Array 1 38832-39400 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXS01000015.1 Pseudomonas aeruginosa strain EML528 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38832 28 100.0 32 ............................ TTTTCGGGCTTGCCGCCCTGCTCTTTGTGCTG 38892 28 100.0 32 ............................ TGGTTGGCTTCCGTGCAGAGCGCGCAATCAAC 38952 28 100.0 32 ............................ TCTCCGCCGTTACCAACGCCATGAACCACGCG 39012 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTT 39072 28 100.0 32 ............................ ACACCGACAAGGCCGTGGCCGCCGAAGCGCAA 39132 28 100.0 33 ............................ ATCGACGAGTTCGCAGCCACCGGCGCCGCCGTA 39193 28 100.0 32 ............................ TCGCACGTTGTGATCCTTGGCTTCGCATCATG 39253 28 100.0 32 ............................ GTCAGCGCGGTGGAGATCGTCACCCGCGGCCG 39313 28 100.0 32 ............................ ATGCTCCTGCGCAACGAGTTGATCGACGTGCT 39373 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACCTTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGACGCTACAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TGATGGCTGCAGTCACTCAACGTGCAATGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 103074-102745 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXS01000050.1 Pseudomonas aeruginosa strain EML528 contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 103073 28 100.0 33 ............................ GCCGTCGGTGGCCAGATCTACGGCGTATTCGAT 103012 28 100.0 32 ............................ ACCGCCCCACTGCTCAAAGGCGCGTGGTGCAG 102952 28 100.0 32 ............................ AGGAAGGCAAGAACATCGACGGCCTGCGCGCG 102892 28 100.0 32 ............................ AGCAGGATGCGCGGCTGATAGCCCAGCACGGA 102832 28 100.0 32 ............................ AGCAGAAAGAACGCACCGAGTGGCATCGCGTG 102772 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGTGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGATGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCAATCCGCGCGCGAACGGCGAGGCTCACCGCCCGTTCCGCTCATCGCGAAACGGCCTCCGATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAATGAGTTGCAAAGACTTGAAAAAAGAGGGTTTCAGACCGGGAACACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACGAAGGCTTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATCACGCCGTCGCGGCTCCAGCCCATGATGTCGTAGTCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCGCAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 174911-175238 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXS01000006.1 Pseudomonas aeruginosa strain EML528 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 174911 28 100.0 32 ............................ ACGACGACGGCCAGCAACAGCGTCACCCTCGG 174971 28 100.0 32 ............................ AGCGGCAACATCACCACCAGCGCGGACATCAG 175031 28 100.0 32 ............................ ATGCGTTCAGAAGTCTTCATGCCGCAGTCCTC 175091 28 100.0 32 ............................ ACGGTGTCGCCGCAGCTTTACGCCCTGGCGTT 175151 28 100.0 32 ............................ ATCGTGATCAATGCCCGCCATGATTTCGCCGG 175211 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCCTGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTGGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATCGCGAGCGATATAAATCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTTGGCCTCCAGACGGTAGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGTAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGGGCCCCCGGAGCGACGATGTAGCGAGGGAACCCCAGTCGCGTAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAGGTCGAGGCAGGCACGACAAGCAGCTAGACCGCCCAGCCAGAAGCCCGCTCAAGCTTTAAGCGACATCCTTCCCCAGCTGTTAACTGCCGTGTAGGCAGCTAAGAAAACGGTCCCTTGCTCGCGCCGACCAGACGTCCCTTTCACTGCCGCATAGGCAGCCTGACTTCCCTCGGACTCGCAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //