Array 1 31954-30056 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTF01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain inss22 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31953 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 31892 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 31831 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 31770 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 31708 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 31647 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 31586 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 31525 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 31464 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 31403 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 31342 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 31281 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 31220 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 31159 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 31098 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 31037 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 30976 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 30915 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 30854 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 30793 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 30735 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 30674 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 30613 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 30552 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 30491 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 30430 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 30369 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 30308 29 100.0 11 ............................. CGGCCAGCCAT Deletion [30269] 30268 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 30207 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 30146 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30085 29 93.1 0 A...........T................ | A [30058] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49791-48236 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTF01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain inss22 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49790 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 49728 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 49667 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 49606 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 49545 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 49484 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 49423 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 49362 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 49301 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 49240 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 49179 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 49118 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 49057 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 48996 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 48935 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 48874 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 48813 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 48751 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 48690 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 48629 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 48568 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 48507 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 48446 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 48385 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 48324 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 48263 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //