Array 1 25303-26747 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJOM01000028.1 Tepidimonas taiwanensis strain I1-1 Tepi_taiwI1_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 25303 36 100.0 35 .................................... GCCTATGTCGGCAGCTACCACATACAGACCTGTCG 25374 36 100.0 34 .................................... ACGAGCAAAGGTATCGTTTGTTTATAAAGACGTG 25444 36 100.0 34 .................................... CCTGAGAGTATGCGCGATATACCGCGAGCGGACC 25514 36 100.0 34 .................................... TCATGCTCCAAAGTATACTTGGTCTATTGATGAT 25584 36 100.0 33 .................................... CCCAATCACCGGAACATCCACCTCTTTCAGATC 25653 36 100.0 34 .................................... GTCCTGGATATAGGCCAGCGCTTTATACCAGTCA 25723 36 100.0 34 .................................... TTTTCCCCGGCTACTGTTATCTCTTTAAAATACG 25793 36 100.0 35 .................................... CTATATCGTTAATATCTTTTAATGATACCAAATTT 25864 36 100.0 35 .................................... AGGAAGATCTGTTCTTTGTTTTCTAAGAGTATATT 25935 36 100.0 34 .................................... GCGTTGAGCGGCATGACGTTGGCAGCGGACATTT 26005 36 100.0 34 .................................... CCATGTCTTTGCTCCTATTGAACCGTTGTTAACT 26075 36 100.0 34 .................................... TCGCCGTCATTGCTCGTCCTCGACGTCGTCAGAA 26145 36 100.0 33 .................................... CGTCCGGGCGAACCGCCATTCGCCCTCGTAATT 26214 36 100.0 33 .................................... CGGTCGATGTTGCCGATTGCAAATTCATGGAGT 26283 36 100.0 36 .................................... CCAGTACACACGATCTCCCACCACGATCCATTGCAC 26355 36 100.0 35 .................................... ATCGCCGAAGCCGCTTAGACGACGCGGCTCGGCCA 26426 36 97.2 38 .....................T.............. TGGTCCACTTCGTCGCGCCCGTCCCGTCGGATTCATAG 26500 36 91.7 35 ..............T.............G.....G. GAGGGGACAATGTGACACAATGTCACAATGTCCCC 26571 36 88.9 35 T...........T...............G.....G. GATGGACATTGTGACATCGTGTCACAATGTCCACG 26642 36 88.9 35 .....G....T...........G...A......... AATGGAACAATGTGACGCGATGCCGCGTTGTTCTG 26713 35 75.0 0 ...T.GT...T.T.....C......A......-.T. | ========== ====== ====== ====== ==================================== ====================================== ================== 21 36 97.2 35 GTTAGACCGAAGCCCTGAAATCAAAGGGATTGAGAC # Left flank : CGGGTGAGGTATGCCTGGACATCGAAACACCGATGCGCCTGCAGCACAACGGCAAACCCCTGCCCGCAGCGGCGCTCAGCCCGCGTGCGTTGCTGCTGACTGCCGCGCGCCGTATCACCTTGTTGCAGGATCTCTACCTTGGCAGCAAAATCGAGGGACTTCCGCCTGTTGGCCAACTACTGCAAGCCATTCCGGCAATTACGGACGACCGCAGTCAGCTGCAGTGGCGCGACTGGACCCGTTACTCCTCGCGCCAGAAGCAAGAAATGACACTCGGCGGCGTCGTTGGCCGGTGGCGCTTGAGTGGCAACGTTGCCGTCATGTGGCCGTGGTTGTGGCTGTGCCAGTGGCTACACATCGGCAAGAACGCCACGATGGGAATGGGGGGGTACCGGTTGATATCATTATGATCACTTTTCAGAAAGCCCTGGCGCGCCACAGAAAAATTCGCAAGCGTGTTGCCAAGACGTTGAATGTTAACGTATATTCGACGGTCTGCA # Right flank : CGGTGCTGATATGGGGTCGGCGGCGATGGGTTTGGCGGCGACGTTGCCGGGTCGCGCAGGCTGTACGGGTACGAGTTCTGTTGGCCGAAGTGGCAACGTTGTCGTTTGGGTGTCGCGGTCCGGGTGGCGGTATATTGGTTGCGTCAGTCGATGTTCTGCGGTGAGTTCACCATGACGCAGCGGTCTCTCTATCTGTTCTGTTACGACGTTTCGTGCTCGCGTCGGCGGCGGCGGGTGCAGCGCTTGTTGGCGACGTATCGGGTCGAGGGGCAGAAGTCGGTGTTTGAGTGTCTGATGACGTTGGCCGAGGTGGCCGACGCCGTTGAGCAGTTGCGTCGGTTGATTGATCCGCAGACGGATCGGGTGCATGTGATTGCGCTCGATCCGCGCCTGCCGCGCGAGGGGTTGGGTCGCGGGCAGCCGTGGCAGGGTGGGCCCCACGTGGTGGCGTAGTGGAGGTGTGCGATGACGACGCTGTATGTGGACCGCAAGGGCGTGCA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGACCGAAGCCCTGAAATCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 27403-28346 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJOM01000029.1 Tepidimonas taiwanensis strain I1-1 Tepi_taiwI1_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 27403 28 100.0 33 ............................ CCGAAAGGCTGAAATCCCTGCGTGAAATGACGC 27464 28 100.0 34 ............................ CGTAACCGAAAGCAAGGAGAGTAAGATGGGCTGG 27526 28 100.0 33 ............................ CTTTGAGCATTAGCAAGCTTTCCAACCTTATCG 27587 28 100.0 33 ............................ CCATTCGATCCCGTCCGACGGCTGCTATGTCGT 27648 28 100.0 33 ............................ TGCCCGGGACCATTGTCTATTCTGGACCGTCGC 27709 28 100.0 33 ............................ TGGACGCCGAAGGCCGCCCATCTGATCGCGCAG 27770 28 100.0 33 ............................ TAGATGATGTTCCCGGGCATTATCCGTTCCCCT 27831 28 100.0 33 ............................ GTGACGGAGCGCTTCGCGGATTGTACCCTAGCG 27892 28 100.0 33 ............................ TGCCGGGGACCATCGTCTATTCTGGACCGTCCA 27953 28 100.0 33 ............................ TACACACGATTGGCGCGGCGTCGAACCCGGACG 28014 28 100.0 33 ............................ TTAGAGCCCGAAATCAACTCTAGCGGTAACAGT 28075 28 100.0 33 ............................ GCACTGACCAGTCCTGGGGCTATGCCCTAGATA 28136 28 100.0 33 ............................ CACTACGCAGCACGTAGCCGGTGGTCGGCTACG 28197 28 100.0 33 ............................ CACCTCGTCTTTTTGCAGGGCCTTGCTGCCCAG 28258 28 100.0 33 ............................ GCCCTATTGAGGCTTCGCGCATAGGGGTCGACA 28319 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 16 28 100.0 33 GGTTCCCCCGCGTATGCGGGGATTGACC # Left flank : GGCGTTTGGTGCCGTGCAAGCGATCCAACAGCGCAAGTCCGACCTGACCGTCGAGCGCGAAGTCCGGCGGCGAGCGGTGCAGGCCTTTCGGCGGGAAAAACTCATCCCCCGCATGATCGAACGTATCAAGGAGCTGTTCGATGTCGATGACCGTGGTGGTGACGCGTAACGTCTCGGCGCGGGTGCGGGGGTTTTTGGCGTCTGTGATGCTCGAGCTTGCCCCCGGGGTCTACGCTGGGCTTCGAATCTCGCCCGCGGTTCGAAGCCGGGTTTGGCAAGTCCTTGAACAATGGTTCACACACGAGTCACAAGCCTCCATCATCATGCTTTGGCCCGATAAAGAAATACCAGGCGGACTGGAGGTCAACACCCTGGGCACACCGCCGGTCAAGCTGGCCGACGTCAACGGTATCCTGCTGAGCCAGCGTCCGATCCGTCACACGGAGGAGTAAGCGCGAAAGTGACGTTTTATGTTCTTTAACAATGGGTTAGAATAAAGA # Right flank : GTCTGGCACTGTACCCTGCGGCCTGCCTCTTTAGTCGTCCCTGAAAAATTCATTTTCACGCCGCCCTTAGCCGCAGCTGGGCAGGGTTGGCGCCACTGGACTCGGTTGGCCGCCGCTGGGCGAGCCACCGGCCGATGAGGCGCACGGCCGCAATGAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTATGCGGGGATTGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 148-2737 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJOM01000027.1 Tepidimonas taiwanensis strain I1-1 Tepi_taiwI1_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148 28 100.0 33 ............................ TTGTATGTATCGCGTTGACCGAATCGACAAACC 209 28 100.0 33 ............................ CCGGTCAGTACTTTTTCCGGCTTCAGGGTTCGC 270 28 100.0 33 ............................ CCCGGTCAATGGGTCGAGATTGACGGCACGAGG 331 28 100.0 33 ............................ CAAGATCGCCGACCTTGCCAACGTCAAACCCGG 392 28 100.0 33 ............................ TGAAGTCACCCGGCTTCATGCTTACCCTTTCAC 453 28 100.0 33 ............................ CGGCCATCGGTCGGGGTCGCATGGTGCGGGTTG 514 28 100.0 33 ............................ TTTCAACCCATTGACCGGGTTTGACGTTGGCAA 575 28 100.0 33 ............................ TTGCTTATCAACAAGAACGCTCTTGTGCTTATG 636 28 100.0 33 ............................ TGGCGGCAAAAGGTGCAGGAGTTTCACCAGAAG 697 28 100.0 33 ............................ TCGTGCGCCTCGAGATAAGCAAAAAGGGATTCC 758 28 100.0 33 ............................ CCATTCCTCCGAATGCCGCGCCATCACGCGGCG 819 28 100.0 33 ............................ TGGAGCAGTCCCGGCCTGCGGCGTATTTCCAGT 880 28 100.0 33 ............................ CAGCGCGTCCTGCAGGCGGCGCGCGTCGCGGTC 941 28 100.0 33 ............................ CGGCATACCTCATGAAGTACGTGACCAAGGTGA 1002 28 100.0 33 ............................ CCAGCTCGCGATATTGCTGCCGATGTTGCTCAC 1063 28 100.0 33 ............................ CCGCACTGACGGGCCAGTAACAGGGTAGCCATC 1124 28 100.0 33 ............................ CTTCCTCGCCAAGCTCGCCGCGCCGGAGGTGCA 1185 28 100.0 33 ............................ CCCCATGGAGCCGGACCGCGCCCGCGCCATCGC 1246 28 100.0 33 ............................ CGGGCCGCCCCCTTGTAGCGCTTGCCAGCGTCC 1307 28 100.0 33 ............................ CCGGGATAACCCGAAACGTACGCCGCCCTTTGT 1368 28 100.0 33 ............................ TTCGCGCATAGTTTGCGCGCTGATTCCCTCTGC 1429 28 100.0 33 ............................ CCGGTCGGGCGATGGCCTCCGAGTGCCTCTTGT 1490 28 100.0 33 ............................ CCTTTGCCGCCGTACGCGACATGCCCGTGATCA 1551 28 100.0 33 ............................ CTGCGCGAACGAGTCCCGGCGCAGCGCCTTGCG 1612 28 100.0 33 ............................ GCGGTATATACCGCACGCGGGCCATGCGCCAAA 1673 28 100.0 33 ............................ TGATCCTCATCGCGTTGTTTTGGGCGCTGAAAT 1734 28 96.4 33 ..C......................... GACCTCGGCCACGCCGTCAGCGCCGAAGTGCGC 1795 28 96.4 33 ..C......................... CCGTCTGGCCTTTTCGTTGCTGGCCTCAACCCA 1856 28 96.4 33 ..C......................... CCGGAAGACCATAACGACGGATGAGGTTTTTCA 1917 28 92.9 33 ..C.........C............... GCTGCACGGCCTAGAGTGTCCCGTCGGGTATCG 1978 28 92.9 33 ..C.........C............... ATAGTCCGCCACTTCTGTGAGCACGCCCTCATA 2039 28 92.9 33 ..C.........C............... AATCCGTGAACACCCCACGGGCGCTGATCTTGT 2100 28 92.9 33 ..C.........C............... GTACCGTTGTTTGGTGTCGTTCATGGTGTCCTC 2161 28 92.9 33 ..C.........C............... CGCCTCTGTCACCGTCTCCGACGCCGAAAAGGC 2222 28 92.9 33 ..C.........C............... TGTGCCGTGGCGACCAATCATGAGCACCACGCC 2283 28 89.3 33 ..C.........C............C.. CGACCCCGACAACCTGCAGCCGCTCTGCCGCGA 2344 28 92.9 33 ..C.........C............... CGACCCGAGAGCGAAGCCCTACCGTTTCGAGCG 2405 28 92.9 33 ..C.........C............... TTGAACCCGAGCCACGCGACAAGAAACGAAAAA 2466 28 92.9 33 ..C.........C............... CCGTAGCCAGCTGCAGCGTCACCCGAGCGGCGA 2527 28 92.9 33 ..C.........C............... TGATTGCCGCCGGCGAGTACCGCTACATCTCCC 2588 28 92.9 33 ..C.........C............... CACGCCCGCCGGCCGTAACAGCGAAAAGCCCGT 2649 28 92.9 33 ..C.........C............... CGCGACTGGCGGCGTATCGCGGTCACAGAGGCG 2710 28 89.3 0 ..C.........C.C............. | ========== ====== ====== ====== ============================ ================================= ================== 43 28 97.3 33 GGTTCCCCCGCGTATGCGGGGATTGACC # Left flank : CTTTACAACCACCAGCTGCCCCAGGCCGCACTCAAGGGTCTCACGCCCATGCAGGCCATGAAACAGTGGTACACGTCACACCCGCATCTGTTCCAAAAACGGCCATATGATCATCCGGGATGTGACAGCTAGGGCATGATCCGCGAAG # Right flank : CCAACCATCGCGCGGGCCGGCGGCATCAGCGCCGGAGCTCCCCTCCCGCGAGGGATCAGCCCGCATGAGCGGCTTGCGCCAGCACCTTTGCCGCCCATTGGTTGAGACTTGTGCCCGCTGCTTGCGCCGCCACCAGCGCGGCGCTGTGCACTTCGGGCGGGACGCGCAGCATCAGGCGGCCAGAGGCCGGCTTCTCCGGCTTTTTGCCGAGCTTTGCGCAGGTCTCCAGGTAGTCATCGACGGCTTCCTCAAAAGCGGTGCGCAGGTCGGCCACGTTGTCTGCGTGGAAGCTCACGATGTCCTGGATGCCCAGCAGCCGCCCCACCAGGATGTTGTCGCGGTCGTCAAATTCGATGCGGGCGGTATAGCCCTTGTAGGTCATGGTGTTCATGGCTTGACTCCGATCCGTTCGAGAAAGGTGCGTGCATCCTCCACCTGATACGGCTTGGCTTCCTTCGCCGGGTGCGGGCGGTGGAAGGTGGCGACCTTGTCTCCGAAGG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTATGCGGGGATTGACC # Alternate repeat : GGCTCCCCCGCGCATGCGGGGATTGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1151-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJOM01000077.1 Tepidimonas taiwanensis strain I1-1 Tepi_taiwI1_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1150 28 100.0 33 ............................ TCGGCGCATATCTTGCGCACCGATTCCTTGACA 1089 28 100.0 33 ............................ CGTTCCCGGGCATTATCTATTCTCCCCTTGTTG 1028 28 100.0 33 ............................ TCTCGGCCCACTGGCCGGGCTTGACGTCGGCAA 967 28 100.0 33 ............................ CGACGGGAGACCTCGACCGCTGAGTAACCCTGC 906 28 100.0 33 ............................ CATTATCTATTCTGGACCATCTAGGTTCGACGC 845 28 100.0 33 ............................ TCCGTGGCGATAGTGGCGCATGGTCCGGGCCGC 784 28 100.0 33 ............................ CGGATAATGCCCGGACATATTATCTATTCTGGA 723 28 100.0 33 ............................ CGAATTCACCCAGCTTCATGCCTTCCCCCCGAT 662 28 100.0 33 ............................ CCCTTATTCGTCGTCCGAAGACCCGCTATCCAT 601 28 100.0 33 ............................ CACGACCGTCCGTCGGCCCACCCGCTAGACTTC 540 28 100.0 33 ............................ GCTCGCTCTCGTAGCTCAGCCGGCAGTGCTCGC 479 28 100.0 33 ............................ TTCCTTGACAGTCGCACCACAAGGCCGCGACCC 418 28 100.0 33 ............................ GACGTTCGAGCGCGCTCAGACGATCCTCGATCG 357 28 100.0 33 ............................ CACCGCCGTCATGGCCGTGCTGCTCGCTGCCAC 296 28 100.0 33 ............................ ACAGGTCATCTACCGCGACCGGCAGGAGCTGCA 235 28 100.0 33 ............................ TGCGCACGATAGCACCTCACAAATTGAAACCCA 174 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 33 GGTTCCCCCGCGTATGCGGGGATTGACC # Left flank : GGGCAGGCAAACATCGCAAAACTCCCAGAAAACGGCGCATCAGACCATCAAATCTGGGGGAAATTGTACTCGCAAACAGACAATAACACAAGAAAAATCATGCTGTTATGAATATTTCAGGGGCGACTCTTT # Right flank : CCCCGATTGTTACCGCTAGGTGTCGCATCCCGGATGATTGGATAGTGCCATCACGCCATGCGTACCTGCTGGCGGTAAGCGTTCTGCGCGAGCTGCTGGGCAGCGGGTCAAGGCGTTGACGACCATCATCGGGAGATGCCCTCATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTATGCGGGGATTGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //