Array 1 45472-43786 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQP01000008.1 Streptococcus agalactiae strain GCH36 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45471 36 100.0 30 .................................... TCGTAAAATGATAAGTAATACAATAACACT 45405 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 45339 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 45273 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 45207 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 45141 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 45075 36 100.0 30 .................................... TTGAACGGTCCAAGATTTTTCATCACTTGT 45009 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 44943 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 44877 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 44811 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 44745 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 44679 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 44613 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 44547 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 44481 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 44415 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 44349 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 44283 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44217 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44151 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44085 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44019 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 43953 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 43887 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43821 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //