Array 1 120920-120291 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFP01000095.1 Pseudomonas aeruginosa isolate 60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 120919 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 120859 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 120799 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 120739 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 120678 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 120618 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 120558 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 120498 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 120438 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 120378 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 120318 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53350-54994 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFP01000035.1 Pseudomonas aeruginosa isolate 60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53350 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 53410 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 53470 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 53530 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 53590 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 53650 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 53710 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 53770 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 53830 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 53890 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 53950 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 54010 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 54071 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 54131 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 54191 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 54251 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 54311 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 54371 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 54431 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 54491 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 54547 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 54607 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 54667 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 54727 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 54787 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 54847 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 54907 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 54967 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 65338-63869 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFP01000035.1 Pseudomonas aeruginosa isolate 60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65337 28 100.0 32 ............................ TCGCGAGCTTCACGAACGAAGACCAGCGAGTT 65277 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 65217 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 65157 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 65097 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 65037 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 64977 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 64917 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 64857 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 64797 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 64737 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 64677 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 64617 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 64557 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 64497 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 64437 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 64377 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 64317 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 64257 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 64197 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 64137 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 64077 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 64017 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 63957 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 63896 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //