Array 1 432-1655 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZYM01000023.1 Neisseria meningitidis strain Neisseria meningitidis isolate R083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 432 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 498 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 564 36 100.0 30 .................................... TTTTCATCGTAACATAGTTGCTTGCGCCAA 630 36 100.0 30 .................................... ACAATGTTTCGGCGCAACACATCAGCAGGG 696 36 100.0 30 .................................... AAATTTAAAAACTTCAAAATTAAATACAAG 762 36 100.0 30 .................................... AAGGGGGGTCAGGGGGGTCGGAAAAAATAC 828 36 100.0 30 .................................... ATCAAAAACGCTCAATATAAAAAATCAAAA 894 36 100.0 30 .................................... AATTTACCAAAACAAACCAATACCATGCAC 960 36 100.0 30 .................................... AAAAATAACAGACTCATCAGAAAAATAAAT 1026 36 100.0 30 .................................... CCAGCCTACAAACCCTACAATCGCAATCAA 1092 36 100.0 30 .................................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 1158 36 100.0 30 .................................... ATGTTTTTGGCGAGATGGTCGTATGTATCG 1224 36 100.0 30 .................................... TCCCTTGGGATCTCATGCAATAATTTCCCC 1290 36 100.0 30 .................................... TCCCTTGGGATCTCATGCAATAATTTCCCC 1356 36 100.0 30 .................................... TCCCTTGGGATCTCATGCAATAATTTCCCG 1422 36 100.0 30 .................................... TCCCTTGGGATCTCATGCAATAATTTCCCC 1488 36 100.0 30 .................................... TCCCTTGGGATCTCATGCAATAATTTCCCC 1554 36 100.0 30 .................................... CCTGACAGGCTAGGATTTCCGGAAAATAAT 1620 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //