Array 1 52913-53686 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJD01000005.1 Campylobacter lanienae strain P0018 .11822_4_21.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 52913 37 97.3 36 .......G............................. TCAAAATCACCAGTAGCATTAAACCCACTAGGTGTT 52986 37 100.0 39 ..................................... TTACTGTATATGATATTGTTGATTGTTTGATTGGTAAAA 53062 37 100.0 35 ..................................... TAGTAGTGAGTTTTTAAACAAAGATTTAGTTAATA 53134 37 100.0 35 ..................................... CCAAATACTTTAGCATAATGATAAGCTTTTTTGTA 53206 37 100.0 38 ..................................... TTAGTAGAAAAAGGCGAGAAAATCAACGAGCAAGAGCT 53281 37 100.0 36 ..................................... TCATTATTTTTAGCAAAAAAGAAAACGCCATTTTTA 53354 37 100.0 35 ..................................... TTAAAATTAGCCCATTGTGTTTAGCACACTCGCTA 53426 37 100.0 37 ..................................... CTAGAGAGAGTTTAAGCGCCTATGGGGATTTATACAT 53500 37 100.0 38 ..................................... TAAAGATAATAAAGAAAATATTCAAGATGCTGAGGTTA 53575 37 100.0 38 ..................................... TTTAGGAGCATTGATAGAGCCGTTGCGTGGTATAGTTT 53650 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.8 37 GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Left flank : ATAGCGTTATAAGAGAGAGAAAACTTCTCTTACTCTAAATCTAAAATAAGAGAAAATGAAGTTAAAAATAAAGAGATTTATTTGGGGAGATGATTAATAGTAATAATACATTATCATAATAATTATTTATAAATCTAAAATTTTTTAAATTTTTGATATTTTTAAATAATTCTATTATTTGTAGTTTGAGTTAATATTTCCATTTTACTCTCCTAAAAATTGTTTAAAAACTTCTCTACATTATCACGCTCAAAATATTAATATTGTGTAGCGATACGCATTAAAATCATCTCTCTCTTAAACTTATCAGCTCGAGCTCATCACTTTGATAAATTTTATATAACGAAGCATTTACTAAATCTATATCATCAAAATTAGCCGCTATACCTAATTCTGGGACAATCTCATCATAAAATAGCTCTATTTGCTCCCCTTTTTTGTAAGCACAATTCTAAAAGCATCTATAAAGTCTTGAGTGTTTGTAAAATTTTTGTATTTGT # Right flank : CCCCGCACAAAATGCCCTGTTTTAGGGATTTTGTGCTTAGTTAATTGTAAAATTTTTTCCACTTAGAAAAAAATCGCAAAAAGTGGCGAATTTGTGGAAAAATATGTTATAATCCAAGCGCAAATTATACCATAATCTAGCTTATAGCGTTTGAAATCACCACAAGGTGTTTTCATATCGGGGCAACTGCCTTTGGCACCCCCGGTTATTCTCTATCGTCACAATAATTTTTAAACTCACATTGCGCACAAGCTGTAATGCTAGCTGAGCTTTGGGGAAAATATCCTTTTTTTAATAGATCTTGAATTTGCGTTAGTGTTTTATCAAAATAAGCTAAATCCTCTTTATAAATTTCAAAGATTTTAAATTTTAGATTATTTGAATAGCATAAAATCACCCTATGAAAAGGCTTTTTAAAGTGCTTACTAGCAAGTTTAGAATATGCTATAAGCTGCATTTTTGCGCCCTTGCTTAAAATTGGCTTTGATTGATTTTTAAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 61668-62833 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJD01000006.1 Campylobacter lanienae strain P0018 .11822_4_21.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 61668 41 95.1 34 ......A.............................A.... TTTTGCAACCAGCAAACATCCTAATCATATCAAC 61743 41 100.0 34 ......................................... TTTTGCAACCTCTAAACATATAACTCATAACAGC 61818 41 92.7 34 ..............T........T...C............. TTTTGCAACCAGTAAACATATTTTCCATATAAAT 61893 41 95.1 34 ...................T...T................. TTTCGCAACTAGAAAACATCCCACTCATCTTAAC 61968 41 90.2 34 ..............T....T...T............A.... TTCTGCAAACAGCAAACATCCCATTCATATCAGC 62043 41 90.2 34 C..................T........A.......A.... TTCTGCAAATAGCAAACATCTGACCCATATCAGT 62118 41 90.2 34 ...G...............T...T...C............. TATCGCAAAGGCAAAATATCCAGCTCATATCAGT 62193 41 92.7 34 .......................T...C...........T. TTGTGCAATTTCTAAACATCTCACTCATATCAGT 62268 41 100.0 34 ......................................... TTTTGCAAAAAGCAAACATTCCGCCCATATTAAC 62343 41 92.7 34 ...................T...T...C............. TCTTAACTTTATAAAACATAGAATTCATATACTT 62418 41 82.9 34 ....T.AGA.....T....T................A.... TTCTGCAAACAGCAAACATCTCACTCATATCAAT 62493 41 92.7 34 .......................T....T.......A.... TTGTGCAACCTATAAACATCTGACCCATATCAGT 62568 41 92.7 34 .G.................T........A............ TTCTGCAACCAGCAAACATCTCACCCATATCAGT 62643 41 90.2 34 C.......C..........T...T................. TTTCGCAACCAGAAAACATCCCACTCATATTAAC 62718 41 92.7 34 ...................T...T........T........ TCTTAGCTTCATAAAACATAAAATTCATATACTT 62793 41 85.4 0 ....T.AGA..........T................A.... | ========== ====== ====== ====== ========================================= ================================== ================== 16 41 92.2 34 TACACTGCTTACATCCCAGCTATCAAGTGGTTGATTGAAAT # Left flank : TAGTGTGGGCTATAGGGCTATTAAGACAATCGGGCAAAATACTTCTTGATGCTAATATGAATGAGCCAATAGTTAGCGAAGTGGTAGATATTTTACGCCTATTTAGAAGTGATATAGAAATCAAAGATCTACACCTTCTAAAAGTAGCAAATGACAAATATACTTGTATAATCTCTCTAAATTCCATTGATCCAATTGATATAAATCTTATCAAAAAAGAGCTATCAAAGCATGAAGAGCTAGTTCATATAATAGTGGAAATATATCCAAAAAAATATTAAATTAAATTTTAATAACAAGAAGAAAATATGAATAAAATTTTAGCTATTATATTATTTACTAGTGCTTGCTAAGCTTTAATAAATAGACCAAAGCAAGTAGCTTTAAAATGGTATCTCATCTTCATCATCATCTTTTTCCATCAAATCATACATATTAGTAAATTTAGGCTTATTCTCATCATTGATTTTGCAATCATCAAATATCCCACTCATTTTAGT # Right flank : TTTTCGCGACCAGCAAACATCCCACTCATATTAGTTACACTGCTTACATCCCAGCTCTCTATACCACTAAAATCTTCACGCCCACTCCAAGCAAACAACTCATTCATATCAGTTATAGCACTAGTATCTATATCGCCTAAATATATATCTTCATCATAAATTAAGCCCTTTAGCTCATCTTTGCTTTGTGGTGCATATAGCTTAATAGGAAAGAAATACTCCATATCCGCTACAGCTGTAATATTATAATCACTAGCAATACTCTTAGCTATGGAGTTATCTTGACAGATGATACCAGCTATCATATCAATTGACAAATGCGTAGGCACAAGCGCCTCAGCCATCATTTTATCTATTTTAGATTGTTTGATGGATCTATCGGCGTGGTTCCAGTCTTTTGACATCACCTCACTCCAGCTGATAAACTGCGTATTTAGCAAGTCGCTAAGCTCATTTGCACATTCATATCTAGCAGCAGTGGCACTAGCGTTAGTAAATAT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACACTGCTTACATCCCAGCTATCAAGTGGTTGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //