Array 1 450478-452580 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPA01000053.1 Salmonella enterica strain NGUA-28_S4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 450478 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 450539 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 450600 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 450661 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 450723 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 450784 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 450845 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 450906 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 450967 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 451028 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 451089 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 451150 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 451211 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 451272 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 451333 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 451394 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 451455 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 451516 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 451577 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 451638 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 451699 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 451760 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 451821 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 451882 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 451943 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 452004 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 452065 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 452126 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 452187 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 452248 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 452309 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 452370 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 452431 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 452492 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 452553 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 470213-472133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPA01000053.1 Salmonella enterica strain NGUA-28_S4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470213 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 470274 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 470335 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 470396 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 470457 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 470518 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 470579 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 470640 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 470701 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 470762 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 470823 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 470884 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 470945 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 471006 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 471067 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 471128 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 471189 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 471250 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 471311 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 471372 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 471433 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 471494 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 471555 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 471616 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 471677 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 471738 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 471799 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 471860 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 471921 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 471982 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 472043 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 472104 29 100.0 0 ............................. | A [472131] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //