Array 1 114260-111728 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIL01000015.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_72 contig0014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114259 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 114198 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 114137 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 114076 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 114015 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 113954 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 113893 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 113832 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 113771 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 113710 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 113649 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 113588 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 113527 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 113466 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 113405 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 113344 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 113283 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 113222 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 113161 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 113100 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 113039 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 112978 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 112917 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 112856 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 112795 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 112734 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 112673 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 112612 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 112551 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 112490 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 112429 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 112368 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 112307 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 112246 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 112185 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 112124 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 112063 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 112002 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 111941 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 111880 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 111818 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 111757 29 96.6 0 ............T................ | A [111730] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132009-130883 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIL01000015.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_72 contig0014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132008 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 131947 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 131886 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 131825 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 131764 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 131703 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 131642 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 131581 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 131520 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 131459 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 131398 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 131337 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 131276 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 131215 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 131154 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 131093 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 131032 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 130971 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 130910 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //