 163662 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 163601 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 163540 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 163479 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 163418 29 96.6 0 .......T..................... | A [163391] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181777-181017 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBZ01000001.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2710 NODE_1_length_602051_cov_6.60269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181776 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 181715 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 181654 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 181593 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 181532 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 181471 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 181410 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 181349 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 181288 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 181227 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 181166 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 181105 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 181044 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGCCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //