Array 1 1457182-1455756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036265.1 Alienimonas californiensis strain CA12 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1457181 37 100.0 44 ..................................... CGGGCGTAGTGCTGCGGGTGGGTGCTGGCCGTGATGAGCCGCAG 1457100 37 100.0 39 ..................................... GTTAGCTGCCTCACGCCACACCAGCACCTGGGCACTGGT 1457024 37 100.0 42 ..................................... GGCGAGACGACCCTCGTTGAGGTCCGCGAACAGCTCCAGCAA 1456945 37 100.0 37 ..................................... ATCCTTGGGGGCCGCCGCCAGCTCCGGCGTCCGGTAC 1456871 37 100.0 38 ..................................... CTCGACGACCATGTCGAGGAGCGTGGCCTTGACCCAGC 1456796 37 100.0 41 ..................................... TTCGTCTTCAGGACGGCAACGAGCGCGTCGAGGACGCCGGG 1456718 37 100.0 40 ..................................... CAGGCGTATCGCCGCGCACACGGTAGGCCTCGGAGCCCGC 1456641 37 100.0 40 ..................................... CCTTGTGTCTGTTGTGGTAGTGCGCCGCCTCCAGGGCGTC 1456564 37 100.0 40 ..................................... GGGTTGCGGATGTCGAACGAGGGGCGCTCAGCCAGCGGAG 1456487 37 100.0 40 ..................................... GCGACCAGGAGGGCCGCGACAGCCTGCCGACGGTTGTCGC 1456410 37 100.0 36 ..................................... ATCAGAATCCAGTGCCCAAGCATGTACAACGTACTC 1456337 37 100.0 42 ..................................... TCGACGTACTTCTGCCCCAGCAGCACCCACCCCTTTTCGGCC 1456258 37 100.0 40 ..................................... GACGGAGAACAGACCGCTCGCCGGGGGGCGCTCAAGGAGT 1456181 37 91.9 41 .....A..................A...T........ GCGGGGATCTTCTCCAGATCGCACCGCATCAGCTTGGGGGC 1456103 37 97.3 41 .......T............................. TCCTGCCAATCCTCAATCTCTTGAAGGGCGTTGGAGAATTC 1456025 37 100.0 39 ..................................... GAGACGATAATGTCGAGGTCTTTGGCCGGCTCCTCGGCC 1455949 37 97.3 40 .....A............................... GTCGGTCCGCCCTCCTGCATCCGGCGGAGACAGTCGGTCC 1455872 37 78.4 43 C..C..T.T...T......C.T.............T. GGTGTTTGTGTCAGCGGGACGTATGGGCTGTAGAAGTCCATGC 1455792 37 70.3 0 .TTC..T.....T.......CG........C.C.GC. | ========== ====== ====== ====== ===================================== ============================================ ================== 19 37 96.6 40 GCCTCGCCGGGCCTCCGCTAACCAGGCGGGTTGAAAC # Left flank : TGTGGTTTCTGCTGGCCTACGACGTGAGCGATCCGAACCGACTGCGGAAATGCGCCGCGATCCTGGAAACCGCCGCCGTGCGGGTGCAGAAAAGCGTGTTCCTGGCGGAGCTGTCCCCCCTCGACCTGGACGCGCTGCTGGACGCCGCCGCCGTCCACCTGGACCCCTCCGCAGACCTCTTGCAGGCGTGGCGCCTGGCGCCGGGCGAGACGCCGACCGGCCGTGCGCGGGGGCGCCCGGCGGCGATTCGCCCCGAGGCGGTGGTGGCCTCCGCGACCGGCGCGCTGCTCGTCCCAGCGTCGTCGGCGCCCGATCCCCGGGCCGGGGGAGATCCGCAGGGGGGGGTCGGGCGCCGACGAAAACAGTTGACCCGGCAGCCGGTTAGGGCGACACTGCGTCGCCCGGCGAGGCCGACGTTTCGCCCGGCGGACCCCCCAAACCGGGGGGTCGGGCAAACGGCTTGGCAACGTCTTGAAGGTCAAGAGGTTACAACTGCCGGC # Right flank : CACGTTTCGCATTCCGCTTTTGAACCGATCGGCACACGCCGACGTTGCGGGGCGGGTTCTCCCGCGCTCGATGGCTTCTCGTGCCCGCCCTTCGCCCCGCCGCTGATCCTCGCCCCGTGCGGCCCCGGCCCAAGCGGGCGGCGCCGTTCGGGCCGCGGACGTGGCACTGCGTCGGTCCCGGACGACTGGGCACCCGGGGACCGCGGGCCGTCTTCTCGCCCCTGCACGGCGAGCCGGTCGCGGTGCGGACCGGGCGGCTGGATCTGGTCTGCTGTTACGGGACGGTGCACCTGTCGGCGGCGGCGCTATATCGGTTCTGCCAAGCCGGAACGCCGATCGCCCTATTCAGCGCCGACGGCCGCCGCGTTCGCGGACGCCTCCTGCCCGAACGCCCCGGCCCCTCGGCGGCGGGTCTGCGCGACCGACAGTTCGCCGCCCTCGCCGACCCGGATCGCAGACGAGAACTGGCCCGCCGGTTCGTCCTCGACAAACTCGCCGCG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGCCGGGCCTCCGCTAACCAGGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3143173-3140579 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036265.1 Alienimonas californiensis strain CA12 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 3143172 33 100.0 39 ................................. CTGCGGTTCGTCCTCACCGTGGGGGCCGCCGGGGCTGCG 3143100 33 100.0 36 ................................. GGTCCGGCGATACAGGTTTAACGGGAGCTGCGCCAG 3143031 33 100.0 33 ................................. ACCTTCCCGTCGATCCTCCCGGCCCGGGGGAAC 3142965 33 100.0 36 ................................. CCCGGCGTCAGCAGGAACTTCCACCCGTCCGCCTCG 3142896 33 100.0 34 ................................. CACGAACCCCCGGGAAACCCCAATGCCCGTCACG 3142829 33 100.0 34 ................................. CCCGTCACGCCGGTGGTGGAACTGACGGTCGCCC 3142762 33 100.0 33 ................................. TCTGAACCGGCCCGCGTACGCCTGGGCCGTCTT 3142696 33 100.0 33 ................................. ACCACGTCCGACAGGTACAGCAGCACCAGCCGC 3142630 33 100.0 35 ................................. ATCGAGGGGACCGGCTGGATGTATTACGCCCCGAC 3142562 33 97.0 34 ............................A.... GTCATCACGCTCTCGCTGCTGCTGGCGTTCGGCT 3142495 33 100.0 33 ................................. AAGCCCGGCCGGCGGCGGGTATCGTCGCTCCGC 3142429 33 100.0 34 ................................. GCGTTGGCAACGTCGTGCCCCAGCGGCTTCCGCC 3142362 33 100.0 34 ................................. ACGCCCAGTTCGGGGAACAGGTCGATCGGGACGA 3142295 33 100.0 33 ................................. CAACACGACCCGCAAAGGGAAGACCAATATGAC 3142229 33 100.0 34 ................................. CTCGCCGACCAGCCCGCCTGACTCCCCCTCTAAC 3142162 33 100.0 34 ................................. TTCTTGCCTTCCGGCAGGGCGCCGAGGGCGCCCA 3142095 33 100.0 34 ................................. GAGGAGTACCGGGACGAAGCCCGCCGCAGCGACA 3142028 33 100.0 34 ................................. ATCAACTGTGCGGTGGGCAGCGCCGGGCTGATTT 3141961 33 100.0 36 ................................. TTGAGCTGCACGGCATGGGGCCGGACGGCGGAGATC 3141892 33 100.0 37 ................................. GTCGTAGCCGATCGCGTAGGTCACGCCGGCCTGCGGG 3141822 33 100.0 36 ................................. CGGTATGGTGGCCGCTGCCGCCGTAGAAGAAGCGGC 3141753 33 100.0 34 ................................. GTCATCCGTGCCCCCCCTCGCCCGGCAGCGAGTC 3141686 33 100.0 36 ................................. GCCTTCCCCCACACCATCCCCACCCGAGCCCGGACC 3141617 33 100.0 34 ................................. GCCCTGTCCGACGTACGCCAAGGCGTGACCGGCG 3141550 33 100.0 34 ................................. ATTGGCAGCGCGACGCAAGGCCCGTTCGTCTGGC 3141483 33 100.0 32 ................................. TGGACCCGCTCGGACGGCGTGACCGTCGCGGC 3141418 33 100.0 34 ................................. CTACGGCGTTGCCCCGATCGCTCGTTGCGGTCGG 3141351 33 100.0 34 ................................. GTCCCGCACGGTCAGCCGCTTCCCCGGGCCGGGG 3141284 33 100.0 34 ................................. GGCCGGGAGTATGTGGACGACCCGCGGCAGTTGT 3141217 33 100.0 35 ................................. ACGTTGCTCCTGTGGCCGTCTCCCGCCGCTTGGCC 3141149 33 100.0 33 ................................. ATCCCCAGCGACGACTACGACTGGTTCGCCCAA 3141083 33 100.0 35 ................................. CTGCCACGGCTCGGGCACGAATCGCCGCCCCGCCC 3141015 33 100.0 34 ................................. GTCACGAAGGAGCACGGCATCGAGGAGCGGGTCG 3140948 33 100.0 34 ................................. CCGCTGTCGGAACGGATGCGGCGGGAACTGGAAG 3140881 33 100.0 35 ................................. ACCGCCCTCCGGAGCCTGATCCTCGCGATCGAAGC 3140813 33 100.0 35 ................................. GCCGCGGCGGGGGCCGGGGCAGCGACCGCCAGGGC 3140745 33 100.0 35 ................................. GTGCGGCGGGCCGGCGACGTCCGCCGATCGGGGCG 3140677 33 100.0 34 ................................. TACCAGCGGGCGAAGGCCCGGCCCCTGTTTGACC 3140610 32 90.9 0 .........C..G.-.................. | ========== ====== ====== ====== ================================= ======================================= ================== 39 33 99.7 34 GTCGCCCCCTTCACCGGGGGCGTGGATTGAAAC # Left flank : TGCTGGTGACCTACGACGTTTCGACCGTCACGGATGGGGGAAAGAAGCGGCTGCGGCAGGTGTCGAAGGCCTGCGAGAACCGCGGCCAGCGGGTGCAGAACAGCGTGTTCGAGATGAAGGTCGACCCGGCGATCTGGGCGACGCTGCGGGCGGAGTTGTTGGCGCTGATCGACCCGGCGACCGACAGCCTGCGGTTCTATCGGCTGGGGAGGAACTGGCAGAGCAAGGTGGAGCACCACGGGGCGAAGCCGGGGTACGACGTGGACGGTCCGCTGATCGTGTGAGACGCTGCGACGGCGCCGCCGGCCGCGGGCCGGCACTCCGCGAACCCGAAGCGTCCGCCCTGTCCCTGGGAGGTTCGCGATCGGCGCAAGTGCGTTCTCTGACAAGACGATGGATGAACAGTCGCTCCGACGTTCGCCCGCCGACCCTGACGATCGGCGGGGTTCGCGGCCCCGGCCGCTGGAACTGCTGTGTCGTCAAGAGCTAGGTTGCCGAGG # Right flank : GTCTTCAGCGCCATCACCCGCGACGACCTGTTCGTCGCCCCCCTTGCCGCGCCGAACTGCACGGTCGCCTTGACGTCGACCTCGCTCTCGGGGATCTGCTGGACGGTCGTGATGCCGGCCAGCGGCAGGAAGAACGTGAACTCGTGGTGCAGCGTGTCGAAGTCGCAGGCCAGCACCGCCCCGTCGCCGAGCCGCTGGGCCTCGACGGTCACGCCGTCGGTGGCGAGTGCGTACTTCGCCTTCTGCTTCTTCGCCGCGGGGCTGGCGGCGAGGGCGGCGAGCGTCTCCGTCGCCTCCCCCTCGCCGCAGGTCTTCAGGTGCACGTTGTTGCGGTACAGGACGGCCCCCGGCACGTCCGTCTTGTTGCTGGCTCCCTTCCGCAGCCGCTTGATCGCGGTCGGCTTGTTCCCGAACGCGGCGAGAAAGTCGTAGGGGAACTCCTCCGGCTCGAACGGCTTGGCGACCAACGCCTCGACGGCCTCCTCGATCTCGACGGCGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCACCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.50,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //