Array 1 11714-10688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGXX010000010.1 Campylobacter coli isolate 17-Ref0007-17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11713 36 94.4 30 .GG................................. TCCTTGTTTTTTAATTTATTTTTGTTATAT 11647 36 100.0 30 .................................... ATAGTTTATATAACTCCATCAAGTCTTATT 11581 36 100.0 30 .................................... AAAATAAGCCCATTTATCTATTAAAAAGCT 11515 36 100.0 30 .................................... TTTGTCAAGTTTCAAGCGAAGAAGCAAAGA 11449 36 100.0 30 .................................... TAGCTCTTATTGTAGGCTTAAGAATATTAT 11383 36 100.0 30 .................................... TTTATTATCACCTTCAAACCAGTTCATAGG 11317 36 100.0 30 .................................... AATAATGATATTGAAGTTATTAATTTAATT 11251 36 100.0 30 .................................... CCTAACTTCTCAACTAATGAGAGTTTAGGT 11185 36 100.0 30 .................................... TCCATTTATATAAAAATCACATCCCCTATA 11119 36 100.0 30 .................................... ATAAATTTATACAAATAAAAGAAAGTTACA 11053 36 100.0 30 .................................... AAATTTGCTTTATTTAAATTGTTTTCGCTA 10987 36 100.0 30 .................................... AAAGAAACATCAAAAATTCTAGGGGTTCAA 10921 36 100.0 30 .................................... TATTTTTTAAATCTATCATATATTGAGTGA 10855 36 100.0 30 .................................... TCCAATTAGTAAATATAGCATTAGTGAAGA 10789 36 100.0 30 .................................... GTGATGTTTGTAAGATTTTAGAAATACAAG 10723 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTAGTACCAAAAGAATGTGAAATGTTAGAAAATGAAAGCTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTATTTCTAAATTTACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //