Array 1 1912-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPZM01000056.1 Oceanisphaera arctica strain V1-41 contig00056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1911 28 100.0 32 ............................ TCATTCACGAAATCGACCCGGCCAACATGATC 1851 28 100.0 32 ............................ ACTCACCGGCTGCTGCGCAAATGCTCGGTCAA 1791 28 100.0 32 ............................ CACATCACCAATACGACCAGCCACAGGCCAGC 1731 28 100.0 32 ............................ ATGAAGCTGACCTACTACAAGCGCGAAATCGA 1671 28 100.0 32 ............................ GGTACCAGAGAACAGCGAATACATGCGATTGA 1611 28 100.0 32 ............................ AAACCAGGCACCAAGCCAGGCACCGTTCACTA 1551 28 100.0 32 ............................ AGTAGCCGCCGGCTGGTTGATAGCTTGCTGAG 1491 28 100.0 33 ............................ CGGTGCAGGTGGGCCTTGTCGTGGTGCTAGCAC 1430 28 100.0 32 ............................ ATCAAGCAAACCCTGGCAAGAAGGAAACGAGA 1370 28 100.0 32 ............................ AGGCTTCGGCGGTTTCGCGAATGTGGCGCAGG 1310 28 100.0 32 ............................ GCGCTTGCTGCCGGACCCGTCGATGTAGGGAC 1250 28 100.0 32 ............................ CAGCTGGGCGTGGTTCGGCCATTTGTTGAGGT 1190 28 100.0 32 ............................ TCCAACGCGGTGAACAGCCTGCGCGAGCTGAG 1130 28 100.0 32 ............................ GTTTACATTGTGCCGATGATGTGTCGCGAGCA 1070 28 100.0 32 ............................ GTCATGCGCTGGCTGATTTCTTCCACCCAGGC 1010 28 100.0 32 ............................ TCCACCGCCTCCGTGCTGCCGGTCACCACGCA 950 28 100.0 32 ............................ TGAATAGCGGTCGCCGTGTTCGCGTCGTCCAC 890 28 100.0 32 ............................ GATGCCGTAAAAGTATTGTCAGCCGTTGATCC 830 28 100.0 32 ............................ AACAGAAGCAAGATATGATTGGGGTATCAGAT 770 28 100.0 32 ............................ GCCGCAAAGCGAGCCATTGCCGTAGCTGAGAA 710 28 100.0 32 ............................ AAGTGGATTGGGAGCTTGAAAAAGCGGGAGCA 650 28 100.0 32 ............................ GTTTGCCAAATGGCTTGCATCTTTAAATAAAA 590 28 100.0 32 ............................ GATATATAGGCGGGAATAACACGCGACCACAA 530 28 100.0 32 ............................ GCTAATATACATTCTTTATTACCGCCCAATAT 470 28 100.0 32 ............................ TCTTTCGCCAGCTTGTTTTTATTGATCCCGTT 410 28 100.0 32 ............................ TTTTCGACAGCTGAGAGCTGCGGGGCGGAATC 350 28 100.0 32 ............................ CCTCGTGCGAGTGGTGTGTCTGTGGCGTTCCA 290 28 100.0 32 ............................ GGTCTAGGCGATGAGGGATACCGCAGCCGATA 230 28 100.0 32 ............................ ACCAACGTCAGCGTATACAAGGCGGGTATGTT 170 28 100.0 32 ............................ ACGCAACTTACCCAGCGGTGTGAGTACTATTT 110 28 100.0 32 ............................ ATGATTGAAGGTGCGGAGCTGAGCGAGTATCA 50 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 32 GTTCACCGCCACCCAGGCGGCTTAGAAA # Left flank : ACCCATCTTAAGTCGATTCAGCCGGTGCCGGAGTCGGTAACTCATATCGCGTTTGTTCGCAAACGGGTAAAAGGCGAAGCCCGTATCGAAAAAGATATGCTTGCCAAAGCTCAGCGTTGGGCAGAAAAGTCGGGGCAAACTATGGAGGAGTGCTTGCAACAGCTGGAAAAAAGCAAACCGAGTGCCGAGTCCAAGTTGCCTTTTATCTGGATGGAAAGCCAGGAAACCAAAACGCGAGCTCCCTCAAGTTCCGCCAAGTTTCCGATTTTTATTGAACGGATAGAGTTGCAAGGGGCAAACGATGGACGTTTTAACTGCTACGGCTTAAGCGCAGTACAAGGCGAGCAAATCGCTTCGGTACCGCACTTTTGACCTAAAAAATGGCTCTTTAAAAATATGCTTTAAAAACAGATGGTTACAGTGTTGGTGAAAATAAGAGTATTTCTTCATATTCTTATCCAAGCCTTTGTTGTAACTATTTTTTGTGTTAGTTTTCTACT # Right flank : AAAACTCGAATGGACGCGCCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACCCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-991 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPZM01000059.1 Oceanisphaera arctica strain V1-41 contig00059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 32 ............................ CACTACTGTGATGTTTAGGCTCTTGGCTCCGA 63 28 100.0 32 ............................ AAGGTGTGAATGTGAGCGGGAGAGGGCTTGCC 123 28 100.0 32 ............................ CTTCACAAGGAAACCCCATGAGCAAAGACAGC 183 28 100.0 32 ............................ TCACCATTGCCCGGGGCGACGTATGCAAGGGT 243 28 100.0 32 ............................ TCACCATTGCCCGGGGCGACGTATGCAAGGGT 303 28 100.0 32 ............................ GCTCTGGCTGGTGCGTGTGTCGGGGTCTTGCC 363 28 100.0 33 ............................ GGTGACGATTAACCCATACTCTTTGCCCGTCTC 424 28 100.0 32 ............................ ATGGCCTCCAGGTAATCGAAAATCTCCCGCTG 484 28 100.0 32 ............................ GGCCGGGCCCAGTAGAAATAGTCCTTGCCGGT 544 28 100.0 32 ............................ GGTTTCCCCGGCCCATTGACGGCGGGCGTATA 604 28 100.0 32 ............................ AACCACAACGGTTACGACTAATCCTGACGGCA 664 28 100.0 32 ............................ GGGCACATTGTAGTGTTTCGTGATGGCGACAA 724 28 100.0 32 ............................ ATATAAAAGCTCTGAAATTATCAGAGCTTTAA 784 28 100.0 32 ............................ TACAGTACGCCCTGACCATGAACGACCCCAAA 844 28 100.0 32 ............................ AACAACATTTACCGGCAGTGAACGGATTTCCA 904 28 96.4 32 .............T.............. GTCACCCGGGGGTCAACCCCAGCAAACCGCTC 964 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 32 GTTCACCGCCACCCAGGCGGCTTAGAAA # Left flank : GGG # Right flank : AACCCCAGAAGGCCCATGTGTTGCTGCGCAACACCGGCCGACTGAAGTGGCCGCTACCGGGCTCGGTGTTGGTTTTTAACTGACAGCTCAAGCTTACGACTTTCGCTTTATTTAGTTACACCGCCGGGTTCGGCATCTGCAGGTGCAGCTCTTCTATGGCCTCCAGCAGTTCCGGGCTTAGTGTGAGGTTCACGCTGTCGATGTTCTCTTTCAGCTGGGTCAGGTTGGTGGCACCAATCAGGTTACTGGTCACGAAGGGGCGGCTGTTTACAAAAGCCTGGGCCAGCTGTGCCGGGCTGATGTTGTGCTCCCGGGCCAGGGCCACGTAGGCGGCGCTTGCCTGTTGGGCGCGGGGGTTGAGGTAGCGCTGAAAACGGTTGTACAGGGTCAGACGGGCGCCGGCGGGGCGGGCGTTGTTTTCATATTTGCCGGTCAGCATGCCGAAGGCCAGCGGAGAATACGCCAGCAGGCCCACTTGCTCGCGCAGGCTGAATTCGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACCCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1739-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPZM01000097.1 Oceanisphaera arctica strain V1-41 contig00097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1738 28 100.0 32 ............................ TGGCTCCCCGAATATTGTTGCCTGCACCGGGC 1678 28 100.0 32 ............................ GCTAGTAGGCCCACTTATCGCCGGGGTGATAG 1618 28 100.0 32 ............................ TAATAAAGCCGCACACATCTACGTCGTCAATC 1558 28 100.0 32 ............................ AGTGAGGTCTTACCCAAGCCTGGCTCCCCGAA 1498 28 100.0 32 ............................ CATCGCCGCCAGTACGGGTAAAGGGTCATGGT 1438 28 100.0 32 ............................ TACTTGATAACCGCGCTGATAATCGGCGCAGT 1378 28 100.0 32 ............................ ATCATGTGCGGCGCGGTTTGCGGCTTCTCAGC 1318 28 100.0 32 ............................ TTTAAATAGTTTTCTGGCAGGCGGCGCATAGA 1258 28 100.0 32 ............................ GTTACCGTCTACCCGCTCGAAGCGGGATCCGA 1198 28 100.0 32 ............................ TACTTGCAGACCATCAGCTTCGAGGCCGTAGT 1138 28 100.0 32 ............................ AGCTATGCCCACTGCAACCACGGTTACAGCTA 1078 28 100.0 32 ............................ CTGTGATGGCTGGTGCATTCCATGGCTAATCC 1018 28 100.0 32 ............................ TCATCAAATTTCTTGATAAAGTTCCAAAATGA 958 28 100.0 32 ............................ GACAAACAATCCAAAGAGGATCTGTTAATTAA 898 28 100.0 32 ............................ ATCCGCTCGGCCCAGCCGGTAGGGCCGCACCA 838 28 100.0 33 ............................ AAGTTGCGCGGTGCCCTGGTCGCCGAGGCTAAC 777 28 100.0 32 ............................ GTTCATGCGGTGCGCTGCAAGATGGGCTATTA 717 28 100.0 32 ............................ ATTCTGACGTTGCCCAATATTAACGGCCACTT 657 28 100.0 32 ............................ TACCGCATCCACAAGCCAGCGCAAGAGCAACC 597 28 100.0 32 ............................ TCGCATATCGCCGTTGGGTGAAAAAGCCTCCA 537 28 100.0 32 ............................ CGCATGGTGGGCACCACCGTATTGCCGTTGGG 477 28 100.0 32 ............................ TTCCAGTTAGATCGTGGTGCCTTGCTCATGCG 417 28 100.0 31 ............................ AACACCCGCTTTACCTGACCGAGGCCGACGA 358 28 100.0 32 ............................ AGTCACAGAACCCCGGCAACTCAAATGGTTCA 298 28 100.0 32 ............................ GCTCATGTGGTGCCGTGCTATGGTAAACCTGA 238 28 100.0 32 ............................ TTTGTTTTATCGTCTTGCTTTGAACGGATTGG 178 28 100.0 32 ............................ TGTCTTGGATGGCACAGCGTTAGCGTCATGAT 118 28 100.0 32 ............................ CTCACCAGTATCCGTTCCCAGCTGTCCGGTGC 58 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 32 GTTCACCGCCACCCAGGCGGCTTAGAAA # Left flank : CCGAAAGTTGGTTT # Right flank : AAACGGCTTCAAACTGAAAGAACAGCCAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACCCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //