Array 1 133865-135236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVEA010000004.1 Citrobacter farmeri strain CB00190 CB00190_c0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 133865 29 100.0 32 ............................. CATGTCCTGGCGTTCTTTGCTGTCCCAGTTGT 133926 29 100.0 32 ............................. CGTTCAGGAACTTGTTTTGCAGATTAGTCGCC 133987 29 100.0 32 ............................. CTCGCGTGCCGTGTGCCACGCCGGATCGCTGC 134048 29 100.0 32 ............................. TAGGTACAATTCGAGAGTCGCTTGAAATGACG 134109 29 100.0 32 ............................. CCAGCAGCAATTAGATTTCTCAGCCAGGCGGC 134170 29 100.0 32 ............................. ATTAAACACCCAGCTATCCCTTGCTGCTCTGG 134231 29 100.0 32 ............................. CCGGACGCGGCTGATAACTCCTAAAACTACTT 134292 29 100.0 32 ............................. GCTCCTTTTTTATTGCTGGCATTCACCATCAA 134353 28 96.6 32 ........-.................... AACAGTGTTAGGAGTGTTGAGGGTAGCGCCAA 134413 29 100.0 32 ............................. GTCATTCATTGTCAGCGCTTCAGCGTGAGCGC 134474 29 100.0 32 ............................. TGACGGTCGAGATAGTTAATCGTCGACGCAGC 134535 29 100.0 32 ............................. AAAAAACAGGCTGACGCAGACGCGGCGCTGCA 134596 29 100.0 32 ............................. ATTACACATCCCGCCTAGTGGATCAGAAATGG 134657 29 100.0 32 ............................. AGATCGCCGCCGCCACCAAATACCTCATTTCA 134718 29 100.0 32 ............................. AGATCGCCGCCGCCACCAAATACCTCATTTCA 134779 29 100.0 32 ............................. ATGGCGGCCATCAATCTACATGCCGCGCTGGG 134840 29 100.0 32 ............................. CGTAGCAGACATGATCCGCGATTTGAGTATCG 134901 29 100.0 32 ............................. GGATATGACGTGGCAACAGTACGCAGTAGCGT 134962 29 100.0 32 ............................. CGAATTTATACGGAATCGGAATTCGAGCGCCG 135023 29 100.0 32 ............................. ATTGAACCTGATTGCAACCACGACGGCCAGGC 135084 29 96.6 32 ............T................ GGTTTAATTGTCAAGATGAATGTTTGTGACGG 135145 29 89.7 32 .........A...TT.............. ATCTGTGTTGTCCCTGGCACCTGGTTATTGTC 135206 29 75.9 0 .........A.T.GCA..........A.A | AA [135227] ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGCCAGATAGAGACCAGCGGTACGCACGAAGTGCGCTGCACACCCAATACCTGGGTGACCGTTTCTCCGAAGGTGAACATGCGTGGTGGTTATGACGTTCTGTCACAGGCGCTGGAACGCGCAAATGAGATCAAACATCCGGTTGGGCGCGTACGTGATATTGAAGCGCTGGACGAACTGCTTGCCACGCTGAGCGACGACAAACCGCGGGTGATTGCGCTGCAACCTATCAGTCAGAAAGAAGATGCCACACGCCTGTGCATCGAAACCTGCATTGCGCGCAACTGGCGCCTGTCGATGCAAACACACAAGTATCTGAATATTGCCTGACATGATTAACTTTCAGTCGCGATTTAATCGGTAGAATGCGATAGAGGTTACAGTTCCTTTTTCTCTATTCCTTAAAATCAATGAGTTACTGCTCATTGTCAATCTGGATAGAATCGGTAGAAATTGAGAGTGTTTAAAAATATCCCATATTCAATGGGTTGTATTTAGA # Right flank : AACCAAAACCGTCATCCATTCAGGTGGATGACGGTTTTATGCTATTAAGCGCCTGTTTCAGGTTCAGACTGGAGATGGAAACGCTGCATAAGCTGGCTGCCTTTCCAGCCATACCATCCTACATAAGCGAAACAGACCACGGGGATCGCATAGGCGAGTTCGACGGACATTTCGCGGGCGACCAGCCCCATCAGCAGAGGGATTGCGGACGCGCCAATAACGGCCATAATCTGCAGTGACGTCCCGCGTTTCGTTTTTTCACCGAGATCTTTCAGGCCCAGCGCCATTGTGGTTGGCGACATAATCGACATAAAGATAAAGGTGGCAATCAGCGCGATAATCGAGACGTAAGGAATACCGATGACAACCAGAGCGGAAAGCACCACGTTGATTAAGCCGTAAATACCCAGCAGGCGATGAGGCGAAATCCAGCGCATCAGCACCGTGCTGATGAAGCGACCTGCCATGAAGCCTGCCAGCGCGATGGATAAAAACACCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 159502-160689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVEA010000004.1 Citrobacter farmeri strain CB00190 CB00190_c0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159502 29 100.0 32 ............................. CCCCTCCCTTTTTTAGTTGATCATTTCCTTTC 159563 29 100.0 32 ............................. CCCCGCCTTAAACTGGTTGCTCTGGCCTTTTG 159624 29 100.0 32 ............................. AATTTTGCCAACAACACCATCGTTTACGTGGC 159685 29 100.0 32 ............................. TCGATTAGCGCCAGCGGACACCAGTCCCCTTC 159746 29 100.0 32 ............................. AATTTCGCGGAGTTCCCTGTGCTGGAAAAAAT 159807 29 100.0 32 ............................. CCTGTTATCTCTCCACAACTTGATCCTCGTGT 159868 29 100.0 32 ............................. TTTCTGGCGCCGCCGTTCTCCGTTCTGAATGC 159929 29 100.0 32 ............................. TAATTTACTGCGTGACCTGAAATCCAACCTGC 159990 29 100.0 32 ............................. GTACTGATCAACTTCCGGCCCACGGTTAGACC 160051 29 100.0 32 ............................. GTTCTCTGTCAGTAGTGATCGACGATGAAAAC 160112 29 100.0 32 ............................. CGGCATTACTACAGCATAGCGCCGAAATTTTT 160173 29 100.0 32 ............................. GAAAACCGACTCAACCAAGTTTTACGCTCCCC 160234 29 100.0 32 ............................. CAACGCGTTTCACGTTCAGCTCCATTGCCGAT 160295 29 100.0 32 ............................. CACCCGTACATGTTTGGTGCTGGATATAACAG 160356 29 96.6 32 .C........................... TCACCGCCCATCACGCGCTTCACGGCGGCGGG 160417 29 96.6 32 .C........................... CTCATTCCTGATTGATGATTCAGAGTTGGACG 160478 29 96.6 32 .............T............... CGGTTATCCCGCAGCATCGACAGCGACCGGGC 160539 29 100.0 31 ............................. TGCTCGAGTGGATTCAGGATTGTGCCGATTA 160599 29 96.6 32 ............T................ ATCGGGGAAGTGAGAGGTGGGACGTGGCTTTT C [160601] 160661 29 75.9 0 A.......T..CT...T.........T.A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTTGCCGCGGGGGAAATCCAGCCACCAGCACCGCCGAAAGACGCACAGCCTGTCGCTATCCCGCTCCCTGTATCTCTCGGTGATGCGGGACACAGGAGCAGTTAACAATGAGCATGCTGGTTGTTGTCACTGAGAGTGTTCCTCCACGTTTGCGCGGAAGGCTGGCCGTCTGGTTGCTGGAGATTCGGGCAGGTGTCTATGTGGGGGAGGTTTCGACGAGGATACGCGAAATGATATGGGAACAAATTTCGGGCCTGGCGGAAGATGGCAATGTCGTGATGGCATGGGCGACCAACACGGAATCAGGATTTGAGTTTCAGACTTACGGCGAAAACAGACGCGTTCCGGTAGATTTGGATGGGCTACGGTTGGTTTCTTTTTTCCCCATTGAAAATCAATAAATTGCTTGTTCTTTAATAATACGGAATTGTTTACAACAAGTTGGTAGATTGTTGATGTTGAAGAATGTTTTTGATTTTTAAGTGTATTTTTTTAGA # Right flank : AAAATCGTGATGGTGTTCCTCATTGCATCAGATAAAAATCTGAAAATATTATCCCGTGCTGTTTTATTAATTTCTTTGTTTTACCCTTGGTGACGTTATTGCCGGAGGCAGTGACGTCACTATAAAACTGAGGGATTAAATAGATGAAAAAGACTTTTTTGGCTGCGGTACTGACTCTGGTATCTGGTTCTTCTTTTGCTGCAATTACTGATACTTGCCAGCAATACTTTGATGATGTTGATGCGTTGATTGTTCAGGCATCCAAAACCAGCGATCAGGCTAAACAGCAGATGGAAGCCATGAAACCTCAACTTGAGGAGGCCAAGAAACAACTCGCAGGATTACCGGCTGAAAGTCAGGATGCTGGCTGCAAACAAGGTGCTGCCGCGCTGGTGCAAATGAAGCAGTCCATGGGCATTCAATAATTTATTATAAGAAAACGCGTCATTGAATAAACGACGCTCAGAATAGTGTCACCCTTCGCGTCTTTTGCCAGAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //