Array 1 3416-2347 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569928.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3415 30 93.3 31 ..............T..............A GCGATGCGAACACGGGAGGATCTCCTGGACG 3354 30 96.7 31 ..............T............... TCCTGACCGTCCTCGGCGACCGGGACACCAT 3293 30 96.7 31 ..............T............... CCCTCGCCCACCACATCCCCCACGTGCAGTC 3232 30 93.3 31 ..............T..............A GATCCGTCGCGCTGATGCTCACCGAACTCGC 3171 30 96.7 31 .............................A GGGCCTGCGCCGCGAGGACCATCTCGCGGGC 3110 30 100.0 32 .............................. GCGATGACACGGTCATCACGGCCCGGGGAATA 3048 30 100.0 32 .............................. CTCACGGTCTCAACGCCGCGGTGGCGGTGTAC 2986 30 93.3 31 ............................TC CGGGCGGGCCGTCCACGTTGACGGTGAACTT 2925 30 96.7 31 .............................T GCTGGCCCTTGTTGCCGGCCCAGGGGTAGTC 2864 30 100.0 31 .............................. GCTGGCACCCGCACATCCACGCCATCGTCCT 2803 30 96.7 31 .............................T CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 2742 30 96.7 31 .............................C GTGCCGAGGCCGGCGTGCGCTGTGATCTCGC 2681 30 90.0 31 .....................A......TC CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 2620 30 93.3 31 ...........A.................A ACGGCAACTGCGTCGAACTCGCCCAGCTCCC 2559 30 93.3 31 .CA........................... CGGTCGACATCTCGGGTTCTCCGGTCCAACC 2498 30 96.7 30 .............................C GGGCGAGGGCGGCACCATGACGCCCGGCCA 2438 30 96.7 31 ......................C....... CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 2377 30 83.3 0 ...T......T...............A.TT | C [2351] ========== ====== ====== ====== ============================== ================================ ================== 18 30 95.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGATATATGCCGGTTTCTCAACAAGTTAGTAAAAACCACCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GTCCCAAGTCGAGGAGTCTGCGGACCTACCAACGCAGTCGGGGCAGTAACTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCTCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCCACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCACTCGTAGGGTTACAGGGATCGAGCACGAAATACCAACCCGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATCCCGCCGAGCAGTTGGCATGGCGCCGGATCACCGCGCAGCACGGCGACCGGCTCGGTCAGATCA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8213-7574 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569928.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 8212 30 96.7 31 .............................C CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 8151 30 96.7 31 ...A.......................... GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 8090 30 96.7 31 ...A.......................... CCATCAGCGGCACCCACGCGGGGCGCTGAGT 8029 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 7968 30 96.7 31 .............................A GCGGCTTCGCGCTCGAATTGTGGGCGGAGGT 7907 30 100.0 31 .............................. GCACCACACCGCTGGCCGCTCTGGCCGCCGG 7846 30 100.0 31 .............................. CCCTTGGTCGGGTTGGCCGCGTGAAGGAGCT 7785 30 100.0 90 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 7665 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 7603 30 80.0 0 ......................CCAG.GT. | ========== ====== ====== ====== ============================== ========================================================================================== ================== 10 30 95.0 38 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : AATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCAGGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCCTGCGCGTAGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTAATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGCT # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 102536-102809 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569928.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 102536 30 96.7 31 .............................A TCGGGTTGCGCAGCATCCGGGTAATGACAGC 102597 30 100.0 31 .............................. TCACCCGGCCGCGCCGGGCCCACATCCGGTA 102658 30 96.7 31 ............C................. CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 102719 30 83.3 31 ...........TGG............T..A GCAGGGGCAGGAAGTCCAGGACTGCGGCGCC 102780 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 89.3 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Left flank : GACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCCCCGCAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACGGGCAGCGACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCTCGTCGGGCAGGTCGGGCATACCGCAGCCCCGGGGCCCACGCCTGCGAAAGTCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCACATCAGCCGAACCACACGTGACCACACTGCGGCAGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGCAAAACCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGTGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19051-19387 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569948.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19051 29 96.6 32 .........A................... GGCTACCAGGCCTGGCCGAAGTACACGAAGTA 19112 29 89.7 32 .C......................AC... CAGCCAGGGAACGCGTACCTCAGCGCGAGCGG 19173 29 96.6 32 ............................T CCTCGGCTGCCTCCTCCGCGCCGTGTTCCTCC 19234 29 100.0 32 ............................. CCGGCTGGGTCGACGTGAACGTTCCCGGGTGG GGG [19256] 19298 29 100.0 32 ............................. CCATCGGCGGCCGCCCTGCGGAATGGGTCAAG 19359 29 89.7 0 .............A..........CC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGAGGGGCTGCCGGCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAGACCCGCAGGCCACGAAGG # Right flank : CCGGGCCACCCTGGCCGGGCTACGCCGCCCAGTGCTCGCCGCGCGCGGGGACGGCCCCTTCTCCGGCGGGATGAGCCGGGGGCGCAGGGTGCGCCCTGCGGGCCGGAATCACCTGGGCCGTGGCACCCCCGCCTCAGCCCAACCGGAGTGTCGGGCTGAGGCGCGTGCTGCGGTCAGTGGCCGCATATGTTGCAGGGGTAGGCGGTCTGGCTGATGCAGTTGCCGTGATCGTCGTAGATGTAGATCACGGACCTCTGTCCAGGACAGCCGGGGGTGCTAGTGCACCCGATGGCCTGGTCTTCTTGGTGCCCCATGGTGATACCTCGCCTTCTGCTCGGAGGTGGGTTCCCACGTCCTCCGGCAACCAGCGCAGAACCAGAACCACCGAAGCGGGCGGCTCGGTGCAGTGCGGCTGGTGTCTCGCCAGAGCGCCCGGCCGTCCGGGCAGTGGGGGCAGAGCGGCGGCTGGTCCACGGCGTCCTCCTGGAGCAGTTTCGAGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22464-23040 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569948.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22464 29 96.6 32 .......G..................... GTGCCGATGGGGTCGAAGGGGCTGTGCATGAA 22525 29 100.0 32 ............................. GGAGTCCTCCGCCTCTACCGGCACATCACCAC 22586 29 100.0 32 ............................. CGTTCGACCGCCATCGGCCGCTCGATCTTCAC 22647 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 22708 29 100.0 32 ............................. CAGACGGCGTTGATGCGCCCGTCGAAGTAGTA 22769 29 96.6 32 ...........C................. TCCAGCCCGGAGAACGTCTCGGGCATCCCCTT 22830 29 100.0 32 ............................. GTGCGGGCCATGCTCATGGGGCGGATTCCGGT 22891 29 96.6 31 ....................A........ CAGCCAGCCCACGATGCCTATCTCCGGTGGG 22951 29 96.6 32 .......T..................... CCGTACAGGATCGTCTCGCGCCGACAGTGGTA 23012 29 82.8 0 ............T.A.......C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCATCACCCAGCCCAGCGAGATCGCCTTGTACACGAAAGCGTTCGAGGAACTGCGACAGGCTGCGGTGTACGGCGCAGAAGCACGCGCCCTGATCGTGAAAGCCATCGACGCCCTCGGCTGGCCCGAGCACCGTGCAGGGCGATGAAGTTACGAAGCTACGGTTACGTCCCCGAGGGAGTGGGGGTAGCCCCAACTCGGGCCGATTGATCTGGTCGTGGCGACGGCGCGTCATGCGCATACAGAGCTGTCGCGTCGATGCACTCCCCCTCAGCGCCAACGAGATCGTCACCGCCCCCGCAAGGCTCCGACCTACGATCCGGTCGCGGCTGCACCTCCTCGCAGAAACCGCGAGAAGCCCTCCCCTGCAATGAGGGACGTGCAGAATGACTTCTGTCGAGCATCAAACAGGTCGATTCACCCCGAAGGTCCTGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGAGCCTACCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : CTCCACACCCCCACCCGGCTCCACCCAGCCGGCCAGCCGGGCGCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGACAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCTCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 28766-28978 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569948.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 28766 30 93.3 31 ........................T....C CCGCCGCAGGAGCAGCCGCCGTGGGCGTGGC 28827 30 96.7 31 ............................T. CCCCGGTCGCCCACCGCCGGTGAGGCTTCTG 28888 30 100.0 31 .............................. GCCTCGCCGCCGTGATCGAGCAGGTGGTCGT 28949 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== =============================== ================== 4 30 94.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGACCCAGATAGGACCGGCAGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCATTCCCGCCACCTAAACCCCCAGGTCACGAAGGGTGGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGGTGGTCCTCGCGCACGCGGGGGTGTTCCCGGGTGCGGGGCGGTGCCCGGGTGGTCGACGTA # Right flank : TGCGCCCCGAGCAAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTCCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72241-71785 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569962.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 72240 30 100.0 31 .............................. CGACGGCATGCGCCCGGCAGAACCCGTACGC 72179 30 90.0 31 ..A...............A..........C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 72118 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 72057 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 71996 30 90.0 31 ............AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 71935 30 93.3 31 C............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 71874 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 71814 29 80.0 0 ........-..C.GG......C.....T.. | T [71800] ========== ====== ====== ====== ============================== =============================== ================== 8 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACAACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGACTCAAGGCACCGGTAGTGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGGGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCCACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTTTTTGCGACAGAAGGTCGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCAGCTACCTAAAACCCCAGGTCACGAAGGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCGCCCCGGTCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75861-75527 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL569962.1 Streptomyces californicus strain NRRL B-3320 P050_Doro1_scaffold56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 75860 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 75799 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 75738 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 75677 30 100.0 31 .............................. CAGCCGCGCTCGTGAACTGGCGGATCACCAC 75616 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 75555 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAAC # Right flank : CGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //