Array 1 48830-46705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDQ010000016.1 [Clostridium] innocuum strain DFI.4.59 NFPGCBPF_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 48829 33 100.0 37 ................................. CTAACACCATCATAATCGGGATGTTATGCGAAAGCAC 48759 33 100.0 35 ................................. TCGTATCTCGTACTTTGTCCGTACCTCTCCTGTAC 48691 33 100.0 35 ................................. AAATTTTCTGCAGTCATTGTGGTGCAACAATTTAT 48623 33 100.0 35 ................................. ACCTAGATATTTTGTTGCCCTCTGTCCGTGATATT 48555 33 100.0 34 ................................. CCCCATTTTTAAATACAACTACATCACCAATATG 48488 33 100.0 36 ................................. CATGAAGCCAATAAGTGCGTCAACTTCGTTCGGTAG 48419 33 100.0 33 ................................. AGCAGTGGTTAGAACAAGGTCTAATTAAAATAG 48353 33 100.0 36 ................................. GGAAATGTTGGTGACAAAAAAGAAATAAAAGAAGTA 48284 33 100.0 35 ................................. AATCTTTGCTAACCTTTCGGCAATAGTAGTTGCCA 48216 33 100.0 34 ................................. TATCACATCATCACAGTGTATTGTGGTTATTGCC 48149 33 100.0 34 ................................. TGGTGTGGAGGTTTAATCGTCGCTTTGCTGATTG 48082 33 100.0 33 ................................. CAACATGGGTTGACCTAGGAGAAAACGTAGAAA 48016 33 100.0 33 ................................. TAATTCATACTGTTCATCGTCTAATACGATAGT 47950 33 100.0 35 ................................. TTGTCAATCGGCGGAGCTGTTGACGAAATCGAAAT 47882 33 100.0 37 ................................. CACAATTAAAAAGGGTGAAGTAGTACAGTTAATGGCA 47812 33 100.0 35 ................................. ATATAAGGCATGGGTTGCTCAGAATCAAGGACAGT 47744 33 100.0 34 ................................. TCCTGTTATGAGCAGCCTTTTCGTATTGATTCCG 47677 33 100.0 34 ................................. TTAGGCTCCTGCCACATCTGCAATGCCACATTAT 47610 33 100.0 33 ................................. TTGAATACGGCAGCTTCTCTATGATCTCATCCA 47544 33 100.0 34 ................................. GTGGATATACAATGCGTAACCACTGGTTTCTGCG 47477 33 100.0 33 ................................. TGTTAGAATAGGGTATAGAAAAAGTATCGTCTT 47411 33 100.0 34 ................................. TACTAAGTGTATGTATGTGAGAGCTGTTTCTGAA 47344 33 100.0 35 ................................. CCAGCCATCCGCCAGCTCCAGCTCCGCCTCTGTAA 47276 33 100.0 34 ................................. AGTTGCTACTGCTTGTGATGGCGAAGCCCCCGTT 47209 33 100.0 34 ................................. GTCAATGCGAATCAACATGTTGTGACGCATTGGG 47142 33 100.0 33 ................................. CACATCTGAGATATCTGGGGCTCCTGCATCCTC 47076 33 100.0 36 ................................. ACCATACACAGAGAGCTTGCGGAATGCGTCCCTGCA 47007 33 100.0 35 ................................. ATTAACACTTCTTTTCCTTTCTTTCGCAGCTTTAC 46939 33 100.0 35 ................................. TCAAAACGGCGATGCTATCGTTCTGGTCGAACACA 46871 33 100.0 34 ................................. CTGTTTGGTAAGGTGCAAGATATAGTTATATCCG 46804 33 100.0 34 ................................. GTTCTCTTGATACCGCTTCTTGCTCCGCTATAGA 46737 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 32 33 100.0 35 GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT # Left flank : TGAAGAAGGTGTTTTTCTGTTCACAACGAAGACCTGCCCAAATTGTAAAATAGCTGACACCTGGCTGAAAAGCGCTGGAATATCCTATGAAAAAGTGGATGCCGAGGAACAGGCTGAATTAACAAAAAAATTCTCAATTATGCAGGCACCAACGCTGGTCGTATGCAGAGATGGAAGCTGTGAAACATACAGTAATGCATCCAACATTCGTAAGTACATTGATATGATGCAGAAAGCATAAGCAAATAAGAGGATATATTTCATACTGGAATGTATCCTTTTTATGTATTTGGAATTTTTTCTGTTATAATAATAGTAGATGGTTATCCCGCTAAATAATCCAGCGCGAACCATAAGCTCACATGAATTCCCTGGGAGGTTCGCGCATCATTTTGTTCAAATTCACACAAATGTAACAATTTCAACAAAATTTTCATTAACCAAAGTTTTATATTTGTGTAAATTTGTTTCATTTAGGGGATTTCATGGGATTTTTCACG # Right flank : AATCCTTCTAATCAGGTGCTCACTAAGCGATACCCCCTAGTCTCTCCTTAGGCTCACAAACCAAATAATAAACAATACTCCAGTAATACTTTCTCATCACTTACCAGAAGGATTGCTATATGGAGTAAAATCAGGCACCTGTCCATTCACAATCTGTACAACCAACGGTATCTCCGTTTTCGTCTCCAGCTCTGACGTACTCAAAAAAGTTATAACCTGCGCATTCACCTTAACAACAAGTGATATTTTAATCATGGTGTTGTTGATTCCATATGGCTTTGATTCCGTTTTTATCTCTCCTGTAACATCATTCAGCATCCGCATACGCACTCTGATTTTCGGCCCCTTATCATATAAAAAGAAAATATGACTCAGATAACCTGCCGGTACTTCATACAAAACTCCATCCTCATAGAAGACATCCTTCGTCGTAGGATCCTTTTTACCATCCTGTGCAGCCAGCAGTGATTTATCAATCGTATTCAATGCCGAATACAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37173-37670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDQ010000027.1 [Clostridium] innocuum strain DFI.4.59 NFPGCBPF_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 37173 32 100.0 34 ................................ AACTCCATAATATAGCGCATATGGGTTGTATATA 37239 32 100.0 36 ................................ TTCAATGTCAGCGATTGCTTTTTTTACAATTTTTCT 37307 32 100.0 34 ................................ ATCCCTGTGTTGTATCAATCTCCCGTTAATGCAG 37373 32 100.0 34 ................................ CGCTTACCATGTCATAATTATCATTGTCATATAC 37439 32 100.0 34 ................................ CTAGTTTTGTTTGTGATTTAAACGTTATATATTC 37505 32 100.0 34 ................................ ATATAGATATGCGTAATTGTATCCATCATATTTG 37571 32 100.0 37 ................................ TACTTTTAGCAATCGTACAGATACCTGAATAATCTGA 37640 31 84.4 0 .....................-AC....T..G | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.0 35 GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Left flank : ATTTACCTGAATATCCACCGTTTTTATGGAAGTGATGAGAAATGCTTGTTATAATAACTTATGATGTCAACACCCAAAACAGCGCAGGTAAAAAAAGATTAAGGAACGTTGCTAAAGTATGTGTGAATTATGGTCAAAGGGTTCAAAATTCAGTTTTTGAATGTGTTATGGATCAAGCGAAATGCAGAGAGGTTAAACACAAGCTTACTGGATTAATTGATAAAGAACATGATAGTTTAAGATTTTACTATTTAGGTAACAATTACAAAAATAAAGTAGAACATATAGGAGTTAAGCCTAGCTTCAATGTTGAAGAAGATGTATTGTTTATATGAATTATTTTGCGCGAACCGTAAGCTCACATGAAACCCTTGGGAGGTTCGCGCCTTAAAATTGCGTTTTATCGCATTTTGTAACAGCTTTTTCATTTTCATAACATTCAATAGTTATGAAAAGAAATGATTTTGTTACAAACGTCTTAAAATGCAATAATTTTCACT # Right flank : GCTTAGACAAAAAAAGCAAAGCACTCCTTCTAATGCTATATTTTATAAAATCCTACTTATTCTTCATATATGGTATGACTTTAGTAAATCATTGAAACCTCCAAAAAACCTTTATTTATCGTACTTTCGCAAGTTTTAAAAAGTATATACCATTGAATTTATCGTTTTCACGGAAAATTTAGTCTTTTATATGTGCCTATCTGTGAGGTGTAGTGTACCTGTATGTAATTGTATCGGATTACGAGTAAACCAACGAGGAAACGATAGAAATGAGACACTGTACATAAAGTTCCATCAATTACTGTTTTGCAAGTGAATCAGCGTTACTGCAAATTTATTAGCCATTTAAATCTGGATATTTTATTCTATAACGCATACAGTGATGAAGTACATGAAGGTTACATAAAAATATGTACAGAAAAAGAATATATTGATGTGTGTCTTCCTTTTTAAGTGCTTAAAAACTTAATGAGTGCAAAGCAGCATAAAGCTCCAATTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 77089-78759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDQ010000004.1 [Clostridium] innocuum strain DFI.4.59 NFPGCBPF_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 77089 34 100.0 33 .................................. ATCTTTCGCTTCTTTATAATTTCTTGCGTAACT 77156 34 100.0 34 .................................. CTGATGTGGATGCTATAATGTTTGACGAGTTTTT 77224 34 100.0 34 .................................. ATAGCACACCATAAATAACACCGCTAGCTTGTCG 77292 34 100.0 33 .................................. ATTTTGCCAGTATTTAAATACATCGTCTTCTAA 77359 34 100.0 34 .................................. CAACATGGGTTGACCTAGGAGAAAACGTAGAAAT 77427 34 100.0 35 .................................. ATCATCATTGGTACGCCCTCTCTTAGTAAATCCTC 77496 34 100.0 35 .................................. CTTTAAGCGCCGTTACTAATACGAACGCTTATATG 77565 34 100.0 35 .................................. AGTAGGCTTGCTACACTGTCGTTCGTTTTCTCTAC 77634 34 100.0 37 .................................. GTTTGAAGTAGAGACGATAAAGCCTTTGAGTTTGAAA 77705 34 100.0 34 .................................. ATGTCTTCCGTAACTTTACTCTCTGGCAGTTTTG 77773 34 100.0 34 .................................. ATAATACTCCTCTAGATATTGACGCCCACGAACC 77841 34 100.0 35 .................................. AATATCTGTTTGACCATCATAGTTTACTGCATCAC 77910 34 100.0 33 .................................. ACCACTGCACACCAATGACCAGTTAACACCATT 77977 34 100.0 34 .................................. TATCAGATATTTAAAGATGATGACATGTGTGAAA 78045 34 97.1 35 ........................A......... TGTAGGCGCACCCTCACTACTTGTGGCCGGACCAG 78114 34 100.0 33 .................................. CTCCTTAGAAAGTGTAAAAAACAAACAGACAAC 78181 34 100.0 33 .................................. ACCTTTTCCGTATCCTTGAATGTGATTGACAGG 78248 34 100.0 34 .................................. TCTGCTTCAGGATCCGGAGCGGAGCCTGTCGTCG 78316 34 100.0 34 .................................. GCTTCGATGGTGATGGCAGCACCGCCTTTCTTCA 78384 34 100.0 33 .................................. CATGAGGTCATTCAAGAAGTCAGCACTGAATAC 78451 34 100.0 35 .................................. ACATCAATTCCTGTACCGCCACGTATAATCTTTGC 78520 34 100.0 33 .................................. TTCCTTCGTCGGTTTTCGTTTCCCTGCCGCCAG 78587 34 97.1 37 ........................T......... TGAGATTTTAGAAATCATTGCAACTTACATTCCAGAC 78658 34 94.1 35 .C......................T......... TTCCAGCCTTTATCGACAATATGATCGAATTGTCC 78727 33 76.5 0 .C..........TT.A.......GC....-...C | ========== ====== ====== ====== ================================== ===================================== ================== 25 34 98.6 34 GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Left flank : ACTTGGTGCTATGTTAGGGGATCCTATTGTAAAGTCATACACGGCTTTCCCACTAGCCAGCATGTTTTGTTTTTCTTCATCAAGCCTGCTGAAAACACCTTCCGCAAGTAAATCCATTCGTTTGGAAAATTTCATATTCTCCCTCTTTCCTGATATTTCATATTTCTCTCATTATAAAAGAAAAGACCGGTCCCTTCAATAGCTGATGGGTGAATTTCACAACCTTCGTATGGTGTACACTAACAGATTCTAAAAACTGACCTCAATTACATTTTTGTTTAGCACTTTGTAAAGTTTCTGTTATAATAAAAGTAGAGATATCATATCCACTCACATGTTCTTTGCGCGAACCCCAAGCTCACATGATTTTCCAGGGAGGTTCGCGCCACATAATTGTGTTTTAAAACAAAATGTAACAATTTACAATAAAAGTACGATAGATAATTAAATGTAAATAATATTTTTTGTTACATTCGGAGTGGTTTATCACAAATCTCGCA # Right flank : CAGCTCAGTACAGATTTTGCATTCCTACACACTACTTCCCATCCAATACCATTTGCAATCTCTCTCTAAACAGCGTACAATAAACACATAAAGTAAACGCTTACAGGAAGGAGATTTTTTATATGAAATATGTATGCGAAATATGCGGCTACATGTATGATGAAGCTGTTGAAGGCACCTCCTGGGTCAACCTTGATAGCACATGGAAATGCCCGCTATGCATCGCTCCAAAGGAATGCTTTAAAAAAGTAGCATCAGAGGAAGACGCGTCAGCTACATCCAAAAGCAACGATGCCACCTCCCTTGCCATACAGAAAAATGCCAAAAAGGAAGACACCCTGGAAACCAGCATGTCCCTCATTCATGAAATGGCTATTCACAACGCCAGCCGTATTGAAGCAATGCGCACACACAAATCCGTACCAGGATGGGACGACATCCTGCTATTAGGAGGACAACTCGCTCACCCGCCACTTGCTGATAAAGCTGATGTTGATACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2582-3142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDQ010000053.1 [Clostridium] innocuum strain DFI.4.59 NFPGCBPF_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2582 32 100.0 33 ................................ TGGTGTGAGGGTTTAATCGTCGCTTTGCTGATT 2647 32 100.0 36 ................................ TGCTCAGTCTGTGTTTAATAGAATTAATACGATTTT 2715 32 100.0 33 ................................ CTACATGGGTTGACTTAGGAGAAAACGTCGAAA 2780 32 100.0 34 ................................ AATAATAAATTCGTCAAATATAATAAGGTTAACT 2846 32 100.0 33 ................................ ATCATAATTGGGGTGTGGCTGATGAATGGGCGT 2911 32 100.0 35 ................................ TTTTAGTTTATCTCCAAACATCATTATCACCACTT 2978 32 100.0 33 ................................ TCCTATCACTCCATTAAATTCTAACTCGCTACT 3043 32 100.0 36 ................................ ATGCAGGTTTGGATTTGGGTGTGAAATATGGATCGA 3111 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.7 34 GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Left flank : AATGCTCACAAATACGGATTCATTTTACGTTATCCCGAGAATAAAACAAATATAACAGGGACAGCAAATGAACCGTAGCATTTCCGTTATGTAGGAACTGAAGCCGCTACAGAAATGTACCGTAAAAATCTGTGTCTGGAAGAATATACACTGCAGCATGGTTTCTCATATCCCGTTTCAATAAAGCGCTGATAGCAAATGGATGATATTCATTATGAACCGTCCAGTTATTTTCCTATGAGGTCAATAAGATTTTTATTTCATACTGGAATGTATCCTTTTTATGTATTCGGAGTTTTTTCTGTTATAATACTAGTAGATGGTTATCCCATTAAATAATCCAGCGCGTACCATAAGCTCACATGAATTTCCTGGGAGGTTCGCGCATCATTTTGTTCAAATTCGCACAAATGTAACAATTTCAACGCAATTTTCATTAACCAAAGTTTTATAATTGTGTAAATTTGTTTCATTTAGGGGATTTCATGGGATTTTTCACG # Right flank : TTTATTATAAGATTTCCCATTATCCTATGAAAAAATACGATTTCCTTTTGCCTGACAGTAACGCAAGATCATTACAGGCTTAAGAACATCGTATTTTTTAATTCATTTTGTTTATCCGCTCTTCTTTTCGAATGTGCGCTTTAGCTGTTCCATAAAAACAGCAAGGACAGCAATATCCGCAGGATTTACACCCGAAATACGGGAGGCCTGTCCCATCGTCAGAGGCTGTACCTTATTCAGCTTCTGTCTTGCCTCCAGTGACAGATTCACCACCTGATCATAGTCAAACCGCTCAGGCAGGCATACCTTGTCCATCGCCCGCAGATGTTCCGCATCACGCTTGGCTTTTTTTATGTATCCCTCGTAGCGAATCTCGATTTCCACAAGCTTCGCAATCGCAGGATCAAATTCGCGTTCCAGATAGGGCTCTAAAAGTGCGATGGTAATTCCCGGTCGCTTCAGCAGCTCTGCAGCACTGATCCCCTCCTTCAGCACATCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //