Array 1 248731-251636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHWV010000003.1 Xanthomonas sp. D-109 D-109_0000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 248731 28 96.4 32 ............A............... TTGTCGGTGTGAATGTAACCTCGCATCTTGCA 248791 28 96.4 32 ............A............... ACCCTGTCTTGCCCATGGTCGTTCCGCACTGT 248851 28 96.4 32 ............A............... TGCAACTGCTGGAAGTGCTCATGCAGTACACG 248911 28 96.4 32 ............A............... GGGGGGTGCCGGGGGCTGGGGTGTCGGTAAAT 248971 28 96.4 32 ............A............... TTGGCACCAAGACCAACGCTGTGTTGTTCGGT 249031 28 96.4 32 ............A............... ACACCATGTCCTCGGGGTAGAGGCTGTAGCCC 249091 28 96.4 32 ............A............... TGGATCGATGCCAGCGCCGACAACGCCCGCGT 249151 28 96.4 32 ............A............... GCTGGAGCGATTCGCGAGAGGCGATGCGTGTC 249211 28 96.4 32 ............A............... CAAGACGCGTTTCATGGACGACCACGGCAACG 249271 28 92.9 32 ............A....T.......... TGGACCGCCCCCATCTACGACGGTGGTGCGCC 249331 28 96.4 32 ............A............... ATGCGCGACGATAGAGACCCTGGCACCCTCGA 249391 28 96.4 32 ............A............... TAGCCAGTACCACGCGCGCCGTGAAGCAGCGC 249451 28 96.4 32 ............A............... ACTATGAAAGTCCAAATCATGAGCAGCATCGT 249511 28 96.4 32 ............A............... ACTTCAGCAAGAAGCTGCGCGCCGCGCTGTAC 249571 28 96.4 32 ............A............... ATAGGATAGGGAGACCGCAGGCCTAGCGACTC 249631 28 96.4 32 ............A............... TACCACAACGCCGGCGCTCGGGACGTGGTGGA 249691 28 96.4 32 ............A............... AGCGGCCATTGCGTGAAGCTGAAGCCGCCCTG 249751 28 96.4 32 ............A............... ACTGCGCAACGGCGGCCTTGCCAACGGGCGGC 249811 28 96.4 32 ............A............... TGCAGCAGCCCGCGGAGGCGCGTGCCGCGTGA 249871 28 96.4 32 ............A............... TCGACGGGCGCAAGACGCAGACGCGGCGCGCG 249931 28 96.4 32 ............A............... TGATGTTCAACCCGCCGCACAGCGCCGTGCGA 249991 28 96.4 32 ............A............... TCGCAAAGGTGGAAGCCGAGTACGCCACGGCC 250051 28 100.0 32 ............................ AGTATCGAGGACAGCGAACACGCGGCGGCGCC 250111 28 100.0 32 ............................ GAATGCGGCCATGAGTTCTTGGAGGTCGCACA 250171 28 100.0 32 ............................ TCAAGCCCAATGCTAGCGTCATCCTGATTCAG 250231 28 100.0 32 ............................ TCCCCCCGTCCGCTACCTGGGCACTGCTGCTC 250291 28 100.0 32 ............................ AGCGTCGTGACGTTGGGCGCGGTCTGTCTTCG 250351 28 100.0 32 ............................ GAAACCCCTCTGCAGCAAGCGATTCGCGCCGC 250411 28 100.0 32 ............................ TTGGTGATGTCGATCTGAGACGCCACGCAGTG 250471 28 100.0 32 ............................ TTGGGATCACGGGCAGACGTGCACTAGTCGCA 250531 28 100.0 32 ............................ TAACATGCCCATGATCATCGGCGCGCTCGTCA 250591 28 100.0 32 ............................ AAGGATCGGCCGGAGTCGCGCTGGCGCCAGGA 250651 28 100.0 32 ............................ TTGGTGGGCGAATGCAACAGGAATCAGCGGTG 250711 28 100.0 32 ............................ ATGGCGTGGCGCTCAGGCCGATGTGCAGGCAG 250771 28 100.0 32 ............................ ATCACGAGGGCAGCATGAACGCACCGCAGATC 250831 28 100.0 33 ............................ TGGCGCCATTCCTCACTGTAGTTCGACACCTCG 250892 28 100.0 32 ............................ CACAAGACCGTGCACGCCTACCCAGGCGGCAG 250952 28 100.0 32 ............................ TGCAGGAGAATCTGCGGGCGGCCGACGCCGCC 251012 28 100.0 32 ............................ ACGCCGCAGCACCCAAACAACAAGCCTCTCGC 251072 28 100.0 32 ............................ TACGCGTAACGCATAGTTGACCATGACCCATA 251132 28 100.0 32 ............................ AGCCTGTTAGGCACTGACTTCAGTCTGCCCAT 251192 28 100.0 32 ............................ AAACAGCAGCGCGCAGAGATGGCAGAGCAAGC 251252 28 100.0 32 ............................ TTCACCCGGCGCGGCCGTTCCTGCTCGGACCA 251312 28 100.0 32 ............................ ATCATGGCGCCGACGCCGTCGAGCGACTTGTT 251372 28 100.0 32 ............................ TGGCCGCGCTCTACGGGATTTTCGACGACAAG 251432 28 100.0 31 ............................ TTACCTTTAAAGGGCTGTAAAGGGCCTTTAG 251491 28 96.4 32 ........................A... ACGCACGTGATCGAGCAGTTGGTCGACCGGAC 251551 28 85.7 31 ...........C............T.GT TGATCCACAACATCGACCGACTAAAGATCAT 251610 27 82.1 0 ............AC....GA...-.... | ========== ====== ====== ====== ============================ ================================= ================== 49 28 97.6 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTACACAGCCTGATGGCGGCCGCCTGGCTGCGGGGCATGCACGATCATTTGCACATTGCCGACATTGCCGAGGTGCCCGCCACTGCACAGCATCGGCAGGTGACGCGCGTCCAGGCCAAGAGCAGCCCCGAACGCCTGCGCCGTCGCGCCATGCGCCGGCACGGCTTGAGCGCCGATGCGGCAGCCGAACGTATCCCGGACACCGCGGCCGAACGATTGCGGCTGCCGTTCGTGGTGCTGGGCAGCCGCAGCACCGGCCAGGCCGCGTTCCCTTTGTTCGTGCGGCATGGGCCCCTGCTGCAGGAACCGGTGGCTGGTACGTTCAACAGCTATGGGCTCAGCCATGGGGCCACCATTCCCTGGTTCTGACCCTTTTTCCAAGGCACGTCGAGTGCCCTATTAAATCAAGCACTTGGCAGTCGGCTCCAGCAAAGGGGCCGGCTGCTTTTCTTTGCAGATTTCCTTCTTCTGTCAAAGACTTGGAGAATGGCGAGGCTA # Right flank : ATCGGCCAGTCCGCAAGGCCTGAGACCGTTAATGGCGTTGGCCGCAGCGAAGCGTCGTTTGAAGTCTTTTTTTCGCTTTCGCAGCAGGCGCCCTTCTCCCAGGCAATAACGTTCCAAGCCACGTGCGCGACAACAGAGATTGCTCGCCTATCGGCACCATGCTACGGTCCGTCGGCCCCACTCAGGAAGTGGAGTTCGTCGTACGCAAGTCAACATGGAGAGTGACATGAAGCATTGGACGTCGGTTTTCCTGGTTGCAGTTGCCTGGCTGGGAATCAGCAACCCGGCACCAGCGTCGGACCTGGTGAGTCTCTGCATCACGTGCAACACACCCGCCTCGTTCCAGAACGCCGCCAAAGCCGAAATCGGTCGCGTTGGAGGCACCTACGATGTTCTGGTGGTCAATCCCGACACCAAGACCACGATGCTTTTCTCGATCCTGTTCAACCCGAACGCCGGCGGCGGAAGTCCACAGGCCCAGACGGGGCCGAAGGCCGTTG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 253612-256695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHWV010000003.1 Xanthomonas sp. D-109 D-109_0000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 253612 28 100.0 32 ............................ AGCGAGAAGCAGGCGTACGAGGTCTATCGGCC 253672 28 100.0 32 ............................ CTATCGCGGTGGAGCCGCACCCTACCAAACCC 253732 28 100.0 32 ............................ TTGACCTCGGGGAGGCTTGCCGGGACGCAAGA 253792 28 100.0 32 ............................ TGTTCAACCGCGAGTTCACGCTCGAAGACCTC 253852 28 100.0 32 ............................ TTGATCGTGATGCCGGTCACGGCACCATTCTC 253912 28 100.0 32 ............................ TCTTGATCCAACTCAAGGCCCAGCCCGGCGAA 253972 28 100.0 32 ............................ AGCACTGATCGCCACATCGCCTTTTCCGCTGG 254032 28 100.0 32 ............................ AACATAACCGGAGCATGCCGCCATGGCACACC 254092 28 100.0 32 ............................ GACATGCAGGCCGCCGAAGGCCGGAAAAACAA 254152 28 100.0 32 ............................ AGTACGCACGGCGAAAGAGGCATTGGCCGACC 254212 28 100.0 32 ............................ TTTTTCGTTATGACCGGAACAGTTCTGCTCGT 254272 28 100.0 32 ............................ ATCGCCCGACGTTGCGACGTTCGACATCCGTA 254332 28 100.0 32 ............................ TAATCGGAAATTGAGCATCACCACGCCGAACC 254392 28 100.0 32 ............................ ACAGGACGCCCCTAAGCGATACGGGCGCATGG 254452 28 100.0 32 ............................ ATGACTCAGGCCGCGGCCTTGGCGCGCGCGCC 254512 28 100.0 32 ............................ GTCTGCGCAACGCTGGCCGGGCTGACCGGAGA 254572 28 100.0 32 ............................ AATGGGCGCGCGGCCAAGAGTTCCACCGAGAC 254632 28 100.0 32 ............................ TGCTCGCCATCGCCATGTGCTGGGCACGCGTT 254692 28 100.0 32 ............................ TCTTCCAGCGACAGTTCGCCGGTTTCCCCATG 254752 28 100.0 32 ............................ GCATACGTTCTGCCGGCAAGCAGCGCGGTGTA 254812 28 100.0 32 ............................ TGCATGTTAAGCACCACCCGCGGCACCTCCAT 254872 28 92.9 32 ...........C........T....... CGCGGGCGCCTGAGCAGCGCCGCGCCGGCTCA 254932 28 96.4 32 ...........C................ TTGATGATGTCGCCACGCACGGCGGCCTGCAA 254992 28 96.4 32 ...........G................ AGGAGATGGAAGCGACGACAAACGCGCTCCAG 255052 28 92.9 31 ...........C..........A..... GGTCGCGACTTCGACCCCCAGGGGCGGGGCT 255111 28 92.9 32 A..........C................ CTAGTTCCCCGAACGCGGCAGTGAGGGCCGGA 255171 28 92.9 32 ...........C......T......... CGATGCCAGTTTGCGTGCCTGCAGCTGGCCAC 255231 28 96.4 32 ...........C................ ACGCCCGCGTCCTGCGCGGGCGCATGGACGCC 255291 28 100.0 32 ............................ AAGACCTTGAATCCTTCGGGGGTCTCCTTGAT 255351 28 100.0 32 ............................ CAGATCTTCGCCACCTCGGCGCGCGCCTCGTC 255411 28 100.0 32 ............................ GGGCATCACGACAGGCCTGCGCGAGCTGGACG 255471 28 100.0 32 ............................ TCCTTGCCGAACCCGTGCGCCGGCATCAAGGG 255531 28 100.0 32 ............................ ATGCGCTGGGTGGCGAAGCTCGGGCCGACTGT 255591 28 100.0 32 ............................ ACCAAGCCGAAGGACTGAGACGTGCCCATCTA 255651 28 96.4 32 ................A........... AAACGGGCAGACCTTAGCGCCGCGTTGATCCT 255711 28 100.0 32 ............................ TACCGCAACCGGTGCCGGCTCGCATCGGACCG 255771 28 96.4 32 ....................T....... TACTGCCGGGACGGCGACGGCGGCTAACGGAC 255831 28 100.0 32 ............................ AGCGCCTCGGGGGTGATGGTTGGGGTCATGCG 255891 28 100.0 32 ............................ GTCGCAGGTCGTCTGGCGTCACCGACAGGTGA 255951 28 92.9 32 .G.........C................ TGCAGCCAGTGGCCGCGAGGGTAGTTGCCATA 256011 28 96.4 32 ...........C................ TCAATGCGCGAGAGATAGGCAACGTCGGGCGC 256071 28 96.4 32 ...........C................ TCGCTCTCCGAGTCCAGCGCGCAAGCGCTGGG 256131 28 100.0 30 ............................ TCAGCACCGGCGGCGCCGTGTCCGCCCGCG C [256156] 256190 28 89.3 32 .G.........C............A... ATCGACTTCGCAACGTAGGCGTCGGATTCTGG 256250 28 92.9 32 ...........C.....T.......... CGTATAGCTCACACAGTCGCATGAACGCCTGC 256310 28 96.4 32 ...........C................ AACGACTGCAGGCGCTGAAGCATGGAAATCTG 256370 28 96.4 32 ...........G................ TGTAGCGCGTCCAGCGCAAAGCCGGCGGCCGC 256430 28 89.3 32 ...........C....T.G......... GAGGCCGCCTTGCCGCCCTCCGTAAGAACTAG C [256455] 256491 28 92.9 32 ...G.............T.......... CACAAGACCGTGCACGCCAACCCAGGCGGCAG 256551 28 96.4 33 ........................A... CAGGTGAAGTGCTGCGACACTCCGGCGGGGGTT 256612 28 89.3 28 ....G..A..T................. GTCGAGCACTTGCAATGTTCTTTCGCAA 256668 27 67.9 0 .C.GG..-.AT..C..........A.G. | C [256681] ========== ====== ====== ====== ============================ ================================= ================== 52 28 97.1 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCGATTGCCGAGACGCCGCTGACCCTGGGCCAACGGAAGGAAGCCCTCGCCGCGCTTTCCTGCCTGGCTAACGCTTCTGGCCGAGACGCCTTGCGACGTTGCGAAGACGGCTGATGTAACGGCGAGTAAAGAAGGAGTCCGGACACGCGCCTTGCGTCGGCACGGCTTGAGCGCCGACGCGGCAGCCGAACGCATCCCGGACACCGCGGCCGAACGATTGCGGCTGCCGTTCGTGGTGCTGGGCAGCCGCAGCACCGGCCAGGCCGCGTTCCCCCTGTTCGTGCGGCATGGACCCCTGCTGCAGGAACCGGTGCCTGGCACGTTCAACAGCTACGGACTCAGCAGCGGGGCCACCATTCCCTGGTTTTGACCCTTTCTCCCAAGCACGTCGAGTGCCCTATTGAAATCAAGCACTTGGCAGCCGGCTCCAGCAAAGGGGGCGGCTGCTTTTCTTTGCAGGTTTCCTTTCTCCGTCAAAGACTTGGAGAATGGTGGGGCTA # Right flank : ACGATAGCAACCAACACACAGCGAAATGGCCAATGTCACTGGCGAAAATCTCTAACTTGCGCTATTGACACGCTCACCAGTCAGTCGCACTCTTGACTCAAGGAGCGTCGAAACTCCTCTAGTAGCGGTACCCACCTCCGACAAACCGGTGGGTTTTTTGTGCCTGCATGCTTTGCAAGCGCAAGCCGACGCGATGCCTGCGTCGGGAGGGCGGCTAATACAACACCCTTCGGGGAAATACGCCCGCCGGCTACTAGCGGTTTCGAACCTCCCGACTTCCCGTCCGCCGTTCTTGGCGGGCGCACCCCTTGATGGAACGAGGAGGCAACGATGTCGCACGACCGTTTGGACGACGAAGACATGCCCGGCTATTTCCTGCCGGAGGATAGCCAGTTCCGTCTGGTGAAGCTGCGCGATCACGTGCGGTTCCTGGCCCGGCTGGCGCAGCCGCGCACGCAGGCCGAGGAGCGGGCCGCAGAGCCGAAAGTGCGCATGGGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //