Array 1 65243-71873 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031032.1 Runella sp. SP2 plasmid pSP2_2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 65243 37 100.0 35 ..................................... CATCAATCTCGTCTTTTACTGACTTGGCCTTTGGT 65315 37 100.0 36 ..................................... CTAAGAGTCATTGGGTCTATGGAGTCAGGATCCTCT 65388 37 100.0 36 ..................................... ACTTGAACCTGTAACCTACTGATTATGAGTCAGTTG 65461 37 100.0 33 ..................................... TTTCAATTGGCCATATTTATTCACTTTTTTTAA 65531 37 100.0 37 ..................................... TTAACGAATACGGGCTTAAAAGGGGTGCAGCTCTGCG 65605 37 100.0 33 ..................................... CCTACTACATGTTTTCATGGACTTTATCCTCAT 65675 37 100.0 36 ..................................... TTTTTTTGTGTAAAGTTTTCATTTTTTTACTTGTTA 65748 37 100.0 37 ..................................... TGTACGTTGAAATACTAAGCATCACGCAACATTACTT 65822 37 100.0 36 ..................................... ACCAAATCAAAGATACCACACTGACCTGACTCAATC 65895 37 100.0 36 ..................................... CGCCACAATAAACACAAACACTATTTTTCTTGTCAT 65968 37 100.0 40 ..................................... CCCGCCTTGCTGCTTGCTGTTATGGGTAGCAATGTGTAGG 66045 37 100.0 37 ..................................... CATCTGGTAGCCATGCACCATCGAAATACAATTGAGA 66119 37 100.0 39 ..................................... CCATCATTATGATGTTGCAAGACTGGAATTTTTGGGTTT 66195 37 100.0 39 ..................................... AAAGCTGACAGGGTAAATATATGATTCTAGTGGCATCAT 66271 37 100.0 39 ..................................... TTTCGCCAAAAATATGTCGAATATTCTCTGAAACTAGGT 66347 37 100.0 36 ..................................... AAGATAAGTTACAATTCAAAGAAAAATTTCAAATAC 66420 37 100.0 39 ..................................... AATAAAACGGTAGTATCTAAACGTAACAACGCCTATACA 66496 37 100.0 37 ..................................... CCGATTTTAATAATAGTAGAGTTGGGATAATCTATCT 66570 37 100.0 36 ..................................... TACTTTCCCATTTTTCTCTTTCTACTTTATAAGCTT 66643 37 100.0 35 ..................................... AATGTCATAGATAACATAGCAAGCGAACGCCGTTG 66715 37 100.0 38 ..................................... TCGTACACCTGCGAACTTATTGGACCAAGTAGTCTATT 66790 37 100.0 37 ..................................... AGTATCCAAAATGATCTACAAAGTAATTTCCTTTGTA 66864 37 100.0 36 ..................................... AAAAAAAGAAACGCATCAAATGACACGTTTCTTTAA 66937 37 100.0 40 ..................................... TCCATAGTAATTTGTAATGTTATTATTCTCCTTGGTAAAA 67014 37 100.0 37 ..................................... TGCGTTTTAAGTAGGTAAGATTCTCAACAAGGTTAGA 67088 37 100.0 36 ..................................... AAACTTTGCAACTCTGATACCATCACTAGAAAAAGA 67161 37 100.0 38 ..................................... TATCTCACCTACTTGTGGATTGGGAATAAAAATTACTT 67236 37 100.0 35 ..................................... CACATCAATCATCATCAATCATTATTCCTCAATCT 67308 37 100.0 38 ..................................... CGAATTTTATCTAAATGACTGTCAACAATTTCTGAATT 67383 37 100.0 37 ..................................... AATTCCATGATTTGTAATCCAACTCTCTCCGTTTCCA 67457 37 100.0 37 ..................................... TCAAATTTACCCGCCAAAAACTGTAGTTTCTTCTTCT 67531 37 100.0 37 ..................................... TATTCGGTAATATCTTTATCACATCCGTCGCAAAGTA 67605 37 100.0 38 ..................................... TGCCTTGACGACCAACGCCTCCAACGCGTCGCCAAATT 67680 37 100.0 38 ..................................... AAATACGTGTTCGGGACTCATGCCAACTTTCATCAACT 67755 37 100.0 38 ..................................... TTTGGAACAAGTTTGTCCATAACATCTCCTTTAACTCT 67830 37 100.0 37 ..................................... CTCAGATGTCTGCACAATACACATGTATAAATACACA 67904 37 100.0 38 ..................................... TTTAAATTGAATTTACCACTCTGCTTTTGCTAAATATT 67979 37 100.0 33 ..................................... TCTAACTCTTCTACAATATAAGCAGATGCAAGT 68049 37 100.0 39 ..................................... ACTTATTGGCGGCTGCGTTGACAAAATCAACGTTGTTTT 68125 37 100.0 36 ..................................... ACTTGAATGCCCAAAATATAGGGCTGTGTATTTACC 68198 37 100.0 37 ..................................... TATACTAATAGAATATTCTTGACGAATTTGTAATTTT 68272 37 100.0 37 ..................................... ATTAGTAGCTGGAGCATCCCACCCAAATTCATCTCCA 68346 37 100.0 37 ..................................... AAGCATGATAATTTCCTTTTTCAATTAATAACTCCAT 68420 37 100.0 36 ..................................... CTTTACAGCCTCATACCTAGAAGCTGCAAAGATTGT 68493 37 100.0 39 ..................................... AGACTGCAAAGATTGTCAACCTGAACTCGTAATAGTTCT 68569 37 100.0 38 ..................................... CGTAAGATTTACTTGCCATAAGTATGGATATACTCCTG 68644 37 100.0 37 ..................................... AATCATCATCAATTACACTTCACTATTTTTTTCCATA 68718 37 100.0 38 ..................................... TTGCTTTTGTAGCAATCTAATAACTTTCTTAGTAAAAA 68793 37 100.0 38 ..................................... TTAACCAAATAAATCCACCTGTTTTTCAAATCTTTTTT 68868 37 100.0 34 ..................................... TCGTATATTTTACCTCTTAGACGTTTTGGCACCG 68939 37 100.0 35 ..................................... AGTTTCTGCTGCCCGCTATAATTACTTTCATAGTG 69011 37 100.0 40 ..................................... CGACTTGCCGTCTTTTGTACTGTTCAAGATGTCAAATAAC 69088 37 100.0 36 ..................................... GCCAGTAATCTGACACAACGGTGAACCCCACTGATA 69161 37 100.0 38 ..................................... TTGATTTTCGTATAACCATATTGCTATTCTAGCATGAA 69236 37 100.0 38 ..................................... GTCATTTTGTTGTGTCGTTTAGAATACTGGACAAATCC 69311 37 100.0 41 ..................................... GATAAGACATACAAGGCTTTATCATATTACAATAAAACCAC 69389 37 100.0 34 ..................................... ATACACATGTACACCTTTGTGTTCGACGGTCTTT 69460 37 100.0 40 ..................................... TTTACGGCCATACTCTTCAATAGGCTCAAAGAAATTCATA 69537 37 100.0 36 ..................................... CCATTAACGTTATTATCTATACGTTTAAAATCTTGC 69610 37 100.0 39 ..................................... AAAATGTAATCTAAATTCCATAATTCAGGATTACATTTT 69686 37 100.0 41 ..................................... AGAAACCTGGTATACAATACCAATAATTCGAGCCACCTTCT 69764 37 100.0 39 ..................................... CAAACAGGTTCACGACCTGTAACAGTGTACACAAAGATA 69840 37 100.0 40 ..................................... ATGCCGAATAGTCCTAGTAATAGGTTGTCTTGTTTTCTCA 69917 37 100.0 37 ..................................... TGATACTATTTTTCCGAATGGTGAGCCGTCTAAGAAG 69991 37 100.0 37 ..................................... ATGTCGATACTAAGTTTTCGTAAAAGCAAAGAAATTC 70065 37 100.0 41 ..................................... TGTTGCTTCGCCTGTCAAAATGTTAAGGCTGAAGTTGTTAA 70143 37 97.3 35 ................................T.... ATATCATTAGGTATTTAAAGATAGTGTTGGAACTT 70215 37 100.0 36 ..................................... AATTTACTTCAGCTTTTATTTGTTCGGTGGTGTAAT 70288 37 100.0 36 ..................................... TTCAAGCTAAATTTAGGATTGTACTTCTCTTAAATT 70361 37 100.0 36 ..................................... ACAACACTTACAAACCCAGAGCTTATCATAAAGCTC 70434 37 100.0 38 ..................................... TTTTGTTCCAAAGAAAGAACAAAGTACTCCTTTGAGGC 70509 37 100.0 38 ..................................... ATCAATTGAGAAGGAACTGAATACGAATTCCTGACCCC 70584 37 100.0 36 ..................................... ATGGTCTTGGGGCTTCTATAAGAAACTTATCGTCAC 70657 37 100.0 39 ..................................... ACTTCTGCCAAATATTCTTCATGGACAGACCCTGGTATT 70733 37 100.0 34 ..................................... ATATTCTTTATTTCTGATAATGCCTCTTGGTATT 70804 37 100.0 37 ..................................... TGAATCCAACTTCTGTTTTTTTAAGATTGTAACCTTT 70878 37 100.0 36 ..................................... AATATCTTCTAAGGCCAAAAGTAAAGGAGGTATTTT 70951 37 100.0 38 ..................................... TTGTTTACGTAAAATCCATTTATTTATGACTTCACCCA 71026 37 100.0 35 ..................................... TTCTGAAAGATGTTCTTTCAAAATTTTAGCAAACT 71098 37 100.0 39 ..................................... AGTGCAGATTGTTCCTAAAAAGATATTGGCTTTCAAATT 71174 37 100.0 37 ..................................... AAATTTCACTCAGAGAATATCCCATTTTGATAAAGTG 71248 37 97.3 39 .......A............................. TTTGGCTTTTTTGCCTCCAAAACGGTTTCAGTGCCGAAT 71324 37 100.0 37 ..................................... TTAGAAAATGAGTTACTTGTCTATTCACAAACTCCAA 71398 37 97.3 36 ............................A........ CTGATTGGTTTCTCCCAATCCTTGCGAACCCAAAAG 71471 37 100.0 36 ..................................... TCCAAGTTATACCACCAACGAACACAGAGTCATTAT 71544 37 100.0 37 ..................................... AAAGTCTAACAATTCTTTAGTAATCATATTTACCTTT 71618 37 100.0 35 ..................................... AGCCTAAAATAGTGTCAAAAACCCGTGTCACGATA 71690 37 100.0 36 ..................................... TACCACAAAGGTCGCCACGGAGAATCGCGGTACAAC 71763 37 100.0 37 ..................................... CGAACGTGGGATACCCGCCTCATTCAATTCCTTGCTT 71837 37 97.3 0 .........G........................... | ========== ====== ====== ====== ===================================== ========================================= ================== 90 37 99.9 37 GCAACAACCTCATTTCCAGTAGAATAAGGATTAAGAC # Left flank : GAGAAGCAAACCGCCCAATTTTTCGTGGATGAAGCTATCAACGGCGGATTTTGTTATGCCAAACTCGGGGTAAATGCGCCACAAGTTGGTCAGGCTTTTACATTTTGGTTACAAGAAGTAACCCACAAAGACGGGAAATACTGGAAAGTAGATAAAGTGGCACGTTGTGAAGGGCAAATTGCCCCCAACCAAATCAAATCATTTAACGGGCGACTTCAAGTGAAAGGCCGAATTGGGTTTGTGGGCGACGTATTTATTGACATACCTGCGATTGATGCAAGCCTTTCACATGCTCAACTGGTATCAGGTACTGCTGTCAGAACGTACAATCTCAAAAATAAGGAATGGGGTTGGAAGGCAAACAAAATAAAAAGTGTAAATTTGGCTTAGAAAGTTAAAGTAAACCCTTAAAACCACTGTACATTTGAATGATTCAATATAAATATTTTTATTTTTCAAACTATAATTCATTGATTTTCAGCTCAAAACTTTTGGTTGCG # Right flank : CAAAATTGGTCTTCAGTAATATCAACTTCATTACAAAAGCAAAAACCTCATTTCCAGTAACTTGTCAGCCCGATAAAAACAAACAACGGCGGAGCAATTAGCCGAAGTGTTTAAGGTAGGACAAACAACAATCAAACGCGATGCAGAGTTTGTTTGCCCAAGGGCTTGAAAAAACTTAGCCATGAGCTTAAAACTTCGGTACTTGGTGGCAAAGTAAAATTGAATAAAGGATTGATTCAACAATTCGCCAAAATTCCCACCCTAGACACACAATATACGACCATCGAATCAGTAAAAACGTTTTGACGTGAAGAACACCGTTGCCTACGTCTGTTGCTAAAGTGAGCCCTGAGGAAGAACTCATTTAGTCCGTCACGGAATTGGTAGGAAAGCTCAAAAATACAAAAAAGCGAAAAGAAACCTGCGATTAGCTGATTGCACTTGCTTCGAGTTTAAAAGTGCTCGATTAAGCACACCTTACCGTCGCTTTCTGTTCACAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAACAACCTCATTTCCAGTAGAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 73295-72434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031032.1 Runella sp. SP2 plasmid pSP2_2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 73294 37 97.3 38 ........................T............ TTTAAAACTGACAAATCGTTTAATGGTGCTCTCCAAGG 73219 37 97.3 37 ........................T............ GCCTCAACTAGCATTTCCAGCGCCAAATAGGAGTACT 73145 37 97.3 36 ........................T............ TTCAATTTCAAAAGCACTTGGCCATTCAAAGTTGAG 73072 37 100.0 42 ..................................... ATTATTGCATCGGCACCAGCTTCGCCGACATCGTCCGCCCGT 72993 37 100.0 38 ..................................... GGTGGAAAGATAAAGAAAATAACAGAGAGGCAACAGCG 72918 37 97.3 40 .......T............................. CCATGAACTTCAAGAATTACTTTTAGTGCGTCTTTTGCAT 72841 37 100.0 38 ..................................... TAAAATTTTCTACAAGTTCGACATTTGTTTGGTTGTCG 72766 37 100.0 38 ..................................... AGATACAGTGTTGATTCAAATCTATCATCGACCTCCTT 72691 37 100.0 36 ..................................... AGGTTTGGGAATGGTTGAAGTTCCGCCCGCCGATGC 72618 37 97.3 38 ....A................................ AGACGCCCTGTAATATGTGTTTGGCTTACAATCATTTC 72543 37 97.3 36 .........T........................... TCAGCCTATTGGTAATGGTGGTCATATAAAAATGTG 72470 37 91.9 0 .........T........................TG. | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 98.0 38 CTTCCAGAGCAATTTCCAGCAGAACAAGGATTGAAAC # Left flank : ACAAATTTGCCGAGTACAAAGATCGGGTCTATGAAACCTACCAAACGCAGTTGTACTGTTATGCGTGGTTGATTGAAGAAAATTTTGGGAAGAAAGTAGAGAAAGGATATTTGGTTTATACCCGTAGTCGGAACAAATTGGTGGAAGTACCTATATCGGAGGATAATATACGTAGTGTGAAAGAGGCGGCCAGAGCGATAGAGCACATTATTGGCAACAACTTTTACCCAAAAGCGACGAAGTATAAAGCCCGCTGTGTGGAGTGCACCTACCGAAACCTGTGCATACGATAAGAGTAAGGTAAGAGAGTTCCGAGGCAGAATTTATTTTAAATGCTCAAAAATAAGAAGGTAAATAGTTTGTAATTAGGGAGTTATGGATTCGGAAAAAAGGAAGAAAATGGCAAAAAAAGAGTTCATTGACATACTGTTTTTAAGAAAAGGAGGCAAAGTAAAAGACAGTTATTATATTTGTACTCAGGTCATTAGCGCAGCTGACGA # Right flank : AAATGCGCTAAAAGAAAGTTAATCATTAGGAATAATATTTTTATATCACTCTTTATAGATATTGTGAACAGAAAGCGACGGTAAGGTGTGCTTAATCGAGCACTTTTAAACTCGAAGCAAGTGCAATCAGCTAATCGCAGGTTTCTTTTCGCTTTTTTGTATTTTTGAGCTTTCCTACCAATTCCGTGACGGACTAAATGAGTTCTTCCTCAGGGCTCACTTTAGCAACAGACGTAGGCAACGGTGTTCTTCACGTCAAAACGTTTTTACTGATTCGATGGTCGTATATTGTGTGTCTAGGGTGGGAATTTTGGCGAATTGTTGAATCAATCCTTTATTCAATTTTACTTTGCCACCAAGTACCGAAGTTTTAAGCTCATGGCTAAGTTTTTTCAAGCCCTTGGGCAAACAAACTCTGCATCGCGTTTGATTGTTGTTTGTCCTACCTTAAACACTTCGGCTAATTGCTCCGCCGTTGTTTGTTTTTATCGGGCTGACAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGAGCAATTTCCAGCAGAACAAGGATTGAAAC # Alternate repeat : CTTCCAGAGCAATTTCCAGCAGAATAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 2275070-2274774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031030.1 Runella sp. SP2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2275069 31 100.0 34 ............................... AAGTTGCTTGGCGATATGATACGTAGCCCTTTCA 2275004 31 96.8 35 ..............................T TCTTCGTATGTAAGGGTTTCTTCTGGTAACATTAT 2274938 31 100.0 35 ............................... TTGCTCCAGCTGCTCGCCCGCTTTGGAAATTGCGT 2274872 31 100.0 35 ............................... AATAAAATGTCAAAGGTACTTGAACTGCAGGAGCA 2274806 31 100.0 0 ............................... | AG [2274777] ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 35 CTTTAAATCGTACCATTTTGGAATTGAAACA # Left flank : CCCGCCCCCAATGGGGGAGTAATTTTAATTGCTATGTATGTGATATTGGTGTATGATATTGGAGAAAAACGAGTGGCAAAGATGCTGAAACACTGCCGCAAGTACCTAAACTGGATTCAAAATTCGGTGTTTGAAGGAGAAATTACGGAAGCGAAGTTGAAAGAAATGTTGATGGGGGCGCGTGCGATTATGAATGAAGAACAAGATAGTGTCATCCTCTTTAAGAGTCGGAACGAGCGATGGCTCGACAAAGAAATTATTGGGGTAGAACGAAGTTCTATTGATAACTTTCTTTGAAGGAGAAGTCGTCGAAGCCACAAAGCGGCTCAAAAGTTCGTTGACATATTGACTATAAAACGAATGTTGTCGAGGTAAGTGCCTGATAATGAGATGTCGTCGATGGTCGGGTAAAATCGAGCCATTGACCATCGACGATTTTTTAGTTGAAAAAGACGCAAAAAAACCTTAAAATTGAGCCAAAATAGCCGTTTTTCCGACGG # Right flank : GTTTAATTCGTGAAGAAGAGACTGCTTAGAAAAACAAAAAGTGCCCTAAAACGAGTTTAAGGCACTTTCGCGATGAAAACTTTTTATGAGTGACCCCGTTAGGATTCGAACCTAAGACCGACAGATTAGAAATCTGTTGCTCTATCCAGCTGAGCTACGGGACCTGTTCTTTTCGAACGCGGGTGCAAAAATAAATGTTTTTGCGACTTTTAACAACATTCTCACCAAAAATTGTGTATCCCTCCCGAATCTGCCTATTTTTGTGACTTACTAAAGACCCACAAACCAACTATTTAGCGTGTATTTGTATTCAGAAAAAATTGTCGAGGACTTTCAACAAATTTTTGGAAAAACTCCTTCCTTCGTCGTGCGTGCCCCTGGTCGCATCAATCTTATTGGTGAACATACCGATTATAACAATGGGTTTGTACTACCCGCGGCCATCGATAAAGCAATCTATTTTGCCATTGCGCCCCGTACCGACCGACTTTGTAAGGTGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCGTACCATTTTGGAATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 6399943-6399214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031030.1 Runella sp. SP2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 6399942 46 100.0 29 .............................................. TTATTACAGCGTTTGTAGTGCATCCTTAT 6399867 46 100.0 30 .............................................. TCGCGAATTGCTTCTACTTTCTGCCCTTCT 6399791 46 100.0 30 .............................................. TAGTCTTATGCTCTTACGTGCGCTTCGCCT 6399715 46 100.0 28 .............................................. CAACTTCTGTAATTCTGAATAAGGCCCT 6399641 46 100.0 30 .............................................. CCAGAACATTTCGTAAAAAGCTTCCATTGA 6399565 46 100.0 30 .............................................. TCGCGAATTGCTTCTACTTTCTGCCCTTCT 6399489 46 100.0 30 .............................................. CTACCCACGGTTATGTTCTGCGAGGTTGCG 6399413 46 100.0 30 .............................................. TCAACCTTCTCTATTGTAGTTGAAAGTTTT 6399337 46 100.0 30 .............................................. AAAGCACTTCATCATTGCGAAGTGACAGTG 6399261 46 95.7 0 .......................................AA..... | TT [6399219] ========== ====== ====== ====== ============================================== ============================== ================== 10 46 99.6 30 GTTGTGTTAAATATCGTCAATGTTCAATTTGAAAGCAAACCACAAC # Left flank : TAGACCTGTAGTTTTCCTTTCAATTGTAAAACGCAAAAATAGCCTGTTATTGGATTTGTCAAGGGTATATAAACGGCCTCGTACCTCAGCCGCCCTTGACAAATCCAATAACAAATCAAAAAAGCATTTGAAATCGAAAAGAAAAACTAAATTTGACCCAAATTAACCACTAGACAGAGTTTATATTACACTCCCGCGCACATCGAAGCCTATCATTCCATTATGGAAAGTTGTGTCTGTCAAAGGTTTGAGTTTAACGATTTGAAGCATGCTCGAAAAACATTGGAAGACTTTAGAAACTTCTATAATTTTGAGAGGATACATGGAGGAATTGCTTTCCAAAGTCCTTACAAGTATTTGCTCAAACATAACATTGATATGAAAGAATTAACGCAAAATAAGACTAAAATCTGTGCTTACAGTCTCTAACTTTCTATCATTTACGTGTCCAATAATTAGCGGTTAGCACACTTAAATGGGCATCCTCCGACGTAAAAACA # Right flank : AATCGAAACGACATCCGATGGTAAGAACAGGGACCAAACTCTCGAATGCCTGCCCGATGCACGGGCGTGGGGTAGCCTACATTTCTTTCCCAACCATAGTGCGGAAACTCCACCGCGAGGCGCTCCATGAGGTCGTCGCGGTAGGTTTTGGCCAGTACCGAAGCCGCCGCAATGCTCATAAACTTGGCGTCGCCTTTGACGATGCAGGTGTGGGGTAAAAACGGGTAAGGCGTAAAGCGATTTCCGTCCACCAACAAATGCTCGGGGCGTAGCGCCAACTGATCCACGGCGCGGTGCATGGCCAAAAAGCTGGCTCTGAGGATGTTAATTTTGTCAATTTCTTCGTTAGAAACTTCCGCGATGGCCCAAGCCAAGGCGGCCTCTTGTATGTCGTTGCGAAGGGCTTCGCGTTGATTTTTATTCAACTGCTTCGAGTCGTTAAGCAGTTCGTTGGTGTAGTCTTTGGGAAGAATCACGGCCGCTGCTACCACAGGACCCGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTAAATATCGTCAATGTTCAATTTGAAAGCAAACCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 6402773-6403655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031030.1 Runella sp. SP2 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 6402773 46 100.0 29 .............................................. GCTTGAGCAAGAACTTATGCGCCCAAACA 6402848 46 100.0 31 .............................................. CGGGGGGGCGGTTTCGGAGGCGTCGGAAGTA 6402925 46 100.0 30 .............................................. CTCTTCTGCTTAGCTATGCAGTACGAATCG 6403001 46 100.0 30 .............................................. CGACGAACTAACTCCAAAAAAACTAAGAGA 6403077 46 100.0 30 .............................................. TTGTGCAGACAACGAACATAGTCATTGTGC 6403153 46 100.0 30 .............................................. TGCCGCCGCTAAGCAAAGGATACATTTCTG 6403229 46 100.0 30 .............................................. AATTGGGTACACTATCGAAGACCCTGAAAG 6403305 46 100.0 30 .............................................. TTACTCAGCAGTCAGGAAAAACGTCAGCTT 6403381 46 100.0 31 .............................................. CCAAGAGAGATTTTAGAGAAAGCCATGGCCG 6403458 46 100.0 30 .............................................. CTTCGAGTAAAAGATTAACCGCTACGCTCG 6403534 46 100.0 30 .............................................. CGCTGGTGTCGGAGTACAATAAGCTCACGG 6403610 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 12 46 100.0 30 GTTGTGGTTTGCTTTCAAATTGAACATTGACGATATTTAACACAAC # Left flank : TATGGTTTGCGCCCAGATTTGCCTAAAGTAGCTTTGTAATAATAACTGCTTCTGGCGATAAAACAGGATTTTAGAACGGTTTTAATACTACCTCCTGAAAGAATAAATTCATTGGCTACTTCCAAGCGAATTTGCTTACTTAAAGGCTTTTTTTTAACAAAGCATCCTTGATTCTAAGTGATAATTCTTTCTCAGCGATGATCTCTTTATAAGCTTGAATCTCCCGCTGAAAGCGAAGAATTTCTTTGTCCTTATTAGAGTTACTAACACCCGATGGGTTTGAAAAACCTCCTTTTTCGTAGTGGGAGACCCAGTTATAAATGTTCGCACTGGAGACGTTAAACTCCTTAGAAGCCTTAGCAGCTCCGTGTTCTTTGTAGTACTTCACTATGGTCAGTTTTTCCTCCTGACTCCATGATTTTTGATGTTTTCCCATTGAATCACAAATTTAAAAGTTGTACCCTAATTTGTGTCCAACTTTTTAGCGGGCTAGATTCTAA # Right flank : CAGAACGTTATTTATCGTTCAGTAAATCAACAAGTTGCCAAGTTTTGACAAATTAAAAAAGAGTAAGTTGTTTAGACGTTATTTTCAAGAATAAAAGAGTGGTACGCATAAATCTGAAATACATTTTTTCAAATTTTTACCCGCAGATTTCGCAGATTGATAGCCGCAGATAAACGCTGACGAATAGCTTCATAAAATACCTTTTCAGCGAAAATCTGCGTTTATACTATTCAGCGGTCTTCTGCGGGTAAAATAAATTTAAACAGTTACTTCACCAAGTTGGCTTACCTTCACTTTAACAGCCTTTAGCTGAATGTGTGACATCATTAGAAAAGGCATAGATTCACTAAGCGAGAACTCCTTGCTTTCATAACTTGCATTATAACGCGAATGGTTATGTTTGGCAAAAGAGACATAGCCAAAAAGATAGATTTTGCTTTTTATTCCTTCACTCAGTCCTGTTGCTTGATACAGTCGTTTGGATAAATCCTCGGGGTCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGCTTTCAAATTGAACATTGACGATATTTAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //