Array 1 25584-24030 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTN01000005.1 Escherichia coli strain MOD1-EC5070 MOD1-EC5070_5_length_257447_cov_23.492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25583 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 25522 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 25461 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 25400 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 25339 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 25278 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 25217 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 25156 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 25095 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 25034 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 24973 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 24912 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 24851 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 24790 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 24729 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 24668 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 24607 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 24546 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 24485 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 24424 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 24363 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 24302 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 24241 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 24180 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 24119 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 24058 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52532-51283 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTN01000005.1 Escherichia coli strain MOD1-EC5070 MOD1-EC5070_5_length_257447_cov_23.492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52531 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 52470 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 52409 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 52348 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 52287 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 52226 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 52165 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 52104 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 52043 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 51982 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 51921 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 51860 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 51799 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 51738 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 51677 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 51616 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 51555 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 51494 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 51433 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 51372 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 51311 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //