Array 1 2352718-2353235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCHH010000001.1 Pseudomonas aeruginosa strain 239 Pseudomonas_aeruginosa_Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2352718 29 100.0 32 ............................. GGCGCCCAGGATGCACCACGCCTGCCGACGCC 2352779 29 100.0 32 ............................. CCGGCGAACGGCAAGCTGGTTCTGGCCAAGCG 2352840 29 100.0 32 ............................. TGAAGACCGCCAAGGGCAAGGCCACTACCCAG 2352901 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 2352962 29 100.0 32 ............................. TCGATGCGAGACTCCAGCCCGGTACGAGACAT 2353023 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 2353084 29 100.0 31 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCG 2353145 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 2353206 28 75.9 0 A..........A..C..-.....A.C.T. | C,A [2353210,2353229] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGTTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGAGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATCGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2362406-2363472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCHH010000001.1 Pseudomonas aeruginosa strain 239 Pseudomonas_aeruginosa_Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2362406 29 100.0 32 ............................. ACTCTGACCTTTCTCGCCGTTGACGCTGCCGA 2362467 29 100.0 33 ............................. CCATTGGCGGCCGAGTAGACTTGGAGTGCGGTT 2362529 29 100.0 32 ............................. TATCAGGGGCGCTCCCATATCCTTGCAAATGA 2362590 29 100.0 32 ............................. GCTGAGACCTGGGCAACCTGCCATGTCGATCA 2362651 29 100.0 32 ............................. GCGTTCATGGTCGGCACGTTCGAAGGCATCAC 2362712 29 100.0 32 ............................. GCGCTACGGGTGGCCTACCAGGGCGAGCGGCC 2362773 29 100.0 32 ............................. TTTTCGCAGGTCGGCGTCGCTGATAGCGAAAA 2362834 29 100.0 32 ............................. GATCGGCAGCAGCTCTTCGGGGCACTTCATGA 2362895 29 100.0 32 ............................. GCGTTCGCCGGCAGATGGGCGACTTCGGCAAG 2362956 29 100.0 32 ............................. TCGGGCAGGCCGTCGTATCGTTCTTCGTGATC 2363017 29 100.0 32 ............................. ATCGATGCGGCGAACGGGACAACTACGGTCAT 2363078 29 100.0 32 ............................. GACGCGAAGGCTTGGGTAGATGGCTATCACGC 2363139 29 96.6 32 ...........G................. TTGCGCTGGTAGCAGCCTGGAGAAAATACCCC 2363200 29 96.6 32 ...........G................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 2363261 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 2363322 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 2363383 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 2363444 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3829370-3830777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCHH010000001.1 Pseudomonas aeruginosa strain 239 Pseudomonas_aeruginosa_Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3829370 28 100.0 32 ............................ TGGTACGTTTTCCCAGACGACAATGGTCTCGT 3829430 28 100.0 32 ............................ TGCCGATCTTGCGCGTTTTGAGGATCGAGCAA 3829490 28 100.0 32 ............................ ATCGGCTTCACCAGCGCAGGCCAGAGAGGAAA 3829550 28 100.0 32 ............................ GAGCGGTTGCCGGTGTTCGACGCTGCCGAGTA 3829610 28 100.0 32 ............................ GCAGGGTCGCGGCTTCTTCCACATCGTCGAGA 3829670 28 100.0 32 ............................ TGACTCCTCGCAAGAGCCGCTTCTTTCTCCTC 3829730 28 100.0 32 ............................ AGGAACGCCGCAACGACCAGGACCACGCATGC 3829790 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 3829850 28 100.0 32 ............................ GCAGTCCCAGCAACAGCAATCTAGGCCGTCTC 3829910 28 100.0 32 ............................ TCCGAAAGGAGAAAGACGATCGCGAGGCGCGC 3829970 28 100.0 32 ............................ TGACAGGCAGGAGGACAGAATGAGCAAGCATA 3830030 28 100.0 32 ............................ ATGTAGAGCGACCTGAAACCACCCACTGGATG 3830090 28 100.0 32 ............................ GCGTGACCTGTTGCATGTAGCACTGGCAGACC 3830150 28 100.0 32 ............................ TATTCGCCACCAGTATCTGCCCTGCTTGCGGC 3830210 28 100.0 32 ............................ AGCTTTCTCAGCCATTTCCGAGGCGCAAGATA 3830270 28 100.0 32 ............................ ACGAGATTCTGTGAAACCACATTGGATATAAG 3830330 28 100.0 32 ............................ GACAGCCTCTGTGGCGGCGTAGTAGCCGCCGA 3830390 28 100.0 32 ............................ AGCGTGACCCGCTCTTCCTGGGCCTGCTTGAA 3830450 28 100.0 32 ............................ AGGCGTTCTCTGTCGGGTTCGGTCTTGTCGCG 3830510 28 100.0 32 ............................ AACCTGCGACGCTGAAGGCTTGGCATGGAGTC 3830570 28 100.0 32 ............................ ATGCCCAGCCTGCCGAGGTTACGACCTTGAGC 3830630 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 3830690 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 3830750 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3841077-3839301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCHH010000001.1 Pseudomonas aeruginosa strain 239 Pseudomonas_aeruginosa_Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3841076 28 100.0 32 ............................ ATCGTGCCGGATAGCAGCAGGACGCCCAGGAC 3841016 28 100.0 32 ............................ GAGTAGTCGCCGGTGTTCGACGCTGCCGAGCG 3840956 28 100.0 32 ............................ AATCGGCAGCCGAGGTCAGCGGCAAGGAGTCC 3840896 28 100.0 33 ............................ CTAGCGGGATTCCGAGGAGCTGGAGGATCCAAA 3840835 28 100.0 32 ............................ TGAGCAACTCCTGGCGGACTGGATAACGACCC 3840775 28 100.0 32 ............................ TGACCAAGGCCGCCCAAGTCCTGATCTTCGGC 3840715 28 100.0 32 ............................ ATACCCCGTAGGGTACAGGACTGTCGAAAGAC 3840655 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 3840595 28 100.0 32 ............................ TAAGCGCCCCCTTGCGGGTTGGCTCAGGCCCT 3840535 28 100.0 32 ............................ AAGAAACAGCGCCTGTTCGTCGACGAGTACCT 3840475 28 100.0 32 ............................ ATGCGGGCGAGGGCGGTCTGGGAGAGCAGGCC 3840415 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 3840355 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 3840295 28 100.0 32 ............................ ATCAAGTCCGAACTGGGCAATGACGGGTTCAG 3840235 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 3840175 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 3840115 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 3840055 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 3839995 28 100.0 32 ............................ TCGGACTCAGGCGGACTTGCGCCAGGCCATGC 3839935 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 3839875 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 3839815 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 3839755 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 3839695 28 100.0 32 ............................ AGTCCCTGGGCAAGCGCCTGATGCCCGGCGTA 3839635 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 3839574 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 3839514 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 3839454 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 3839394 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [3839370] 3839328 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTAGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //