Array 1 51-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJF01000010.1 Salmonella enterica strain BCW_5835 NODE_10_length_124058_cov_3.65943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 112 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 173 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 234 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 295 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 356 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 417 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 479 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 540 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 601 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 662 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 723 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 784 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 845 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 906 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 967 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17127-17931 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJF01000010.1 Salmonella enterica strain BCW_5835 NODE_10_length_124058_cov_3.65943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17127 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17188 29 100.0 32 ............................. AACCGCTGGCGTGCTGATTGGTCTGCAACCAC 17249 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17310 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17371 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17433 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 17494 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [17536] 17536 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17597 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17658 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17719 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 17780 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17841 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17902 29 96.6 0 A............................ | A [17928] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1023-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJF01000020.1 Salmonella enterica strain BCW_5835 NODE_20_length_89348_cov_3.60026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1022 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 961 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 900 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 839 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 778 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 717 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 656 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 595 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 534 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 473 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 412 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 351 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 290 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 229 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 168 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 107 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAATTATTTCTGTGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //