Array 1 185597-185329 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXZ01000005.1 Vibrio aerogenes CECT 7868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185596 28 100.0 32 ............................ TTGTTCTATTGCCGATTTTCGGCAACGTCACA 185536 28 100.0 32 ............................ TCGCGGGCCGTTGTTCAAGAGTGGATCAACTA 185476 28 100.0 32 ............................ GTTCTGGACAGGTGAAACATGGAGAAAAGGAA 185416 28 100.0 32 ............................ AAAGAATCGATCAGGCGGTTAGGCCGGGAGCT 185356 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGATTTAACAGCGGATTTAACAGGGACAGACGTACTTTGAACTGTCTTTTATTTGAGATGGTTTGTCTGACGATTCAGTTCGCTCCCCTTATTGCCGCCTGATGCAAATCCACGACACTGAGGGCGTTGAAATTCAGGGACGAATTTCAAGGTTCGCTGAACAGGATGCGAATCGAACCGTACCCCGGCTCACATGTGATGAACTAAAAATGCATCAGGAAAACGGCAATTCGGGGCGATTTTTTCTGCTTCGTCTTTTTCATCGGGGAAAAAGATGAAGTGGTGCGCGTTCACCAGTGCCACTTGGATCAGCGCAACAAATAAGCGTACCAAACCAGTCACCACGGCTAAAAGCCGCCACTACACCGCAGACCCTTTTTTCAGCGCCTTTGTAACTCATTGATTTTAAATCCCCAAATCGGGCGCTCAAAAAAAGGGGTTTTGCGAAGTTTTCAGCCGCATCCCTGTTGCTTGCTGGCCTGAGCGGCTATACTGCAACG # Right flank : ATTCTGAAAGACATCATGAAAGCCACAGATGGGTTCACTGCCGCACAGGCAGCAAAATTTAACCACCACAAATACGTTCAAATCCCATGTTGAAGCTTCCAGCTTCGGTGTCATCGATGGTGCGCCAATTCGTTTCGCTGACCCAAGCAGCCCCAAAATTGCATATTCTTGCGGTTTTTATTGAGCGCTTCATCAATCCGGCTGGTCTCATCTCAGGATTTTGCGTAAACTGAAGCACGTAAAGTCAGGGAGTGAGATCACCACGGAATGTCTGAATCTGTTTACCAAATGCACCAGAATCTGATTGATACCAACGCACACTTGCGTGATTCTGTACGTCTGGATAACGGTACTGAGCTGGCCTCATGGTTTAATCAGCAAGACCGGATTCAGGTACAAAATCCGGACCATCATACGCTGAGTTTGTATGTCGATGGTGGTTATGAGTCTTTTCTGAAAACACCTGAAGGCTGGAAGAACGGTGGTGGGCCGGACCGCAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 187224-186776 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXZ01000005.1 Vibrio aerogenes CECT 7868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 187223 28 100.0 32 ............................ ACATTGCCGGAAAGCAGATGGCTGGCCATGTC 187163 28 100.0 32 ............................ TGCATGAAAATATTGGTGGTACCGCTCAACCC 187103 28 100.0 32 ............................ CATTTGATTTCAATATCGTCATCATCGGGCGG 187043 28 96.4 32 ..........A................. ATTGCACAACGGGCCAGAGACGGGGATGAAAA 186983 28 96.4 32 ............G............... AGGAAGAGTTGAAATAAACTCCGGAGTAAATC 186923 28 96.4 32 .............C.............. ATGTCGAAGAGTGAAATCCGTCATGCCGTGGC 186863 28 92.9 32 ...........C.C.............. TGGGACAATTACAGTTATCGGAAGAAGCAAAA 186803 28 92.9 0 ..........................TC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAAAAATTTTGAACAGACGTCGTGTCTGTTCATCCTTTGGACTTCTTTTATTTGAGATGGTTTGTCTGGCGATTCAATTCGCTCCCCTTATTGCCGCCTGATGCAAATCCACGACACTGAGGGTGTTGAAATTCAGGGATGAATTTCAAGGTTCGCTGAGCAGGATGCGAATCGAACCGTACCCCGGCTCACATGTGATGAACTGAAAATGCATCAGGAAAACGGCAATTCGGGGCGATTTTTTCTGCTTCGTCTTTTTCATCGGGGAAAAAGATGAAGTGGTGCGCGTTCACCAGTGCCACTTGGATCAGCGCAACAAATGAGCGTACCAAACCAGCCACCACGGCCAAAAGCTTCCACCATCCCACAGACCCTTTTTTTCAACCCCTCTGTAACTCATTGATTTTAAACCCCCAAATCAGGCGCTCAAAAAAAGGGGTTTTACGAAGTTTTCAGCCATAGCCCTGTTGCTTTCTGGCCTGAGCCGCTATACTGCAACG # Right flank : CCTCTGCCGATATCACTGCAACCTCATCCGCATGCGCTAAATGGCTAAGTTGTACTCTGCCGTGTCTCCAGCACCAGAATCCATCGGTGTAAAACCAAGCTTTTTCAGCACAGAAGCACTTCGGGTATTCCAGGTATGAACCCCAGCCCACACATTTCCCCGATAACCTTCACGTTGAATGTGAGAGAGCAAAGATTCACACATTTGGGTGGCTAACCCTTGCCCCCAGAGTTCAGGGTTAACCCAATACGCCAGGGCCAGACGATTTTCCTGTGGAAACAGAGTCACCTGCCCAATAATGACCGAATCAGATGAACGATGGCATGTCCAAACAAAGCACTTGCCTGCATCCCAATCTAAAGCCCGTTCTGAGCACCAGCTTTCGGCTTGCTTCAGCGTTTCAATTTTTGCTAATGGCAGAGACGAAGGAAATTTTTCAGAACGAACCGCATCAAACAAAACCATCGCATCATCGATACAGACCGGGCTGAAGACAAGCT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 199695-199487 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXZ01000005.1 Vibrio aerogenes CECT 7868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 199694 28 100.0 32 ............................ ATATTGTGCAGCGAGACGGGTTAACAGGTTCA 199634 28 100.0 32 ............................ AGCTAATGCAGCACAGCGAAGGTAAGCGATGT 199574 28 100.0 32 ............................ ACTGGGTCGACGGTTTACAATGCATCTGACGA 199514 28 75.0 0 ...T.......C.C........C.ACC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAAAAATTTTGAACAGACGTCGTGTCTGTTCATCCTTTGAACTTTCTTTTATTTGAGATGGTTTGTCTGACGATTCAGTTCGCTCCCCTTATTGCCGCCTGATGCAAATCCACGACACTGAGGGCGTTGAAATTCAGGGATGAATTTCAAGGTTCGCTGAGCAGGATGCGAATCGAACCGTACCCCGGCTCACATGTGATGAACTAAAAATGCATCAGGAAAACGGCAATTCGGGGCGATTTTTTCTGCTTCGTCTTTTTCATCGGGGAAAAAGATGAAGTGGTGCGCGTTCACCAGTGCCACTTGGATCAACGCGACAAATAAGCGTACCAAACCAGTCACCACAGCCAAAAGCTTCCGCCATCCCGCAGACCCTTTTTTCAGCGCCTTTGTAACTTATTGATTTTAAATCCCCAAATCAGACGCTCAAAAAAAGGGTTTTTGCGAAGTTTTCAGCCGTAGCCCTGTTGCTTTCTGGCCTGAGCGGCTATACTGCAACG # Right flank : CGCCAACTTAACAAAACATAATAATTATTCTTGATTGAATAACACCGGGTTGCTTAACATAAGTGCCCGGTTTTACAACAAGGACAGCACCGTGGTACAGGAATTCTCCCCCAGCGAACTCAAAACCATTCTCCATTCCAAACGTGCAAATCTGTACTACCTGCAACACTGCCGGGTTTTATTCAACGCCGGGCGGGTGGAATATCTCACCGATCAGGGAAAAGAAAGCCTGTACTGGAATATTCCGATTGCCAATACCACCGTGATTATGCTTGGCACCGGCACATCTATCACACAACCAGCCATGCGGGAACTGGCTAAAGCCGGCGTCTTGGTCGGGTTTTGTGGCGGTGGCGGAGCGCCTTTATATGCTGCCAATGAAGTTCAGGTCGATGTTTCGTGGCTGACGCCACAGTCCGAGTATCGCCCGACAGAATACCTGCAACAGTGGTGCAGCTTCTGGTTTGATGATAAAAAACGCCTTGAAGCAGCAAAAATGC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 201325-201177 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXZ01000005.1 Vibrio aerogenes CECT 7868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 201324 28 100.0 32 ............................ AACTGTTTTAACCATTCATGATATTCCATAGC 201264 28 100.0 32 ............................ TGTAGTTTGGATTCATCCCCGAACATTTGAGA 201204 28 96.4 0 ...T........................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTGAACTTCTTTTATTTGAGCTCCACTAGTTCCCATGCTGCGCGTGGGAATGCATACCGGGACTTGAAGAAAGCAGCCCATTTCCCTTATTGCCGCCTGATGCCAATCCACGACACTGAGGGCGTTGAAATTCAGGGACGAATTTCAAGGTTCGCTGAGCAGGATGCGAATCGAACCGTACCCCGGCTCACATGTGATGAACTAAAAATGCATCAGGAAGACGGCAATTCGGGGCGATTTTTTCTGCTTCGTCTTTTTCATCGGGGAAAAAGATGAAGTGGTGCGCGTTCACCAATGCCACTTGGATCAGCGTAACAAATGAGCGTACCAAACCAGCCACAACAGTCAAAAACTTCCACCAATCCGCAGACCCTTTTTTTCAACCCCTCTGTAAGTTATTGATTTTAAATCCTCAAATCTGGTGTTTAAAAAAAGGGGTTTTGCGAAATTTTCAGCCGCATCCCTGTTGCTTTCTGGCCTGAACGGCTATACTGCAACG # Right flank : ATGACGGACTCATCGACGGCGTAATCAAACACGTTCACTGCCGTATAAACGTCCGACGCTCAACTCAGCGGATGCTGAGTGACATCCATCCGCTCATGCAAGACCCGGATAATATCAATATGGGTTGCTGTGATCTGGTAAAGCACAATGTGATGCCTGAAATGATAGACCCGCAGGCCGGAAAAAATATAATCGGCTGCCCGGCCAAGTTCGGGCATACCCGCCAACACAGACAATTTTTCAGCCAGCTCTCTCAGGTAACGATCTGCCTGACGACGCCCCCACTTATCACAAGTATATTGCCAGATGTCGAGCATATCCTGACGGGCCAATGGCCTGATAAAAGGAGTGACACTCATACGCCGGCGCGTTTTCTGGCTTCACAAAGCAGATCTTCTACGTCAAACGGCGCTGGTTCACCGCTTTCAAGTCCGGCATTGGCTGCGCTGCGAAGCGCAATTAATTTCGCCTGATAGACTTCGTCCTGCTGCATTTTTAAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 204146-203937 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXZ01000005.1 Vibrio aerogenes CECT 7868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 204145 28 100.0 32 ............................ GGGCATAGGAATCAACCAGTTCCTGACGTTGA 204085 28 100.0 32 ............................ ATATAGACAAATAAATTTAAGCACTTGATAAA 204025 28 100.0 32 ............................ TCCAAACCTCTGTATATGCATGCCCCTTGTAT 203965 28 85.7 0 ...C.......C.C.............T | C [203941] ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTTACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAATCATCAACCCGATTGGTTTATAACCTGAAAACAACCCGATACGAGGCAGTGGATTCGGTCACATGGGAAAAGTTACAGGATTTTGATGCCTTCAGTCAGTTACTGGATTATGTGATTGAGGAAAGCTGTATTTTTGACTAATCATGTATTACCAGAGCTGGATGCGAATCGAACCGTACCCCGGCTCACATGTGATGAACTGAAAATACATCAGGAAAACGGCAATTCGGGGCGATTTTTTCTGCTTCATCTTTTTCATCGGGGAAAAAGATGAAGTGGTGCGCGTTCACCAATGCCACTTGGATCAGCGCAACAAATAAGCGTACCAAACCAGCCACAACAGTCAAAAGCTTCCACCAGTCCGCAGACCCTTTTTTTCGTCTCTCTGTAACCTATTGATTTTAAATCCCCAAATCGGACGCTCAAAAAAAGGGGGTTTTGCGAAGTTTTCAGCCACATCCCTGTTGCTTTCTGGCCTGAGCGGCTATACTGCAACG # Right flank : GCTTCAGGCCGGGCAGAGAACCGTAGCCAGCTCAAAATCACGCCTCTGCAAGCCGCGCCCGGCAAACCTGTTCTGTTAAAATTTTCAGCTTTTCTGCCTCTTCAGCCAGATAAACCAGCTCTTCTTCGGTGATCTCATAATGCATCGAATAACGGGCATCAATATACGCCCGTTGCAGGCGGCGGAAGCTGCGGCGGTGAAATTTGTCGTCCATCGGGAAAAGACCGGCAAAAGCGATTTCCTGATCGGCACAGTATTTTTTCAGCTTCTCAATATTGTGAGTTTTGGGCAGATAATTGGTCAGTGTCAGTAAGGTACAGGCGAAGAATCGTTCTGTCGATTGGTGTAATTCAAACGCCGCTTTACTTAACCACTGACGTTCCAAATCGTCATGATATGATGTGAAGAATTGCTGCGCACTGACAAACCAGTGATCAAAATGCCCCTGCGCAATCGCCCGGCGCTCTTGGGCAGTTAAGTCTCCCGGCTGGGCCAGTTCC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 206732-206463 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQXZ01000005.1 Vibrio aerogenes CECT 7868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 206731 28 100.0 32 ............................ AGTCAGGCCAATGCATCGGCGACTTCAGCCCA 206671 28 100.0 32 ............................ TTGAGTCAGTCAACATTACCGTCAACACTGAA 206611 28 100.0 32 ............................ AGGCGACCACAGCTACGGCTCAGGCAGAGTTA 206551 28 100.0 32 ............................ TGAGCAATTTGATCGACACTTGAACGCTCTCC 206491 28 96.4 0 ...........................T | C [206467] ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTTACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCGCCGAAAAAGTCTTTTTGCAACTCGTTCCCATGCTCCGCGTGGGAATGCATACCGGGACTTGAAGAAGACAGCTCACTCCCCTTCTTGCCGCCTGATGCAAATTCACGACACTAAGGGTGTTGAAATTCAGGGACGAATTTCAAGGTTTGCTGAGCAGGATGCGAATCGAACCGTACCCCGGCTCACATGTGATGAACTAAAAATGCATCAGGAAAACGGCAATTCGGGGCGATTTTTTCTGCTTCGTCTTTTTCATCGGGGAAAAAGATGAAGTGGTGCGCGTTCACCAGTGCCACTTGGATCAACGCGACAAATAAGCGTACCAAACCAGCCACCACGGCCAAAAGCTTCCACCATCCCTCAGACCCTTTTTTTCAACCCCTCTGTAACTTATTGATTTTAAATCCCCAAATCAGACGCTCAAAAAAAGGGGGTTTTGCGAAGTTTTCAGCCACATCCCTGTTGCTTTCTGGCCTGAGCGGCTATACTGCAACG # Right flank : GGTTCAAACCGGGAAGAGAGCCGTTACCAGCTCTTCTTCGGTGATCTCATAATGCACCGAAAGACGGGCATCAATACAGCGTAACAATAACGTTCTTACTCAAAACTAAGTTAATCCAGAGCTGCTTTCATGCGGCTCTTTTTGCCTGAGAGATCACTGAGATTTATCTTATTTAAATGCTGTGTTTTGTTGCCTTTGGTTCCATATCGATTATTCCAGATAAATAAGAGCTTATTTCCCCGGTTTGAAGCAATAGAATTTCAAAATAAACCATTCAACATAATCATTAACGCTGGCTCAGGTGAACATCATGAAAATAAATTATATCAGTATCACCAATGGGGGCTGTTATGCCTAAAGCTGCCCGTTTAGGTGACTCGTCTTCAGGACATAGTTGCTTTCCTGCTACACCGATTGTTGCAGGCAGCCCGGATGTGTCGATTAATGGCAAACCAGCCGCCAGAAAGGGAGACACCGTAATTCCGCATGGATGCCCCTGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //