Array 1 274223-273218 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUY01000002.1 Pseudomonas aeruginosa strain A10 IPC689_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274222 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 274161 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 274100 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 274039 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 273978 29 100.0 32 ............................. GCGCAGCTCGATCCTGAGCAGGTCGATGCGTA 273917 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 273856 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 273795 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 273734 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 273673 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 273612 29 100.0 32 ............................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 273551 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 273490 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 273429 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 273368 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 273307 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 273246 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTCGACTGTCGGCACCTTGCTGGTGTGGGTCGGTGAGGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283575-282815 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUY01000002.1 Pseudomonas aeruginosa strain A10 IPC689_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283574 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 283513 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 283452 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 283391 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 283330 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 283269 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 283208 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 283147 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 283086 29 100.0 32 ............................. CTGCGCGTTCACGCCGAAACCCTTGGCTGGGT 283025 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 282964 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 282903 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 282842 28 79.3 0 A..........A..C.....-..A....T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 172992-174260 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUY01000015.1 Pseudomonas aeruginosa strain A10 IPC689_15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172992 28 100.0 32 ............................ AGCCGCTGGAGCAGGAACCCGAACTGCTTGAG 173052 28 100.0 32 ............................ GTCTGAACAATTGATGAAACAAATATCAAGCT 173112 28 100.0 32 ............................ CGTATCGCCTATCACCGTGAGCCAATAGTCCA 173172 28 100.0 32 ............................ TGTCGCGATCTTGCAAACACAGCTCGATTTCT 173232 28 100.0 32 ............................ GTTGGGCCGGTCTACTCGATGACGTAGAGATC 173292 28 100.0 32 ............................ GTGAACGCACCCGGGCAGGATTGAAAGCTGCA 173352 28 100.0 32 ............................ TTGGCATCGTTCGCCGTAACGATGGTGCCGAC 173412 28 100.0 32 ............................ TGCGGGGCGTGCGATGCAAGCGGTCTATGGCG 173472 28 100.0 32 ............................ ATCATCCCCGGGTCGCATGGCGGATATGTTGA 173532 28 100.0 32 ............................ TGCAACACTCGTCCCCTTTCCGTCTCTGTTCT 173592 28 100.0 32 ............................ GTCATTGATGGACACCTCGCGCATTTCATCGA 173652 28 100.0 32 ............................ TGAACGGTGGCGGCCTCGGCCAACTGCTCCAG 173712 28 100.0 32 ............................ TGCATCAGTGATGATCGTGCGATGCAAGTGGA 173772 28 100.0 32 ............................ AGGGCCTGGACCTTGGGCGCCTGCTCGATGAT 173832 28 100.0 32 ............................ TTTGCCGTGCGCTTGGCCTGAACACGCTTCTG 173892 28 100.0 32 ............................ TTTCCGACGACGCACTGCGCGTTGATATGTCG 173952 28 100.0 32 ............................ TGTCGAGGCTCTATGATCAATGCGAGTTTCGG 174012 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 174072 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 174133 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 174193 28 85.7 8 ...................C..GT.G.. CCGCACGT TTCC [174215] Deletion [174229] 174233 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 184190-182784 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUY01000015.1 Pseudomonas aeruginosa strain A10 IPC689_15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 184189 28 100.0 32 ............................ AGACCGACGTGATGTCGAAGGCCGACACCGCA 184129 28 100.0 32 ............................ GCTGAGTTGTGTCAGGATCGAACTCTTCCAGA 184069 28 100.0 32 ............................ TATCGCCTTCTCTGGCAGCCCAACCGTGAACC 184009 28 100.0 32 ............................ TGCTCAGGGCAGGGGTACTCGGCGATGGTGCG 183949 28 100.0 32 ............................ TGATCAGTAACGCTGGCGTTGAACCAACACAT 183889 28 100.0 32 ............................ ATAGAGCGGATACGTCCGTTGAACATTGCTGG 183829 28 100.0 32 ............................ TCCGGCCGCTCCGCCTCTGCCTGCTCGGCGTG 183769 28 100.0 32 ............................ ATCGGCGAAGACAGGCCGACCATCAGCAAGGC 183709 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 183649 28 100.0 32 ............................ AGCGTCGCCCGTTGGGCAGAAATGTTCAATCG 183589 28 100.0 32 ............................ TGGTGGCGAAGATCGGCGCTGAGGCTGTAGCG 183529 28 100.0 32 ............................ TTCCTCAACGCCTCCAGCATCTCCCGAATGTC 183469 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 183409 28 100.0 32 ............................ TCGTCAATCATCGCGGGGTCCCAGCGATACAG 183349 28 100.0 32 ............................ GTGCCGCTGGCGTAGTTGACCGCATCGACGCG 183289 28 100.0 32 ............................ TTACGGTGCGGCAATAACGAACCCCGCTCCGG 183229 28 100.0 32 ............................ TGGACGACTCGACGCATGACCAGGTCCAGGAC 183169 28 100.0 32 ............................ CTGTTGCATGGCGGTCACGACCAGCCCAACAA 183109 28 100.0 32 ............................ TCACCACCCCGCGCCAACAGCCCAAGCCCGGG 183049 28 100.0 32 ............................ ACCCACTGACGCGACGCCAGGACAATACTGGG 182989 28 100.0 32 ............................ AACAGGCATTCACTGGGTCGTCATCGACAGCC 182929 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 182870 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 182811 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAAGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGTCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //