Array 1 80035-83019 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAXZ01000014.1 Brachyspira aalborgi strain PC5099IV PC5099IV_contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 80035 31 100.0 37 ............................... CGTTGACTTTTTCGTTTTGCTACTTGTAAATATTTAA 80103 31 100.0 37 ............................... ATACTTATACTCATTTTTAAGCCAATCTACTATTCGT 80171 31 100.0 37 ............................... CTAAATGTTCCATAACCTCATGGTAATCCGAATTATA 80239 31 100.0 36 ............................... AATGAAATAATACGCTCTGCGTAAAAAATCAATCGG 80306 31 100.0 36 ............................... GTAAACTGCATACCAACAGAAGAGTTCTGTCAATTA 80373 31 100.0 36 ............................... TTTTAATTTGCGAGAGTGCATGCCCCACACCCCCGC 80440 31 100.0 37 ............................... TAATGTCTTTTTTGTATATATTGTAAAGCTTTAATAT 80508 31 100.0 36 ............................... CTTAGGAATCTATATATATTTTTATCTAGATTTCTG 80575 31 100.0 36 ............................... AATGGTATTGGGTATTGTAGAACTTCACTTGATGGA 80642 31 100.0 36 ............................... GAAATAATTGGATTTTTTGACTTACTTGTATTATGT 80709 31 100.0 36 ............................... ATTTCGTTATTGATTATTGAGCAGGCATAGGTATAT 80776 31 100.0 36 ............................... GTTTGTTTCAAGTTCTTTATAGTCGTTAATTGCACT 80843 31 100.0 36 ............................... TCATCATGTTGTGTATTTTTTCTCTCTCGTCAACTT 80910 31 100.0 36 ............................... AAGCATATTAACTTGTAATCGTTTTCGTTATAATAT 80977 31 100.0 36 ............................... TTTGTAAAATGGAGTAGAGGACTTGGAAAAGAATGG 81044 31 100.0 36 ............................... GTCGGAAATAGTCAATTTGTTGAAACTTCGTTTCTG 81111 31 100.0 36 ............................... CGCCCCCAATTTTGCTATCTATTTATATTTTACGAC 81178 31 100.0 36 ............................... CTCTTTTCTGCTCATTGTAGCCATCTTCCTCCGATG 81245 31 100.0 36 ............................... GTTATTTGATTCGTTATATAATCTCTTTGTATTTTT 81312 31 100.0 36 ............................... TTTTCTATATTTTTTTGTTGTTTTCTTTTTAGATTT 81379 31 100.0 36 ............................... TCTTGTGTTAGTTTTATTTGTTTTTGTTATATCTAT 81446 31 100.0 36 ............................... CCTTTAATAAATTGTGTATTTTTTCTCTTGTTTCAA 81513 31 100.0 36 ............................... GCTCAATAACGAAATTGGGCAGGTATTAGTATGTCA 81580 31 100.0 36 ............................... TTTGTTTGTTCCCAGCGCTTTACAAACTCGTTTAAT 81647 31 100.0 36 ............................... CAATGAAATAGTCGTTATCGTAACCTACTCTTAATA 81714 31 100.0 36 ............................... TTTTATAACGCAGAAGATTACAAACTAATATGCTTA 81781 31 100.0 36 ............................... ATACTAAACCATTTGAGCATGCAACCTATATATGCA 81848 31 100.0 36 ............................... GAATTAGAAACAAGAGAAAAAGAGTTAATGTTAAAC 81915 31 100.0 37 ............................... GACAATGAACAAGGCAAAAAAAACGCACAACAAATAG 81983 31 100.0 36 ............................... TATAATTAGCGGAATAGGAAAAGTATTAAAGTTTAT 82050 31 100.0 36 ............................... TCTAGCGTTGTTGCTATATTGCCTGCTGTCCAATTG 82117 31 100.0 36 ............................... TTTTACGAAAGGTTTTATTTCTTTGTCGTTTTTTCT 82184 31 100.0 36 ............................... CTTTCTTTTCTATATATTTTTTACCGTTCCCTCTAC 82251 31 100.0 38 ............................... ATGTAGCGATGGTGTCTCTTGCTCTGCGCTTCCTCCAA 82320 31 100.0 37 ............................... TTATTTTTCTGTCTTTTTCGTATATGAGATTCGTTTC 82388 31 100.0 36 ............................... AGAAGCTTATGACCTGCTTTTTACGAGTGATCTCTT 82455 31 100.0 36 ............................... GATACTTTTGCTCTTTTTTCTGTATACCAACTGAAA 82522 31 100.0 35 ............................... GCTTGATCGTAATATTGTTCTTGTATGAATAGTCC 82588 31 100.0 36 ............................... GGCATTAGCAGTTCTGAGTATATAGGATATATTAAA 82655 31 100.0 36 ............................... CGCTTTTGATTATATGTTCACTTTATTATTATCGTC 82722 31 100.0 36 ............................... AGCATTGTTGGCATTCTGGTTTTGTCCATAGACCTC 82789 31 100.0 36 ............................... AAAATCATAACTTTATAGTTTTACTATGAAGTTATG 82856 31 100.0 36 ............................... TATCTATACCTTGCCCTCCATATAGATTATTAGTCT 82923 31 100.0 36 ............................... TCGCTTCCTCAATTTTGCTATCTATTTATATTTTAC 82990 30 74.2 0 .............TT.G...-.C..AA.G.. | ========== ====== ====== ====== =============================== ====================================== ================== 45 31 99.4 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAAGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTAAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : TAGCGTTTAACTTGCATAAAACTTAATTTAAATTGCATGTTTCAGTTTAACTTGCATAAATTTAAATCTCGTATCTATTAAAGAACTCTCTTAAAGTCAATTTCTCAATTAACTTATACTTATATTATAAATCATAAAATATATTTTGTCAAGTGTTTTTTTGAAAAAAAATAAAAAAAATTAGCTTTTTTATATTAAATACTCTGTTTATACTACATTTAATACATATTTTAGCTTGAAAAAACATATATAGCATACTATATACTTTATTTTTAGATTATTTCATAATAAGTAAACATAACTACATACTAAAAATTAAAAAAATAAGAAAATTTTTAAATATTCCAAAAAATAAATCTAATCATAGTGGGATGTAAATAAATTAATTAAAATAGCTTATTTCAAGTTATTTCAATAATATTAATTAAAAAACACTTGAATTTTAATTATAAATAATTATACTATTATAATATATAATAAAAAAGAGGTGTTTTTATGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 125797-125095 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAXZ01000014.1 Brachyspira aalborgi strain PC5099IV PC5099IV_contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 125796 31 100.0 36 ............................... ATTTGAAAGATTGTAAAAAGAAACTTCAAAAGATAG 125729 31 100.0 36 ............................... ATTTAGTAACGCGCGATTATGCATGCGATAGAATTA 125662 31 100.0 36 ............................... TAAAGTCGGAGGCGATAACGAGGTTGAACTTTTTTT 125595 31 100.0 36 ............................... ATTTAGTAACGCGCGATTATGCATGCGATAGAATTA 125528 31 100.0 36 ............................... CTACGAAAGAAGAGCGCGCGACAGTCGTGCAGAGAA 125461 31 100.0 36 ............................... AAGTAGAAGGCGATACGGCGGACTTTTTACCAGCAA 125394 31 100.0 37 ............................... AATATTTGTCTTGAGTAAAAAAAGGCAATTCCCATTG 125326 31 100.0 37 ............................... AATATTTGTCTTGAGTAAAAAAAGGCAATTCCCATTG 125258 31 100.0 36 ............................... GGGTATAAGAGACGATGAGTTCTTAAGCGCGCACTG 125191 31 100.0 36 ............................... GACCTATAATAAACGATGATTTTTTGCAAGTAAAAA 125124 30 90.3 0 ........................A..A-.. | ========== ====== ====== ====== =============================== ===================================== ================== 11 31 99.1 36 ATTTACATTCCAATATGGTTAGATTTATTAT # Left flank : GAATATAATTTTTCAGATAGAGAAACATTTATAAAACAATCTTGCATTCTTGAGCCTGTTTCTTTCGAGTATAAAAGATTAGAAAGAGAATTATCGCTTAAAAATAAAGAAACGATTTCAAATAATGATTATCAAAAATTGAGATTAAATTGTAATTGGTGGACGCTTTTTGGAATATCGAATAATAACGAGTATTTGAGATTAACTTTATTTGGAATTAGAATTTCAATTAAAATGAATAAAGAAAAAGTTGATAATTTGGCTTGGTTTATTCCCGTTAAAAAGGGCGAGAGAATTTCAGAAATAAATTCTTTGATAACTTTATAGGGGGGGGGGATAATGGCTTTAAATTTTTATATCCTCTCAATTTTAGATTGGATTTAAATTATTGATCATAATATCTGTGGCAATAGGTTATTTTTATCATGCAGTTTTAAAAAAATATTATTTTTACAAATGAAAATATTTTATAAATAATTTGAAAATGGTCAAAAAGATAA # Right flank : TGCATAAATGAAAATTTAAAATGCATAAACTCAAATTTAAAACGCATCAATTTAAAATCGCATTAATTTAAACTGCAACTCTCATATAAAAAAAGCTGGCAAATAACAAAGTCTAACGACAGAGTTATTAAAAATAAAAAAATTAAAAACAGGAGAATAAAAATGACACAAGTATTAAACAAAACACAAAAAACTTTTTTAGAAAGTCAAAAAGAATATTCTATAATCAAAGATATTGTAGAAACAAAGCAAGCAGTAAAGCAAGATTTAGATACAGATTTTAATAATCTAAATTATCGAGCTACATTTGAAGATGAAAAATATTTTTATTTTTTAAAAGTTCAAAATACTTTTAAACAATATGAATTTCAAGATGATTATAACTATAATTATATTATAAGAGTTAATAAAGAAAATTATCAATGTTCTTTATATAAATTACAATGCGATATACACGATTTAAAATTAGAAGAGTATGAAGCCGAAAAAATATATTTTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTTAGATTTATTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [78.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //