Array 1 27602-26988 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZUN01000001.1 Methylomicrobium lacus LW14 MetlaDRAFT_chromosome1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 27601 36 100.0 36 .................................... ATGTGCTCAGCGATTTCCTGCGCGGCCAGTACGGCA 27529 36 100.0 35 .................................... AATTTTTGTTACTACTCTTGAGCCGTACACTACAT 27458 36 100.0 37 .................................... AGGCACAGTAAAAGGAATGCCATCATCAGAAATCGAT 27385 36 100.0 36 .................................... GTAGAGTGCGGTTATATTTGCAGCCTTAGTATTAGC 27313 36 100.0 37 .................................... CTGAAACAACGCGGTAATTTGAGCTTTAATAGAATCA 27240 36 100.0 35 .................................... GATACGGTTTTAAGGCCGTCTTCGGAATCGGCTAT 27169 36 100.0 37 .................................... GAATCGGAACGCACAGACTCCCAGGCGGCGGTTTCAT 27096 36 100.0 37 .................................... AAAAAATCGGTCATGTGCTGCGATCATCTTCAATCAA 27023 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 100.0 36 GCTTCAATGAGGCCCCGGCTCTATGCCGGGGAAAAC # Left flank : AATAGCACGCCGGCCGCGATCAGAGCCAGCGCGATGACTTCTTCCGCAGGAGGTCGGGAGATACGACGCCAGAAGTTGGCTTTGCATCGATCCATCCATGTTTCAATCCGCTCCCGGCGGCTAGGCCGGGATATGCTCTGGACTGGTCTATAGGGAAGCAGAAGAAGGTGCTAAACCTGGTTAGATCGGCTTTGAAGATCGATGCAAATGCGCTGCTTGATCGGAGTCGCTATAAAGTTTTGAATTGATACCGAAGGTAGGAGGTCGGCAGTTCCTCCATCCCTGGTTGGCATATGCCCGCCAGTTGACCGGACGCCGATTTTCCGGTCGTCACCCTCGACAGCTATATGATACCAGCCTATAAAAATTGTTCATTTCTTTGTTTTTCACATCCTGAAAACTCTTTTTATTTTTGTTCCGTTTCATCTCTCTTCATTTTGTTTTATTTCCATTTATCTAATCTCTGTTCAGCAAGCGCCACGCGGCGACCGGCGGACATC # Right flank : AGCCTGCTCTGAAAGGCTTGGTTTACGAGTCTTCCAGCGGCCAATTGCGAGCACTGCCAAAACAGCACGCCTGCCATTATACAAAACCCTCATCCAAAGCCAATCTTCATGTATAAAAACCTGATTTTTAAAGAACAATCGTTCGCGAGCGCTGACCGTGATTTTGACACCACAACAGCGCTCGCCGTGCTCGGCAAGAATAGCATCAAACGATCACCGGCTGCCGCTGCAAAACTTCAAAATCCTTGCCCAGGCTGACCACCTGCGGCTTGACCGATTCGGCGGGACCGATGTTGATGATCAGCACATGATCCTCGCTATGATGAATGATGCCATCCAACAACGCAATCAGCTCGGCATGGCGCTTGCGGCTCAAGCGGCATTGAAACACCGACAACTGTAACCAATCACCATAGCCCTTCATCAATCGGAACACGCGCCTCCAGCGTTTTGGGTCGCTGATATCGTAAGTGACCAGATACAAATATTCGTAAGTCGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCTCTATGCCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.30,-16.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 641228-644918 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZUN01000001.1 Methylomicrobium lacus LW14 MetlaDRAFT_chromosome1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 641228 28 100.0 32 ............................ CCATCACACCAAAGAGCAAAAAACCGCTGGTT 641288 28 100.0 33 ............................ TCCAGAATGTTGCGTCTGAAACGCCCATTGTTT 641349 28 100.0 32 ............................ ACTATCGTAGAGAGTTAATGTCGCGTCACGGA 641409 28 100.0 32 ............................ CCTTGGTTCTTCACGATTTCGACGGTATAGCC 641469 28 100.0 32 ............................ TTACACGGTTTCAGTTCTTCATTCGGAATTTA 641529 28 100.0 32 ............................ AACCGGGCGTTGAATATGCCAATTTACCATTT 641589 28 100.0 32 ............................ ATACTAAAGTGTGAGTGTTACTTGCACTTCTC 641649 28 100.0 32 ............................ ATTGCCGCCGCTATCAGTACCTCAGCCGGATC 641709 28 100.0 32 ............................ TTCTAGCTGTTTTCATCACAACCTTATCCACA 641769 28 100.0 32 ............................ GCCAACAGATGTATTTTTATTGCAGTCAGGAA 641829 28 100.0 32 ............................ ATCAGCATGAAGGGTTCGGCGTCGGGTTTCGC 641889 28 100.0 32 ............................ ATCAGCGGCGAACCGAGGCGGGCCGGGTGGTT 641949 28 100.0 32 ............................ ACAAGCTAAAAATAGATTGGAATAGCGAATCG 642009 28 100.0 32 ............................ ATTGGGGCCAATTGTTTGGTGTAAAACGTTGA 642069 28 100.0 32 ............................ GACTATCTGTTTAATGGTTGCCATCGAAAATT 642129 28 100.0 32 ............................ TTTCCGAGCTGCTGCGCAATCTGCCGGTCGAG 642189 28 100.0 32 ............................ TGTTTGTTGCCAGACGGCGTATTTGTCGTTGC 642249 28 100.0 32 ............................ TACCAAAGCAGCGCGCATTACCAGCTCTATCG 642309 28 100.0 32 ............................ AATCCACTGCCACCGGCAAGCACACGGCCAGC 642369 28 100.0 32 ............................ GGATCGAGGCGATGCCTGCCGCCGGCGACATC 642429 28 100.0 32 ............................ ACATAAAATAGAAGCGAGACTCGCCCATATTA 642489 28 100.0 32 ............................ ATTATGACAGATAAAGCCGAATCCGTTGCTTT 642549 28 100.0 32 ............................ ATGTAGTCGGCCAGGCTAAACGGTTTGTCGAT 642609 28 100.0 32 ............................ TGGATCAATTCGTGCGGCTCGCGGTTGAATTC 642669 28 100.0 32 ............................ TGGAAGCCGCCGCGTACCGCATTACGGACAAC 642729 28 100.0 32 ............................ ACAGTCTGAGCGTTAACCTCGACAATCTCTGG 642789 28 100.0 32 ............................ ACATCACGGATAAACGGCACCGTTTTGCCGAC 642849 28 100.0 32 ............................ ATCCTTCAGCGTCGGGTGACGCAAATTCATCG 642909 28 100.0 32 ............................ ATTATAAAATGTGGTGCCAGCAGGACACGCAC 642969 28 100.0 32 ............................ GCCACGAGCATCTTTGCAGGCAGAATGAGCTA 643029 28 100.0 33 ............................ TAAGCGCGTTTCTCAATCAGGCTTGGTCTTCTC 643090 28 100.0 32 ............................ GCAACAGAATCGAGATACGACTGATTATTTGA 643150 28 100.0 32 ............................ TGATGGTGGTTTATTAAATCTTGGTTGTTCCT 643210 28 100.0 32 ............................ ATTATAAAATGTGGTGCCAGCAGGACACGCAC 643270 28 100.0 32 ............................ GCCACGAGCATCTTTGCAGGCAGAATGAGCTA 643330 28 100.0 33 ............................ TAAGCGCGTTTCTCAATCAGGCTTGGTCTTCTC 643391 28 100.0 32 ............................ TGATGGTGGTTTATTAAATCTTGGTTGTTCCT 643451 28 100.0 32 ............................ ATCGCGTAAATTTCCGAGGTCGGGAAGTGGAA 643511 28 100.0 32 ............................ AGCAGATCATAAATATTGACGCCATCGCTCCA 643571 28 100.0 32 ............................ TTGATGAAATCCACTTCGGCCAGCGGATTTTC 643631 28 100.0 32 ............................ AAAGAAAAACAAAATACCCCGCATACGACCAA 643691 28 100.0 32 ............................ TTTCCGAGCGTATTGCTAGCGTATCCGAAGGA 643751 28 100.0 32 ............................ ACCAGCTCACCACGGTAAGGATTGAAGCGCCC 643811 28 100.0 32 ............................ TATGCCTAGCGCCGTTAATACTCTGGCAGCAA 643871 28 100.0 32 ............................ ACAGTAGAGAAGACCATGCTTAACAGAATGAT 643931 28 100.0 32 ............................ ATTCCCGGCAGAGTCGGTCAGCGACATTGTAT 643991 28 100.0 32 ............................ TGGATCGGATCATCCAGCGAAAACGTGCTCGG 644051 28 100.0 32 ............................ CTGTTTACAATGTGCGGGCCGTGCCGCTGGAA 644111 28 100.0 32 ............................ TACATCATGCTCAGGAATGCCGGCATCGGGCC 644171 28 100.0 32 ............................ AATCTTTGCCGAGGTGATCGAGTCTGCCGGTG 644231 28 100.0 32 ............................ AATCTGCGCATGCAGCAAATGCTAGATGAGTC 644291 28 100.0 32 ............................ TTACCCATAGGCAAAGTCCATGCGTTAACCTT 644351 28 100.0 32 ............................ GCCTACCTGACCGTTCCAAATCGTTCGGCGAA 644411 28 100.0 32 ............................ AGTCTCGATATTCGGAAAGGCGCTCACGCTGC 644471 28 96.4 32 ...........T................ TCTGATGCGGGCAATGTTACATCAGGAGAACC 644531 28 96.4 32 ...........T................ AATGATCCGATGGAACGACACCGCATCCGAGC 644591 28 96.4 32 ...........T................ GATCGCGTGTTGTACAGATCCCAGTTCAGCCC 644651 28 96.4 32 ...........T................ ACCGGATCGGCCAGGCGCATAAGGTGGTCTAT 644711 28 96.4 32 ...........T................ CATCTGGTCGATCCCCATGAACGTGCCGCGCC 644771 28 96.4 32 ...........T................ AACGCGCTGGAGGCAGTCACCGCGCCGTCCGG 644831 28 96.4 32 ...........T................ AGCGACGTCAACCGCGTCAACGCGATCATACC 644891 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.6 32 GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Left flank : ACGCTGGATCGGTTTGACGCCGCAAAGTGGCTGGATCGGCTGAGCGATTACGTGCATTGCACGCGCATTCGCCCGGTGCCGGAGAAGCTTGCGGGTTACGCGATTTACCAACGCCAGCAACCCAAAACCAACAAAGAGCGTTTGGCTCGACGTTATGCGGTTCGGCATAAGGTCAGCTACGACGAGGCTTTGCGGCACTATGGCGACATGGCTCCGATTCGCATTCCCACGCCATTTATTCGTCTGAAAAGCTTGAGCAGCGAGCAAACCTTTTGTTTGTGGATTAAAAAAACCTTGGTCTCGGAATCCTCGGGAACCTGTTTCAGCAGTTACGGCCTAAGCGCCACGACTGCTGTCCCGGAATTTTGACCCAATTTTTTGCGTTCTTTAAAAATGTGATAAAAGTCAGTCAGTTGCGTGATGCAGTTTTCGGGATGGGTAAATCGGGTTAAATCTTCTTAAAACCGCTACGCAACTGGCTTCGAAGTTTTTTATAATCA # Right flank : ATATGACGATGTATGAATAGTTGACCTATGTTAGCCTCCGTTCCCCACGCCCGAGGGGATGAACGGACGTTAAAAATTTTCCAATACTTGGCGTGATGGTAATTTTACAAATCCATTTTATAACAAATACTTAAGTAGTATCATAGAAAAAATTGCATGCCATTTTTGTTCAAAAACTGGCAAAACTTCAACGCCATTTTCAGCCACACCTTACTTATAGGCTATTGCTTTATGTAGTACTAAGTACCATAATAAATTAAAATGGATCTTTATGTAGCCATCTTAAAACGGAGTTTTAGGCATGAGGGTTTACAAAACTAAATTTTTCGATAAATGGGCAAACAAAGAAGGCTTGAGCGATCAAGCACTTTGCAGCGCTGTTAATGAAATGTCCAGCGGCCTGTTTGATGCTGATCTTGGTAGCGGACTTTTTAAAAAGCGTGTCGCCGGGAAGGGAAAAGGCAAAAGCGGCGGGTTTAGAACCCTGGTGGCCACAAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 691685-689032 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZUN01000001.1 Methylomicrobium lacus LW14 MetlaDRAFT_chromosome1.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 691684 29 100.0 32 ............................. CTCGAAGCCGGCAGCCAAGACGCTAAGGAACT 691623 29 100.0 32 ............................. CTGTCAGGCGGGTTAAGAAAGGCGGCGCGAAA 691562 29 100.0 32 ............................. TCTGAGATTGATATTGGTGCAATGGGAGGGTT 691501 29 100.0 32 ............................. AAAATGAATAAAAAATTCACCATGATTGAGAG 691440 29 100.0 32 ............................. TCCAGGCCAATCAGTACGGTTTCCCAGTTCTT 691379 29 100.0 32 ............................. ACTGCGGATTTCTTATCCGTCAGCTTGTAAGT 691318 29 100.0 32 ............................. GATTCACCATGGAATTTCCAGTCGATTTGAAA 691257 29 100.0 32 ............................. TACCAGGATGGGTTTATCGACCAGACTTATGG 691196 29 100.0 32 ............................. GCCACTAGCGGCAGTTTGCATCAAAATCCCCC 691135 29 100.0 32 ............................. TGTATGTAGATGGGCAGCCGGAAAACGCGCAT 691074 29 100.0 32 ............................. GGATGGCATAAAATGCGTCAATGTCCTGGTAC 691013 29 100.0 32 ............................. AAGACGGGCTCACCCACGATGGTGTCTGTCGG 690952 29 100.0 32 ............................. CGCAGGCAGTCATGAATAATTACCTGGCGATT 690891 29 100.0 32 ............................. TCAGCGCGGAAATTGCGCAGGCCAATATCGCA 690830 29 100.0 32 ............................. GCGGCGATAGAAAATTGAACAAAGCGACCCGC 690769 29 100.0 32 ............................. TCCGATTTTGAATCTCAATTTGCTTTGGTATC 690708 29 100.0 32 ............................. GCGAGTGCTAACAACGGGAAAAGCAGACCGGC 690647 29 100.0 32 ............................. TTTGTGTTTCGCTTCCTCTTTTAATTATGGCC 690586 29 100.0 32 ............................. AATTTTCCGATGCTATCAATCCACCGCTACCG 690525 29 100.0 32 ............................. TTCGAGGTTAACCGTGATCCTAACGGCAAAAT 690464 29 100.0 32 ............................. AATGGGAGTCGATACAATGCGCGCGATTCGGT 690403 29 100.0 32 ............................. TCGATCAAGCTGGAAGAGGCTGCCGCGCGCAT 690342 29 100.0 32 ............................. CAGAAACAAAAACAACAAACAGAACGTATAGC 690281 29 100.0 32 ............................. GCCGGGACTAAATAGCTCGTCGTAAATCTGAT 690220 29 96.6 32 ............................C TGATCGGCGTGAACGAGCGGCATTTTCGCGCC 690159 29 100.0 32 ............................. AAACCGGACGACAAGAAGCCGGAAGCCACCGA 690098 29 100.0 32 ............................. ATCAGGCTGGAATTTACGATGTTATGGACGCA 690037 29 100.0 32 ............................. ATACACAGCGGACGGCGGATTCTTTTGGAGCG 689976 29 100.0 32 ............................. CGGCGGCCTGCAATTCGTGGCCGAGATAATCG 689915 29 100.0 32 ............................. GACGCCTACGACCAGCACCTGCGCGAGCAATA 689854 29 100.0 32 ............................. CTGATCGCCAAATCGGTAGAGCGCACGCGGCG 689793 29 100.0 32 ............................. CAAAAAAATGTATCGCATTCAATCAGAGGAAA 689732 29 100.0 32 ............................. TTCACAACGTCAGTTTTTGACGATTTTGTCAC 689671 29 96.6 32 ............................A GTTGCGATCAGGCGCGGGGTGCATACGCTATC 689610 29 100.0 32 ............................. GTAGTGTACCGACAGAGTAGCGAGATTTGAGA 689549 29 100.0 32 ............................. AAGTTTCTTGTCCCCACGGAAACTGGCGAATT 689488 29 100.0 32 ............................. CGATATTCGCATACTCGAACGCAACTCGTGAG 689427 29 96.6 32 ............................C GGAAGACAGCCGTTACGCAAACGACCTGGCCC 689366 29 100.0 32 ............................. CCCTGGTCGAACGCGGTCGGCGCGCCGGTGCG 689305 29 100.0 32 ............................. TCGCATCTAATCAGGTTTCAGTCCGTAGCGGC 689244 29 100.0 33 ............................. ATATTTTCGTCGAACATGGCGGTGAAATCCGCC 689182 29 100.0 32 ............................. AATGACTTCCTTGTCAATGTTCGACCTGTAAA 689121 29 96.6 32 ............................A GCCGCTGAGTCATTTGTTAGATGTTGCAATTT 689060 29 96.6 0 ....C........................ | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.6 32 CCGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : AAAATCATCCCCACCATAGAAGACGTCTTGGCCGCCGGCGAGTTGGAAATACCCCAGCCCACCGAGGAATCCATCGGCCCTGCAATTCCCAATTCAGAGAGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCCTCGATTACGCGGACGCCTGGCCGTCTGGCTGATCGAGATTCGCGCGGGCGTTTATGTCGGCGACTTATCGGTGAAAGTTAGAGAGATGATCTGGTCGCATATCGAAAACGGCATAGAAGAAGGCAATGCGGTGATGGTCTGGACCACCAACACCGAATCCGGCTTTGACTTCATGACATTAGGCAAAAACCGCCGCCTGCCGGTTGAACTGGACGGACTGAAACTGGTTTCTTTTTATCCCGCGGAAGACCCAAAAGATGAAAATGCTCTTTAACAATTTAACCTTTAAAAACCCGGAAAAATTCGGTAGAAAATTCGAGGCGATTATTTCTTTTGACTAACAATATGTTAGGATAAGT # Right flank : GCACAAGGCCCGAGCAAAAATCCCAGTAGATACCGTCTTGTCATCCATTATGCAAGCGCATAATGGATGACAAGACGGTATCTACACTTGCGATTTCGCGTTAAACGGGATGCCGGTTTTTCTTGAAATATTCAGAAGATCGTCCACCACAGGCTTAATCAACGGAATCCCTTCTTGGCTTCGAATCGCTTCCGCTTCTCGCTCAGGATCGCCGGGGATCAGCGGCCCGCTCGTCCCGGGAGCCGGTTTAGTATTGCGGAAGACGTGAATCCAGTCATCGATTTGTTTCTTGAATTCATCCTTGTCGATGAAGCCGTCGATCTGCATGGCGCCGAAAAAATGGCCGATGCCTTTGCCGACGCTGCGCGCGGGAATTTCTTGCCTAATGGTGAAAGGGGGGGCAAAGGGACCCCAGTTGGCGCCGCTCAGGACGCCGCATAAGATATCGACCATCGAGGCGAGACAATAACCTTTGTGCCCGCCTATTTCTCTATCGAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1837267-1838642 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZUN01000001.1 Methylomicrobium lacus LW14 MetlaDRAFT_chromosome1.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1837267 37 100.0 34 ..................................... TCGTCTGGCGTTTCGGTTTTCTTTTCGTTCGCCT 1837338 37 100.0 34 ..................................... GTTCAGCAAAAGGTCCGCTTGCTTTGCTTGCTCA 1837409 37 100.0 33 ..................................... GGTACGACCCTCGGTTGACTCTCTTGTGCATGT 1837479 37 100.0 33 ..................................... GATTGCATGGCAGCAGACATTGCACTGACTTCA 1837549 37 100.0 32 ..................................... GGGTTTCTTTTTTAGTTGCCATGTTTTTCACC 1837618 37 100.0 34 ..................................... GAAGCCGAACGACTTCATGACGACTGGCAGTTCT 1837689 37 100.0 33 ..................................... TTGCCGTCAAGATTGGCTTCAGCCACAAGGCCG 1837759 37 100.0 34 ..................................... GCTGCTACATCGCCAGAACCCTGCACCTTGAATG 1837830 37 100.0 33 ..................................... ACTCCTGGAAAGCCAATGCCAGCAGGGACACCA 1837900 37 100.0 34 ..................................... TCACCTACTTTGATCAGGTCTTCTTTGCTGGCGT 1837971 37 100.0 33 ..................................... CTTGCCAGTCATGGCAAGCACCTTGCCATCAAG 1838041 37 100.0 35 ..................................... GTCCTGTTCAGCGTCGAGGACCAACACCCCGACTT 1838113 37 100.0 34 ..................................... CAAGTCTGACATGTCAGACTTGTGATCAGTCGGT 1838184 37 100.0 34 ..................................... CTTATATAAGGTTAATGAATTATTGGCTATCTTT 1838255 37 100.0 34 ..................................... CGCACGGGCGTTGTTTGGGGTATGAGACATATCA 1838326 37 100.0 34 ..................................... CAAGCGGGTCTGGCGTACCGACAATGGTAGTGCC 1838397 37 100.0 31 ..................................... CGACGGCGGTGATAACTCCGAATGATGTAAA 1838465 37 100.0 32 ..................................... ACTGCAAACTCGACAGATTCGCCAGGGTTCAG 1838534 37 100.0 35 ..................................... AGGGATTTACAACGGCGGCGCGTGACGCGCCTTGT 1838606 37 73.0 0 ..........................CCACCCT.ACG | ========== ====== ====== ====== ===================================== =================================== ================== 20 37 98.7 34 ATTTAAAACACTGACCTTATAAAGAAGGGATTAAGAC # Left flank : TTCGTCAACGGCGGCTGGCTGGAGCAGCATGTTTACGGCCAGTGTCTGAACTTGAAAAAATCGGCCGGCATCCAGGACATCGGCCGCAGTATAGAGGTGGAACGGCTGCATAAAAACCAGCCGGTCAGGAATGAAATCGACGTCGCCTTGCTGAAAGACAACCGGCTCTACCTGATCGAGTGCAAGACCAAGGTCTTCAACGGCAATCATGCCGTGCACAGCGAAGGCGCGCAGACGCTCTACAAACTGGATACCTTGAAAGACCTGCTGGGCGGTTTGCAAGCCCGCGCGATGCTGATAAGCTTTACCCAACCCAAGAAACACGACTTGCAACGCGCCGGCGATCTCGGCATCGCGGTTTGCAGCCATCGCGACCTGCTAAACCTGAAAGAAAAACTGAGGGCCTGGATAAGATGACACCAATTAACTTTTCGAACGTGCAAAATTGCCCCAACCCCACTGCCAACCCATTGATTATAAAAGGAGGAAAACACCGAGCT # Right flank : GGGTTGACAAGCTTGTCAACCCTGCAATTCGGCGGCTCCATGCGTATGCTGTACGCATGAGCAAACGCCAACTTTACATCGCCGCTTACGACATCCGGGACCCCAAGCGTCTACGCAAAACGCTGCGGGTGATTCGCGCCTATGCGTCCGGCGGCCAGAAATCGGTCTATGAATGTTTTTTGAGCAAAAGCGAAAAGGCCGCCTTGCTATCCGAAGTCAGCGATGTGATCGACACCGACGAAGACCGTTTTTTTCTGCTCAGGCTCGATCCGCGCAGCAAAGTTTATACGCTGGGCAAGGCATTGCCGCCGCAGGACGGCGCTTTTTATTACGTTGGCTAAGACATCGATGTCGTGTCCATCGCCACGGTAAACGAAAGCACCGGTGGGAGCGACGCCTACGTCGCGACTCGAGGCTTTAATCGCGACGTGGGCGTCGCTCCCACCACCATAGGTTTTGAACGAGGAGACACTATGTACACATTGTATTTGGATAGGAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAAACACTGACCTTATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //