Array 1 323-811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKA010000224.1 Saccharopolyspora sp. 6T contig_00224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 323 36 100.0 41 .................................... GGGTGCCCCGTCGCGTCGAACCCGGCAGGCAGCACCGCCGG 400 36 100.0 37 .................................... GCCGAGGCGGGTGACCAGCTCGTCGAACAGCGGGCGC 473 36 100.0 35 .................................... GCGCGCACGGGCGTGCAGGCGTAGAGCATCCCCAC 544 36 100.0 41 .................................... AGGCGTCGGCCCGAGGTAAGCCGCAGCCGCAGCCGCATCCG 621 36 97.2 39 ..............T..................... CTGCCAGGTGAAATTGAGTAGGGCGCGGATCGCCGCGGT 696 36 88.9 41 .............C.......C....C...C..... ATGCACTCGTACCGCAGGAGGACGTACGCCTCCTGCGCCGC 773 36 94.4 0 .....G........T..................... | T,TC [784,805] ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 97.2 39 CTGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Left flank : CACCAGCACCCGGCCGTCCGGGGCCGCCACCACCGTCGTGTTGGCGGGGCGCCGCCCCCCCCCCCCGCCGCGCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCCGGGCCGGGGGGGGCCCCCTCGGCTGGGGCGAGCGGTCCGGTTCGGTCTCGGCCAGGCGTAGCCGCTCGCGTCGAGTTCGCGCAGCTCATGAGCGAGATCGGCATGCGGTAAGATCGAACAACCGTTTCCTCGCGATCTCCGAACGGAACCGCTCGCGACGATCTTTGAAAACCCAGGTCAGAACACCCTTACTGCCGGGTCCC # Right flank : TCCAACAAGGCGACAGTTGAGCCACTGGGAAGCACCTGCATCTGAGCGCGACCCAGCTAGTGTCGAGCGCCGAAGCTCGGCGGTGGCTTCGGGATGGAGGCGGGCGGCCGCGATTTCGGTGGAGAGGTTCCACGGGCGG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCTCTCCGAGCCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.70,-13.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 20519-22378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKA010000141.1 Saccharopolyspora sp. 6T contig_00141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20519 29 100.0 32 ............................. ACGGTGCGCAACGGCAGGGACATGCCCGGCGG 20580 29 100.0 32 ............................. CTGGACATCGCGGGTGAGGTCTACCTAGTGCG 20641 29 100.0 32 ............................. AACGGCAGCAGGATGCCGAGCCCGCCGTAGAT 20702 29 96.6 32 ............................T CACGGGTTCGGCGCGATCGAGGCCAGCAACAC 20763 29 100.0 32 ............................. CAGCAGTAGCCGAGCACCACTTGTTGTTTGAG 20824 29 100.0 32 ............................. GGTACGACACGGGGAGAGACCCGGGTTCGTTC 20885 29 96.6 32 ............................G CGTTCGGTTCCCAGCCCCTGACTCGGGATGCC 20946 29 96.6 32 ............................G GTTCCCCGCGCGCGGTGCGGGGAGGTGCTCGC 21007 29 96.6 32 ............................G GTCTCGGCCAGCGAGTCGACCGGGTCGAGCCA 21068 29 100.0 32 ............................. GTCGGCCAGCACATCCGGCACCTGATGTCCGG 21129 29 100.0 32 ............................. GACATGACCCACCTGGACCGCGAGCTGGGAGC 21190 29 96.6 32 ............................G CATGACGAACGAGGGCGACCCCTGCCCGTCGT 21251 29 96.6 32 ............................G TTCTCGCCGGTGTTGTCCCCGGCGATCATCTG 21312 29 100.0 32 ............................. TCGGTGCCGAGGTCGATCCGCAGGACTACCTC 21373 29 100.0 32 ............................. GTCGCCCAGTGGCTCGGCGAGCGCGTGCTCGC 21434 29 100.0 32 ............................. CCGGCCACGATTGCCTGACGGTGTCGACCTCG 21495 29 100.0 32 ............................. GCCGGGTACCTCGCAGGACGGGCAGGTGATCA 21556 29 96.6 32 A............................ CAGTCCGAGCCGCAGCCCGCCGTTCTTGAAGT 21617 29 96.6 32 ............................G CCGTGGTGCTCGATCTCATCAAGTCGGGCCTG 21678 29 100.0 32 ............................. TCGTCGTCCGGGATGTCGTCCACGAGCATCCG 21739 29 96.6 32 ............................G CGCCACTTGTCGGCGTGCCGCTGTGCGGCGGA 21800 29 93.1 32 .........................A..G CGCTGTTCCCACTCCTCGACGTCGGCTGTCGT 21861 29 100.0 32 ............................. ACCATCAGCGGCGCGCACGAAACCTCCGAGGG 21922 29 100.0 32 ............................. GCATCACGGTCTCCTCGGTCGGTTTCGGTGAG 21983 29 100.0 32 ............................. ACCTCCATCGGCACCTGGTGGTCGAGACCGAA 22044 29 96.6 32 ............................G AGGCAGCGGAGGCTCGCCAGCTTGATCCAACC 22105 29 93.1 32 ...T........................G TCGTAGGGGTTCGTCATCGGAGTTCTTTGATC 22166 29 89.7 32 ...T.T...................C... AGTTCCGACCCGACCGCGACCAGCGCTTTCGT 22227 29 82.8 32 .C.T..........G......A......T AACCTCGTCGCGGCAGTGCTGCTGGATCCGGC 22288 29 86.2 32 ..CT........T...............G ATCCTGCGGTACTCGGCGTGGCGGCGTGGTGA 22349 29 75.9 0 ..CT...T..............A.CA..G | A [22368] ========== ====== ====== ====== ============================= ================================ ================== 31 29 96.3 32 GTTCTCCCCGCGCCAGCGGGGGTGGTCCC # Left flank : ACCGCACTGAGCCTCTCCCGACGTGGCGAGCGCCAGCTAATCTGAATGCAGCATTGTGACCATCACCGGCAGTGCGAGCCGGTTCCCCGCACCAGCAGGGTGGCGGAAACCCTGATATTCTCAGCGCACAATCCTGCTCGTCGCGCCAGCGTGGGTGGTCAGCAGTACGTGAAGACCACAGACCCGCGACGGACCTACTCCTAGACGACATCTTCGACTCCAGGCAGCGATGAAGGGCTGGAAGCAGATCCGCCGATTTCACCGAGCGGAGGCATGGTGATTCGAGCTTCAGACGCCAGCTTGGAAACGCAAAGATCGAGAACCAGCCTCCCTGACCCCACTGCTTCCAGCAGCCGGATCAAACGCGACAACCACGCTGACACACAGACCCGATAGTCTCTTGCTCGTGCTTCCTTCCGTCGGCTGCCACGCACCGCGTTGCACCCTGCCCGGAACGTCTCAAAGGGATAACACCGCCAGATAGGACCAGCTCAGCAAGT # Right flank : GAACTGATCTTGGCCGCTTACGACGGCCGACTCGGAGGCCGGGGGAGCACACCGGACGGCGTGCACCCCCGGCTGAGCCCCACTAAGCGGAGACGCCCGTCGGGCAGGTGCACCGCAACGAGCAGACCGCGTCTACGTGGGGAGAACGCCCAGACGGGTGCACTGTCGAGCACCAAACCGGACCACCCCTGCCAAGCAGGGAACACTCTGACCTACACCAAAAGTAGCCAAAGTGGTCACACTCAGCAGCCCATGACGTGCAGAAACGTTACCTGACCACCCCCTGTAGTCGACCAGTGCCGCCGTGTGGCTATCCTGCCTTTCGTCAACGTTTGTTGCTCATCGACGGGATTGACGCGGATGACACGACGGAAAGAGCAGGGCCCACGGACCGGTGCCCGTTGCCGCATCACCTCGTTGGTGCGGCCGTGGCCGCACTCGGGGTACGGGACATGCACTACTCGCCCGCGATGCGGGACGGGAAGGTCCACGGCTGGTCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCCAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32981-33735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKA010000141.1 Saccharopolyspora sp. 6T contig_00141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32981 29 100.0 32 ............................. TTCTGCTCCCACGCCGCCGAACGCTCCCGCTT 33042 29 100.0 32 ............................. CGGCGTCAGATCTCCTCGGATCCGGGGAAACG 33103 29 96.6 30 ............................G GTTCGAGCAGGGTTCCCATCTCGGCGGCTT 33162 29 96.6 32 ............................T CGCCCGGCAATCCCGCATGGAGCAGGGGCTGC 33223 29 100.0 32 ............................. AGGTCGCCGCGCCGGTTGATCACCGCTGCGAC 33284 29 96.6 32 ............................G CCGAGGCACATCGCCAGTCGGCGCATTTGCGG 33345 29 96.6 32 ......................C...... GGTACGACACGGGGAGAGACCCGGGTTCGTTC 33406 29 93.1 32 ...T.......G................. GGCTCACGATCCGGACCAGGGGGTGAGCCGTG 33467 29 93.1 32 ...T.......G................. GTCCTCGCGGCTCTGCACGAGCCCATCACCGG 33528 29 72.4 28 ...T.......G.........TCCCC..A GGTCGCGATGAGCAAGAAACCCTTGAGC 33585 29 89.7 32 ...T.......G.............C... GGCGATACCTGGCAGGTGCTGGCCGTCGGCCG 33646 29 93.1 32 ...T.......G................. CCTGACCTGGATTTCGACAACGAACTGGATCG 33707 29 89.7 0 ...T.......G...........C..... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 93.7 32 CTTCTCCCCGCACAGGCGGGGGTGGTCCC # Left flank : GACATTCACTACATCCTCGGAGAGCATGATCTACCTAAAGACGAAGTACCCACCGGCGTCGTAGACCTCTGGGATCCTGATGGAAACGTGCCAGCCGGAGTGAACTACAGCGCCCTCGACGAGGACCCCGGCTTCTGATGGCGCACTTCGCCGTGATCAGCACAAGCGACCTGCCCGACGGAACCCGAGGCGCTCTCACCCGCTGGATGATCGAACCCGCACCAGGAACCTACGTCGGCACACTCACCGCCCGCGTCCGCGACTACCTATGGAACGCCGTCCAAACCAGCATCGATCAACAACACGGCTGGGCCGCCCTCATCTACAACACAGACACCGAGCAGGGATACGCCCTTCGCACCCACGGACTCGGCCAGCACCACCGCACCGTCACCGACTACGACGGGCTCTCCCTCATCACCTGGCCGATCGCCAGGGACAACCAGCCCAGCGAAGATAACAAATCAGCATCCCACTGATGTTTCAGCAGCTCAGGAAGC # Right flank : CCCGTCGTGGGTCTTTCGTAGGAACGGTGTCTCCAGCGTGTTGATCAGTAGGTTTCAGCGTCCGTCCAGCGGTCACCGAAGGTGATGACAAAGGCGTCGAGGACTGGATTCCAACGCATCGTCCATCGGGTGCGGCCGGCTCCGGTGGCATCCAGGCTGCGGGTTACAAGGTACAGGCATTTCAGCGCTGCCTGTTCGTTGGGAAATGTCCTCGCACGCGGACCGCTCGGCGATAGCGAGCGTTGAGTGCTTCGATTGCGTCCGCCACTGACTTGCCTGAGGTGACCGAACTCACCAAGAACCCCCGCGCATCCTCGAACTCGGTGTAGACCGGCACAACAAGCCGATCCCGCCCATCGCCGGAGTCGTCTTCCGGTACGGACTCGGCGATAAATGCAAACACTCCGTCCGGGACAGTGTCTCTGCACGCGACCGCTGGCAGATCTTCCGCCACCTGCACCCCGCGCTCGCCGACTTCGCCACCCGGGTCGAGCCCTACC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCGCACAGGCGGGGGTGGTCCC # Alternate repeat : TCCCCGCGCAGGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKA010000045.1 Saccharopolyspora sp. 6T contig_00045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1 37 100.0 35 ..................................... ACACTCGACGAAGTCGAGACGAACGTCGGGGTGAA 73 37 100.0 35 ..................................... ACACTCGACGAAGTCGAGACGAACGTCGGGGTGAA 145 37 100.0 37 ..................................... ACGTCGGTGACCTCGTAGATCAGGTCATCGCTGACGA 219 37 100.0 35 ..................................... CGACCGCACCGAGGTGTGGTTACCGCCGCGAGTCC 291 37 100.0 36 ..................................... CCGCACCGGTGCAGACCGGCTCCTCCGCAGCCGAGC 364 37 100.0 37 ..................................... TTCCTCCGCCTCATCCAACGGTTTTCCTTCGCCGGGG 438 37 100.0 35 ..................................... TCCACCGCGTGGGCACTGATCATCGCGATCGCGAT 510 37 100.0 35 ..................................... TCTCATGAGTGAGGAATCCGCTATCTTGAGGTGGT 582 37 100.0 37 ..................................... AACAGCAACCAGGCTCTCCCGGTTCACTGGACGCTTC 656 37 100.0 35 ..................................... GACTCGATCCGGAGGTCGTACTCGTCCAGCTCCTC 728 37 100.0 37 ..................................... AAGGTCATGCTGATCGCCGGGACAGAAGGGGGCCTCT 802 37 97.3 37 ............T........................ CTCATGCGAGCCACGTACGGGGATGTCAACGATCCCA 876 37 100.0 35 ..................................... GGCAACGTCGGCCCGGACCCGGCCATCGTCGCCGC 948 37 100.0 36 ..................................... CGTTCCACAGGCCGGTGACGATGTCCTTGCCCGCGC 1021 37 97.3 37 ...................A................. GGCGCGTCGTTCGGTGAGGCGCTGAAGATGCTGGGGT 1095 37 94.6 36 ...............G...A................. CACCCGGCGAACCGGGAGGGGCCGCACAGGTAGATG 1168 37 94.6 37 ...............G...A................. CCCTTCGGGCCCGCGTAGGGGATCAGCTCGGCCAGCT 1242 37 97.3 37 ...............G..................... GCCGTCGCGAACCGCAGCGACGGGCCGATCGACTCGA 1316 37 97.3 35 ...............G..................... CTCGGACTCGTGCTCTACCCCACTCTCGCCCAACT 1388 37 83.8 37 .C..........T..G....G.AG............. GACGGCTGGCCCGGCACGAGTGGCCCGTGCGCCGAGC G [1395] 1463 36 86.5 0 ...CT............-........C....A..... | GC [1472] ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 97.6 36 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : | # Right flank : CGTGTGGACGCTTGGGCGGTGACTGGTAGAGGCCAAGATGTAGAGCTTCGTTGACAGGTCGCACCTGCCCTCCTAGGGTTTCCGCTATAGTGGAAATATGGTCGAGGTAACGTGATCGAACTTATTGGTGAACGCCTGGCCTTGCCCTATTTTGATGTTGCGAATTGGCGAAAAGTGGGCTTGCTGGGGAAGTGCCTCTTGCTGGAGTAGAGCTGTGCCAATAGTCGATTCCTGTTTGATCGGTTGGTGGCGATCCGGTGGATTTTACGAGGAGAATCGCCGAATCTGTGCTTTTTCGTGATTCCGGTGTTGAACCGGAAGTGTTAGAGCCGCTTCCGATGGCAGCGTTGAGGAACGAGGCAATAGGCTCTCCCCTGTGTCATCAGGTTGCTGCGGTCGACAGTCGTGGCAGGGTGTCCGACAAGCTGCTGATCAGCTTCCTTGGCTGGCAGCCTGGCGACCGCCTGGTGATCGAACTTGCCGGGAGCCTGGTGGCTACG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 6420-6749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKA010000044.1 Saccharopolyspora sp. 6T contig_00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 6420 37 100.0 37 ..................................... ACGACCGTCGAGCCAGGCGCTGGCCTGCAACAGCCGC 6494 37 100.0 35 ..................................... CCAGTGCCGCACGGTGCGAGCCGAGACGCCCAGGT 6566 37 100.0 37 ..................................... TTCGCTGTCGTCGATCAGCACCTGCCCGCCGATGCGG 6640 37 100.0 36 ..................................... GCCGCCCGCCGCACCTACATCGCAGCCGAGAAGCTC 6713 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : GGAGACGTTGCGCCAGGTGTTCAACGAAGTCCTGGACAACCTCGAGGACCGCGTGGGGGACACCGTTGAACTCGACGAGGACTTCTTCTGGTCCATCCCCCGCGAAGCGCTCTACGACCCGTACGCCACACCTGATCCCGAACAGCTCACCCTCGGTCAGCTGACGTCCTCGTGGGGCTCGCTCAAGCGGATGCACGCCAACGGAGACCACATGAACGGATACACCCTGGTCTGGATCGCCGAAATCCTCCGGGCGCTCGGGCAGCGCGCTCGCTGAACGCGCTGCCCGGAGTCTTTTGGGGCGTTCGCTCCGGCCGCGGCAGTGGTCGGACGATGTGCCGGGTGTTGCCGTCAGAGGTGGCTCCACTGCTCCTGGCGTCGGTTGGGAGCTGGTAGCGTGGCGCGACACGCCTGGGGGTTCCCAGCCGATTCCCGGGCGTGTTGATCTCGGACGTGTAACTTGCCAGCTCCAGCAGGGGTGTTTCCCCTGATCGAGCAGG # Right flank : ACACTCGACGAAGTCGAGACGAACGTCGGGGTGAAGTGGCAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 1079-238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKA010000057.1 Saccharopolyspora sp. 6T contig_00057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1078 37 100.0 35 ..................................... ATCGATCACCACCGTCTCGCGCAGCTGGAGCGCGA 1006 37 100.0 36 ..................................... CAGTCCAACCGACGTGGCCTCTCGGCCGATGGCCGA 933 37 100.0 35 ..................................... TACGCCTAGTCGTCGGTCTCAGACCAGCGGTCGCG 861 37 100.0 37 ..................................... CGGTCCGCTGTGGACTCGGGGGCGTCGGCCGCCAGGT 787 37 100.0 34 ..................................... ACCGGCGTGCCCCGCCGCGCCGCCGACGCCCACA 716 37 100.0 36 ..................................... CCGAACTCGACGGCGTCGTGTTCGCCGACCCCAAGG 643 37 100.0 36 ..................................... CCGTTTCGTCGGACCGAAAGGGTCCTCTGCGGGCGT 570 37 100.0 38 ..................................... CGGTCCGCTGGCGATGAAACGCGGCCGGATGATCCGCG 495 37 100.0 35 ..................................... GACACCGGCACTCCTGGTGAGCTCCGCGGGCAGTT 423 37 100.0 37 ..................................... GACCCGGACACGCTCACCCTCGTAGACCGGGACCCCA 349 37 100.0 38 ..................................... TACTGCTGGGGAGAGGCCACGATCGCCGACGTCGTGCT 274 37 97.3 0 ...........T......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 99.8 36 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : TCGGTGCTCGTGCGACGCACGGCGACGACCAAGGCAGCAGCCTGCGGAAGAACGTCGCGCACGAGCTGGGACACCTCCAACATCCGCAGCCGGTAGAGCTGGTCGGCGGCGTGCTCGGCGGTCTCGTCCGCACGAGCGATCCGCTGCGCCAAGTACCGCGAAGGAACAACCGACAACATGACCTCACCTGCCCTTTCTTGTGGAGTGGTCCGTTCGCGCAGCTTGGTTTCGACGCAGTGCCGGACTCTGGGGAGTGGGGCCAGCGACTGAAGTCCTGCCGACCACGACCCGCTTCTATGAACCAACCGGGGTGGCTGGTGAGTCGGTTATGAAGAGGAGCGGCCTGGAGGCTGGATGTCGGTGACGTCCGATGTATGTTCGGTTCGGAGCCGGTAGCGTGGTGCGACACGCCTAGGGGATCTGAAGTGAATTCCGGGCGTGTCGGTCACAGCCGGATAAAGTAATCCCGTCGAGCGGGCTGTTCTGCCTGATCGACAAGG # Right flank : CCGGGAGGTTCTGCCGACGCTGCGACTGTGAGCAGCCGGTGTGATGCCGACGCGCCAGTGCCGATGGGACGGGACAACAGGTAATCGCTGCGGGTGTGGTTATCTCCGAGGATGGCTTCGTCGTTGCCAGCCGTGGTGTTTGCCGCCGGTGATGTGGGTGAGGCGGTCGGCTTCGGCGGGGTGGAGCAGGTGGAGGGCGTCGTTGTTGCTGGCCCATCGGTGTTCGGCGACTTCGGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //